Strain Fitness in Variovorax sp. SCN45 around GFF5322

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5320 and GFF5321 are separated by 6 nucleotidesGFF5321 and GFF5322 overlap by 4 nucleotidesGFF5322 and GFF5323 overlap by 4 nucleotides GFF5320 - Type IV pilus biogenesis protein PilN, at 197,820 to 198,443 GFF5320 GFF5321 - Type IV pilus biogenesis protein PilO, at 198,450 to 199,127 GFF5321 GFF5322 - Type IV pilus biogenesis protein PilP, at 199,124 to 199,663 GFF5322 GFF5323 - Type IV pilus biogenesis protein PilQ, at 199,660 to 201,840 GFF5323 Position (kb) 199 200Strain fitness (log2 ratio) -3 -2 -1 0 1at 198.159 kb on + strand, within GFF5320at 198.159 kb on + strand, within GFF5320at 198.159 kb on + strand, within GFF5320at 198.159 kb on + strand, within GFF5320at 198.159 kb on + strand, within GFF5320at 198.159 kb on + strand, within GFF5320at 198.160 kb on - strand, within GFF5320at 198.160 kb on - strand, within GFF5320at 198.245 kb on + strand, within GFF5320at 198.245 kb on + strand, within GFF5320at 198.469 kb on + strandat 198.633 kb on + strand, within GFF5321at 198.687 kb on + strand, within GFF5321at 198.687 kb on + strand, within GFF5321at 198.688 kb on - strand, within GFF5321at 198.688 kb on - strand, within GFF5321at 198.688 kb on - strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.891 kb on + strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.934 kb on - strand, within GFF5321at 198.934 kb on - strand, within GFF5321at 198.934 kb on - strand, within GFF5321at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.290 kb on - strand, within GFF5322at 199.290 kb on - strand, within GFF5322at 199.290 kb on - strand, within GFF5322at 199.290 kb on - strand, within GFF5322at 199.290 kb on - strand, within GFF5322at 199.508 kb on + strand, within GFF5322at 199.508 kb on + strand, within GFF5322at 199.508 kb on + strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.511 kb on + strand, within GFF5322at 199.529 kb on + strand, within GFF5322at 199.529 kb on + strand, within GFF5322at 199.530 kb on - strand, within GFF5322at 199.530 kb on - strand, within GFF5322at 199.530 kb on - strand, within GFF5322at 199.544 kb on + strand, within GFF5322at 199.544 kb on + strand, within GFF5322at 199.544 kb on + strand, within GFF5322at 199.545 kb on - strand, within GFF5322at 199.629 kb on + strandat 199.629 kb on + strandat 199.629 kb on + strandat 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.039 kb on + strand, within GFF5323at 200.166 kb on + strand, within GFF5323at 200.166 kb on + strand, within GFF5323at 200.166 kb on + strand, within GFF5323at 200.167 kb on - strand, within GFF5323at 200.167 kb on - strand, within GFF5323at 200.167 kb on - strand, within GFF5323at 200.395 kb on + strand, within GFF5323at 200.395 kb on + strand, within GFF5323at 200.396 kb on - strand, within GFF5323at 200.473 kb on + strand, within GFF5323at 200.474 kb on - strand, within GFF5323at 200.513 kb on - strand, within GFF5323

