Strain Fitness in Variovorax sp. SCN45 around GFF5636

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
11,381	+				+1.1
11,381	+				-0.7
11,381	+				-0.2
11,381	+				-0.7
11,381	+				-0.0
11,381	+				-0.8
11,382	-				-0.5
11,382	-				-0.4
11,382	-				+0.0
11,382	-				-0.7
11,382	-				+0.3
11,382	-				-0.5
11,382	-				-0.2
11,382	-				+0.0
11,383	+				+0.4
11,393	+				-0.4
11,393	+				+0.6
11,393	+				+0.0
11,393	+				-3.1
11,393	+				-1.0
11,393	+				-0.7
11,393	+				+0.6
11,393	+				-0.6
11,393	+				-0.1
11,393	+				-0.7
11,394	-				-0.5
11,394	-				-1.1
11,395	+				-0.1
11,395	+				+0.0
11,395	+				-0.7
11,395	+				+0.6
11,395	+				+1.2
11,395	+				-0.7
11,395	+				+0.4
11,395	+				-0.9
11,396	-				+0.7
11,396	-				+0.2
11,396	-				-0.1
11,396	-				-0.5
11,396	-				-0.6
11,434	+				+0.2
11,434	+				+0.4
11,435	-				-0.1
11,448	+				-0.4
11,448	+				-0.0
11,449	-				+0.6
11,449	-				+0.4
11,449	-				+1.2
11,449	-				+0.1
11,449	-				-0.5
11,464	-				+1.6
11,464	-				+2.6
11,675	-		GFF5635	0.30	-1.0
11,740	+		GFF5635	0.39	-0.2
11,740	+		GFF5635	0.39	+0.8
11,740	+		GFF5635	0.39	+0.7
11,740	+		GFF5635	0.39	-1.7
11,741	-		GFF5635	0.40	-0.3
11,741	-		GFF5635	0.40	+0.0
11,741	-		GFF5635	0.40	-0.7
11,741	-		GFF5635	0.40	+0.6
12,040	+		GFF5635	0.83	-0.5
12,040	+		GFF5635	0.83	-0.2
12,040	+		GFF5635	0.83	+0.0
12,040	+		GFF5635	0.83	-3.2
12,040	+		GFF5635	0.83	-1.1
12,040	+		GFF5635	0.83	-1.4
12,040	+		GFF5635	0.83	-0.7
12,040	+		GFF5635	0.83	-0.2
12,040	+		GFF5635	0.83	-0.4
12,041	-		GFF5635	0.83	-1.0
12,041	-		GFF5635	0.83	-0.0
12,041	-		GFF5635	0.83	-0.0
12,041	-		GFF5635	0.83	-0.4
12,041	-		GFF5635	0.83	-0.2
12,041	-		GFF5635	0.83	+1.1
12,041	-		GFF5635	0.83	-2.2
12,041	-		GFF5635	0.83	+0.1
12,041	-		GFF5635	0.83	-0.6
12,182	+				-0.7
12,184	+				+1.9
12,184	+				-0.8
12,184	+				+0.2
12,184	+				-0.3
12,184	+				-1.3
12,185	-				+0.0
12,185	-				-0.4
12,185	-				-0.5
12,185	-				+0.4
12,185	-				+0.4
12,186	+				-0.6
12,186	+				-0.6
12,186	+				+0.6
12,186	+				-0.1
12,186	+				-0.1
12,187	-				-0.1
12,187	-				+0.5
12,187	-				-0.4
12,187	-				+0.0
12,187	-				-1.4
12,627	+		GFF5636	0.57	-0.7
12,628	-		GFF5636	0.57	-0.4
12,717	+		GFF5636	0.69	+0.6
12,717	+		GFF5636	0.69	-0.2
12,717	+		GFF5636	0.69	-0.8
12,717	+		GFF5636	0.69	-0.8
12,718	-		GFF5636	0.69	+0.4
12,718	-		GFF5636	0.69	-2.1
12,828	+		GFF5636	0.84	-0.2
12,828	+		GFF5636	0.84	-2.4
12,829	-		GFF5636	0.84	-0.8
12,829	-		GFF5636	0.84	+0.2
13,040	+		GFF5637	0.12	+0.2
13,040	+		GFF5637	0.12	-0.4
13,040	+		GFF5637	0.12	+0.4
13,139	+		GFF5637	0.25	-0.1
13,139	+		GFF5637	0.25	-1.2
13,139	+		GFF5637	0.25	-1.0
13,140	-		GFF5637	0.25	+0.5
13,140	-		GFF5637	0.25	-0.1
13,140	-		GFF5637	0.25	-1.2
13,140	-		GFF5637	0.25	-0.5
13,191	-		GFF5637	0.31	-0.0
13,191	-		GFF5637	0.31	-1.8
13,205	+		GFF5637	0.33	-0.5
13,205	+		GFF5637	0.33	-0.2
13,205	+		GFF5637	0.33	-0.2
13,205	+		GFF5637	0.33	-1.6
13,205	+		GFF5637	0.33	+0.2
13,205	+		GFF5637	0.33	-0.1
13,206	-		GFF5637	0.33	-0.1
13,206	-		GFF5637	0.33	-0.4
13,206	-		GFF5637	0.33	+0.0
13,206	-		GFF5637	0.33	-0.4
13,225	+		GFF5637	0.36	-1.2
13,225	+		GFF5637	0.36	-0.8
13,225	+		GFF5637	0.36	-0.2
13,225	+		GFF5637	0.36	-0.2
13,226	-		GFF5637	0.36	-0.4
13,226	-		GFF5637	0.36	-0.6
13,226	-		GFF5637	0.36	-0.1
13,580	+		GFF5637	0.81	-1.4
13,580	+		GFF5637	0.81	-0.7
13,580	+		GFF5637	0.81	-0.5
13,581	-		GFF5637	0.81	-0.9
13,581	-		GFF5637	0.81	+0.6
13,581	-		GFF5637	0.81	+1.6
13,581	-		GFF5637	0.81	-0.2
13,581	-		GFF5637	0.81	+0.2
13,741	+				+0.5
13,749	-				-1.5
13,756	-				-1.1