Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6123 and GFF6124 are separated by 4 nucleotides GFF6124 and GFF6125 overlap by 4 nucleotides GFF6125 and GFF6126 are separated by 55 nucleotides
GFF6123 - ABC-type antimicrobial peptide transport system, ATPase component, at 24,857 to 25,603
GFF6123
GFF6124 - Predicted zinc-binding protein, at 25,608 to 26,186
GFF6124
GFF6125 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 26,183 to 27,091
GFF6125
GFF6126 - putative membrane protein, at 27,147 to 28,079
GFF6126
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 25.308 kb on + strand, within GFF6123 at 25.309 kb on - strand, within GFF6123 at 25.309 kb on - strand, within GFF6123 at 26.250 kb on + strand at 26.250 kb on + strand at 26.739 kb on + strand, within GFF6125 at 26.739 kb on + strand, within GFF6125 at 26.739 kb on + strand, within GFF6125 at 26.740 kb on - strand, within GFF6125 at 26.740 kb on - strand, within GFF6125 at 26.740 kb on - strand, within GFF6125 at 26.740 kb on - strand, within GFF6125 at 26.740 kb on - strand, within GFF6125 at 26.760 kb on + strand, within GFF6125 at 26.943 kb on + strand, within GFF6125 at 26.973 kb on + strand, within GFF6125 at 26.973 kb on + strand, within GFF6125 at 26.973 kb on + strand, within GFF6125 at 26.974 kb on - strand, within GFF6125 at 26.974 kb on - strand, within GFF6125 at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.087 kb on + strand at 27.088 kb on - strand at 27.088 kb on - strand at 27.088 kb on - strand at 27.088 kb on - strand at 27.088 kb on - strand at 27.088 kb on - strand at 27.088 kb on - strand at 27.221 kb on + strand at 27.221 kb on + strand at 27.222 kb on - strand at 27.508 kb on + strand, within GFF6126 at 27.565 kb on + strand, within GFF6126 at 27.565 kb on + strand, within GFF6126 at 27.565 kb on + strand, within GFF6126 at 27.565 kb on + strand, within GFF6126 at 27.565 kb on + strand, within GFF6126 at 27.565 kb on + strand, within GFF6126 at 27.565 kb on + strand, within GFF6126 at 27.566 kb on - strand, within GFF6126 at 27.566 kb on - strand, within GFF6126 at 27.566 kb on - strand, within GFF6126 at 27.566 kb on - strand, within GFF6126 at 27.566 kb on - strand, within GFF6126 at 27.566 kb on - strand, within GFF6126 at 27.566 kb on - strand, within GFF6126 at 27.566 kb on - strand, within GFF6126 at 27.799 kb on + strand, within GFF6126 at 27.799 kb on + strand, within GFF6126 at 27.799 kb on + strand, within GFF6126 at 27.799 kb on + strand, within GFF6126 at 27.799 kb on + strand, within GFF6126 at 27.800 kb on - strand, within GFF6126 at 27.800 kb on - strand, within GFF6126 at 27.800 kb on - strand, within GFF6126 at 27.800 kb on - strand, within GFF6126 at 27.800 kb on - strand, within GFF6126 at 27.800 kb on - strand, within GFF6126 at 27.844 kb on + strand, within GFF6126 at 27.844 kb on + strand, within GFF6126 at 27.845 kb on - strand, within GFF6126 at 27.845 kb on - strand, within GFF6126
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 25,308 + GFF6123 0.60 -0.0 25,309 - GFF6123 0.61 -1.6 25,309 - GFF6123 0.61 -0.5 26,250 + -0.3 26,250 + -0.4 26,739 + GFF6125 0.61 +0.2 26,739 + GFF6125 0.61 -1.2 26,739 + GFF6125 0.61 -0.5 26,740 - GFF6125 0.61 -0.2 26,740 - GFF6125 0.61 -0.4 26,740 - GFF6125 0.61 -0.3 26,740 - GFF6125 0.61 -0.5 26,740 - GFF6125 0.61 -0.4 26,760 + GFF6125 0.63 +0.1 26,943 + GFF6125 0.84 -0.3 26,973 + GFF6125 0.87 -2.8 26,973 + GFF6125 0.87 +0.1 26,973 + GFF6125 0.87 -1.5 26,974 - GFF6125 0.87 -0.1 26,974 - GFF6125 0.87 -0.3 27,087 + -0.5 27,087 + -0.9 27,087 + -0.2 27,087 + +0.1 27,087 + +0.7 27,087 + -0.2 27,087 + -0.4 27,087 + -0.7 27,087 + +0.2 27,087 + -0.5 27,087 + +0.2 27,087 + +1.2 27,088 - +0.5 27,088 - -0.3 27,088 - +0.9 27,088 - -1.0 27,088 - +0.2 27,088 - -0.9 27,088 - -0.6 27,221 + -0.3 27,221 + +0.2 27,222 - -0.9 27,508 + GFF6126 0.39 -0.6 27,565 + GFF6126 0.45 -0.8 27,565 + GFF6126 0.45 +0.5 27,565 + GFF6126 0.45 -0.4 27,565 + GFF6126 0.45 -0.1 27,565 + GFF6126 0.45 +0.0 27,565 + GFF6126 0.45 +0.2 27,565 + GFF6126 0.45 -0.0 27,566 - GFF6126 0.45 -2.5 27,566 - GFF6126 0.45 -0.1 27,566 - GFF6126 0.45 -0.3 27,566 - GFF6126 0.45 +0.6 27,566 - GFF6126 0.45 -0.2 27,566 - GFF6126 0.45 -0.9 27,566 - GFF6126 0.45 -0.2 27,566 - GFF6126 0.45 +1.3 27,799 + GFF6126 0.70 -0.2 27,799 + GFF6126 0.70 -1.6 27,799 + GFF6126 0.70 -0.9 27,799 + GFF6126 0.70 -0.1 27,799 + GFF6126 0.70 -0.1 27,800 - GFF6126 0.70 -0.0 27,800 - GFF6126 0.70 +1.5 27,800 - GFF6126 0.70 +0.4 27,800 - GFF6126 0.70 +0.5 27,800 - GFF6126 0.70 -0.6 27,800 - GFF6126 0.70 -0.7 27,844 + GFF6126 0.75 -0.7 27,844 + GFF6126 0.75 -2.2 27,845 - GFF6126 0.75 -0.4 27,845 - GFF6126 0.75 +0.1
Or see this region's nucleotide sequence