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
remove
198,159 + GFF5320 0.54 -2.4
198,159 + GFF5320 0.54 +0.2
198,159 + GFF5320 0.54 -1.2
198,159 + GFF5320 0.54 -0.5
198,159 + GFF5320 0.54 -1.9
198,159 + GFF5320 0.54 -1.8
198,160 - GFF5320 0.54 -1.0
198,160 - GFF5320 0.54 -1.2
198,245 + GFF5320 0.68 -1.9
198,245 + GFF5320 0.68 -1.6
198,469 + -0.1
198,633 + GFF5321 0.27 +0.0
198,687 + GFF5321 0.35 -1.9
198,687 + GFF5321 0.35 -1.7
198,688 - GFF5321 0.35 -0.7
198,688 - GFF5321 0.35 -1.6
198,688 - GFF5321 0.35 +0.1
198,756 + GFF5321 0.45 -1.0
198,756 + GFF5321 0.45 -0.8
198,756 + GFF5321 0.45 -1.2
198,756 + GFF5321 0.45 -1.3
198,756 + GFF5321 0.45 -1.5
198,756 + GFF5321 0.45 -0.1
198,757 - GFF5321 0.45 -0.7
198,757 - GFF5321 0.45 -1.3
198,757 - GFF5321 0.45 -1.2
198,757 - GFF5321 0.45 -1.5
198,757 - GFF5321 0.45 -0.9
198,757 - GFF5321 0.45 -1.5
198,757 - GFF5321 0.45 -0.5
198,757 - GFF5321 0.45 -1.5
198,757 - GFF5321 0.45 -1.9
198,891 + GFF5321 0.65 -0.9
198,892 - GFF5321 0.65 -3.6
198,892 - GFF5321 0.65 -0.9
198,892 - GFF5321 0.65 -1.2
198,892 - GFF5321 0.65 -1.2
198,892 - GFF5321 0.65 -0.7
198,892 - GFF5321 0.65 -0.7
198,892 - GFF5321 0.65 -1.2
198,892 - GFF5321 0.65 -1.7
198,892 - GFF5321 0.65 -1.2
198,894 + GFF5321 0.65 -0.4
198,894 + GFF5321 0.65 -1.2
198,894 + GFF5321 0.65 -1.2
198,894 + GFF5321 0.65 -0.4
198,894 + GFF5321 0.65 -1.4
198,894 + GFF5321 0.65 -0.8
198,894 + GFF5321 0.65 -0.2
198,894 + GFF5321 0.65 -1.0
198,894 + GFF5321 0.65 -1.8
198,895 - GFF5321 0.66 -1.2
198,895 - GFF5321 0.66 -1.4
198,895 - GFF5321 0.66 -1.2
198,895 - GFF5321 0.66 -2.0
198,895 - GFF5321 0.66 -1.1
198,895 - GFF5321 0.66 -1.0
198,895 - GFF5321 0.66 -0.8
198,895 - GFF5321 0.66 -1.0
198,895 - GFF5321 0.66 -1.7
198,933 + GFF5321 0.71 -1.4
198,933 + GFF5321 0.71 -0.3
198,933 + GFF5321 0.71 -1.7
198,933 + GFF5321 0.71 -0.2
198,933 + GFF5321 0.71 -1.2
198,934 - GFF5321 0.71 -1.5
198,934 - GFF5321 0.71 -1.3
198,934 - GFF5321 0.71 -1.8
199,289 + GFF5322 0.31 -1.8
199,289 + GFF5322 0.31 -1.4
199,289 + GFF5322 0.31 -1.7
199,289 + GFF5322 0.31 -0.4
199,289 + GFF5322 0.31 -1.2
199,289 + GFF5322 0.31 -2.0
199,289 + GFF5322 0.31 -1.4
199,289 + GFF5322 0.31 -1.2
199,289 + GFF5322 0.31 -0.1
199,290 - GFF5322 0.31 -2.0
199,290 - GFF5322 0.31 -1.4
199,290 - GFF5322 0.31 -0.4
199,290 - GFF5322 0.31 -1.4
199,290 - GFF5322 0.31 -1.1
199,508 + GFF5322 0.71 +0.0
199,508 + GFF5322 0.71 -1.8
199,508 + GFF5322 0.71 -2.4
199,509 - GFF5322 0.71 -2.6
199,509 - GFF5322 0.71 -2.7
199,509 - GFF5322 0.71 -0.2
199,509 - GFF5322 0.71 -2.5
199,509 - GFF5322 0.71 -1.2
199,509 - GFF5322 0.71 -0.8
199,509 - GFF5322 0.71 -1.2
199,511 + GFF5322 0.72 -1.2
199,529 + GFF5322 0.75 -1.4
199,529 + GFF5322 0.75 -1.0
199,530 - GFF5322 0.75 +0.2
199,530 - GFF5322 0.75 -0.3
199,530 - GFF5322 0.75 -1.9
199,544 + GFF5322 0.78 -2.6
199,544 + GFF5322 0.78 -1.9
199,544 + GFF5322 0.78 -2.4
199,545 - GFF5322 0.78 -0.9
199,629 + -0.8
199,629 + -1.5
199,629 + -0.5
200,011 + GFF5323 0.16 +0.5
200,011 + GFF5323 0.16 +0.1
200,011 + GFF5323 0.16 -0.7
200,011 + GFF5323 0.16 -0.8
200,011 + GFF5323 0.16 -1.4
200,011 + GFF5323 0.16 -1.5
200,011 + GFF5323 0.16 -1.8
200,011 + GFF5323 0.16 -1.7
200,012 - GFF5323 0.16 -1.1
200,012 - GFF5323 0.16 -1.3
200,012 - GFF5323 0.16 -0.4
200,012 - GFF5323 0.16 -1.3
200,012 - GFF5323 0.16 -1.6
200,012 - GFF5323 0.16 +0.0
200,012 - GFF5323 0.16 -1.0
200,012 - GFF5323 0.16 -0.7
200,012 - GFF5323 0.16 -2.4
200,012 - GFF5323 0.16 -1.0
200,039 + GFF5323 0.17 -1.4
200,166 + GFF5323 0.23 -0.2
200,166 + GFF5323 0.23 -0.4
200,166 + GFF5323 0.23 -1.6
200,167 - GFF5323 0.23 -1.7
200,167 - GFF5323 0.23 -0.5
200,167 - GFF5323 0.23 -1.6
200,395 + GFF5323 0.34 -0.1
200,395 + GFF5323 0.34 -1.2
200,396 - GFF5323 0.34 -1.4
200,473 + GFF5323 0.37 -0.7
200,474 - GFF5323 0.37 -1.2
200,513 - GFF5323 0.39 -1.4

Or see this region's nucleotide sequence