Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5038 and GFF5039 overlap by 4 nucleotides GFF5039 and GFF5040 are separated by 331 nucleotides GFF5040 and GFF5041 are separated by 78 nucleotides
GFF5038 - Tetracycline resistance, MFS efflux pump => Tet(C), at 138,541 to 139,773
GFF5038
GFF5039 - no description, at 139,770 to 140,144
GFF5039
GFF5040 - 3-hydroxypropionate dehydrogenase DddA, flavin-containing (EC 1.1.1.59), at 140,476 to 142,107
GFF5040
GFF5041 - Malonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.18), at 142,186 to 143,697
GFF5041
Position (kb) 140
141
142
143 Strain fitness (log2 ratio) -2
-1
0
1
2 at 139.583 kb on + strand, within GFF5038 at 139.583 kb on + strand, within GFF5038 at 139.583 kb on + strand, within GFF5038 at 139.584 kb on - strand, within GFF5038 at 139.754 kb on + strand at 139.754 kb on + strand at 139.754 kb on + strand at 139.754 kb on + strand at 139.754 kb on + strand at 139.755 kb on - strand at 139.755 kb on - strand at 139.755 kb on - strand at 139.755 kb on - strand at 139.755 kb on - strand at 139.755 kb on - strand at 139.755 kb on - strand at 139.813 kb on + strand, within GFF5039 at 139.813 kb on + strand, within GFF5039 at 139.813 kb on + strand, within GFF5039 at 139.813 kb on + strand, within GFF5039 at 139.813 kb on + strand, within GFF5039 at 139.968 kb on + strand, within GFF5039 at 139.968 kb on + strand, within GFF5039 at 140.263 kb on - strand at 140.263 kb on - strand at 140.379 kb on + strand at 140.380 kb on - strand at 140.477 kb on + strand at 140.477 kb on + strand at 140.477 kb on + strand at 140.477 kb on + strand at 140.478 kb on - strand at 140.478 kb on - strand at 140.532 kb on + strand at 140.532 kb on + strand at 140.532 kb on + strand at 140.533 kb on - strand at 140.735 kb on + strand, within GFF5040 at 140.735 kb on + strand, within GFF5040 at 140.736 kb on - strand, within GFF5040 at 140.768 kb on + strand, within GFF5040 at 140.769 kb on - strand, within GFF5040 at 140.855 kb on + strand, within GFF5040 at 140.855 kb on + strand, within GFF5040 at 140.855 kb on + strand, within GFF5040 at 140.855 kb on + strand, within GFF5040 at 140.855 kb on + strand, within GFF5040 at 140.855 kb on + strand, within GFF5040 at 140.855 kb on + strand, within GFF5040 at 140.855 kb on + strand, within GFF5040 at 140.856 kb on - strand, within GFF5040 at 140.856 kb on - strand, within GFF5040 at 140.856 kb on - strand, within GFF5040 at 141.011 kb on + strand, within GFF5040 at 141.011 kb on + strand, within GFF5040 at 141.011 kb on + strand, within GFF5040 at 141.011 kb on + strand, within GFF5040 at 141.011 kb on + strand, within GFF5040 at 141.012 kb on - strand, within GFF5040 at 141.012 kb on - strand, within GFF5040 at 141.012 kb on - strand, within GFF5040 at 141.012 kb on - strand, within GFF5040 at 141.012 kb on - strand, within GFF5040 at 141.012 kb on - strand, within GFF5040 at 141.012 kb on - strand, within GFF5040 at 141.107 kb on + strand, within GFF5040 at 141.107 kb on + strand, within GFF5040 at 141.107 kb on + strand, within GFF5040 at 141.107 kb on + strand, within GFF5040 at 141.108 kb on - strand, within GFF5040 at 141.108 kb on - strand, within GFF5040 at 141.108 kb on - strand, within GFF5040 at 141.108 kb on - strand, within GFF5040 at 141.108 kb on - strand, within GFF5040 at 141.108 kb on - strand, within GFF5040 at 141.108 kb on - strand, within GFF5040 at 141.182 kb on + strand, within GFF5040 at 141.182 kb on + strand, within GFF5040 at 141.182 kb on + strand, within GFF5040 at 141.482 kb on + strand, within GFF5040 at 141.482 kb on + strand, within GFF5040 at 141.483 kb on - strand, within GFF5040 at 141.483 kb on - strand, within GFF5040 at 141.483 kb on - strand, within GFF5040 at 141.483 kb on - strand, within GFF5040 at 141.551 kb on + strand, within GFF5040 at 141.551 kb on + strand, within GFF5040 at 141.552 kb on - strand, within GFF5040 at 141.711 kb on - strand, within GFF5040 at 141.711 kb on - strand, within GFF5040 at 141.795 kb on - strand, within GFF5040 at 141.818 kb on + strand, within GFF5040 at 141.818 kb on + strand, within GFF5040 at 141.818 kb on + strand, within GFF5040 at 141.818 kb on + strand, within GFF5040 at 141.818 kb on + strand, within GFF5040 at 141.818 kb on + strand, within GFF5040 at 141.818 kb on + strand, within GFF5040 at 141.818 kb on + strand, within GFF5040 at 141.819 kb on - strand, within GFF5040 at 141.819 kb on - strand, within GFF5040 at 141.819 kb on - strand, within GFF5040 at 141.819 kb on - strand, within GFF5040 at 141.819 kb on - strand, within GFF5040 at 141.819 kb on - strand, within GFF5040 at 141.819 kb on - strand, within GFF5040 at 141.869 kb on + strand, within GFF5040 at 141.914 kb on + strand, within GFF5040 at 141.914 kb on + strand, within GFF5040 at 141.915 kb on - strand, within GFF5040 at 141.915 kb on - strand, within GFF5040 at 141.915 kb on - strand, within GFF5040 at 141.915 kb on - strand, within GFF5040 at 141.915 kb on - strand, within GFF5040 at 141.915 kb on - strand, within GFF5040 at 141.915 kb on - strand, within GFF5040 at 141.947 kb on + strand at 141.947 kb on + strand at 141.947 kb on + strand at 141.947 kb on + strand at 141.947 kb on + strand at 141.947 kb on + strand at 141.947 kb on + strand at 141.948 kb on - strand at 141.948 kb on - strand at 141.948 kb on - strand at 141.953 kb on + strand at 141.953 kb on + strand at 141.954 kb on - strand at 141.954 kb on - strand at 141.980 kb on + strand at 141.980 kb on + strand at 141.980 kb on + strand at 141.980 kb on + strand at 141.981 kb on - strand at 141.981 kb on - strand at 142.086 kb on - strand at 142.086 kb on - strand at 142.086 kb on - strand at 142.086 kb on - strand at 142.086 kb on - strand at 142.086 kb on - strand at 142.187 kb on + strand at 142.187 kb on + strand at 142.187 kb on + strand at 142.187 kb on + strand at 142.187 kb on + strand at 142.187 kb on + strand at 142.187 kb on + strand at 142.188 kb on - strand at 142.188 kb on - strand at 142.188 kb on - strand at 142.268 kb on + strand at 142.268 kb on + strand at 142.268 kb on + strand at 142.268 kb on + strand at 142.269 kb on - strand at 142.269 kb on - strand at 142.269 kb on - strand at 142.269 kb on - strand at 142.269 kb on - strand at 142.269 kb on - strand at 142.292 kb on + strand at 142.544 kb on + strand, within GFF5041 at 142.544 kb on + strand, within GFF5041 at 142.544 kb on + strand, within GFF5041 at 142.544 kb on + strand, within GFF5041 at 142.544 kb on + strand, within GFF5041 at 142.544 kb on + strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.689 kb on - strand, within GFF5041 at 142.689 kb on - strand, within GFF5041 at 142.689 kb on - strand, within GFF5041 at 142.689 kb on - strand, within GFF5041 at 142.689 kb on - strand, within GFF5041 at 142.689 kb on - strand, within GFF5041 at 142.992 kb on - strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 139,583 + GFF5038 0.85 -0.7 139,583 + GFF5038 0.85 +0.1 139,583 + GFF5038 0.85 +1.2 139,584 - GFF5038 0.85 -1.4 139,754 + -0.9 139,754 + +0.7 139,754 + -0.6 139,754 + +2.3 139,754 + +0.4 139,755 - -1.1 139,755 - -0.2 139,755 - +0.2 139,755 - -0.9 139,755 - +0.3 139,755 - -0.5 139,755 - +0.4 139,813 + GFF5039 0.11 -0.5 139,813 + GFF5039 0.11 +0.3 139,813 + GFF5039 0.11 -2.0 139,813 + GFF5039 0.11 +0.6 139,813 + GFF5039 0.11 +0.5 139,968 + GFF5039 0.53 +0.7 139,968 + GFF5039 0.53 +0.0 140,263 - +0.2 140,263 - -0.6 140,379 + -0.4 140,380 - +0.5 140,477 + +0.2 140,477 + -0.4 140,477 + +0.2 140,477 + -0.3 140,478 - +0.0 140,478 - -0.1 140,532 + -0.3 140,532 + -0.6 140,532 + -1.1 140,533 - -1.7 140,735 + GFF5040 0.16 -1.3 140,735 + GFF5040 0.16 -0.5 140,736 - GFF5040 0.16 +0.7 140,768 + GFF5040 0.18 +0.5 140,769 - GFF5040 0.18 +1.3 140,855 + GFF5040 0.23 -1.3 140,855 + GFF5040 0.23 +0.3 140,855 + GFF5040 0.23 -0.8 140,855 + GFF5040 0.23 +0.4 140,855 + GFF5040 0.23 -0.8 140,855 + GFF5040 0.23 -0.4 140,855 + GFF5040 0.23 +0.4 140,855 + GFF5040 0.23 -1.4 140,856 - GFF5040 0.23 -1.0 140,856 - GFF5040 0.23 -0.4 140,856 - GFF5040 0.23 -1.1 141,011 + GFF5040 0.33 +0.0 141,011 + GFF5040 0.33 -0.3 141,011 + GFF5040 0.33 -2.3 141,011 + GFF5040 0.33 +0.3 141,011 + GFF5040 0.33 -0.0 141,012 - GFF5040 0.33 -1.8 141,012 - GFF5040 0.33 -1.2 141,012 - GFF5040 0.33 -1.0 141,012 - GFF5040 0.33 -1.3 141,012 - GFF5040 0.33 -0.4 141,012 - GFF5040 0.33 -1.3 141,012 - GFF5040 0.33 +0.4 141,107 + GFF5040 0.39 -0.6 141,107 + GFF5040 0.39 -1.4 141,107 + GFF5040 0.39 -1.5 141,107 + GFF5040 0.39 -0.6 141,108 - GFF5040 0.39 -0.6 141,108 - GFF5040 0.39 -2.1 141,108 - GFF5040 0.39 +0.3 141,108 - GFF5040 0.39 +0.4 141,108 - GFF5040 0.39 -1.4 141,108 - GFF5040 0.39 -0.7 141,108 - GFF5040 0.39 -0.6 141,182 + GFF5040 0.43 +1.2 141,182 + GFF5040 0.43 -1.4 141,182 + GFF5040 0.43 -1.1 141,482 + GFF5040 0.62 -0.8 141,482 + GFF5040 0.62 -0.7 141,483 - GFF5040 0.62 -1.0 141,483 - GFF5040 0.62 -1.6 141,483 - GFF5040 0.62 -1.7 141,483 - GFF5040 0.62 +0.1 141,551 + GFF5040 0.66 -0.3 141,551 + GFF5040 0.66 -1.0 141,552 - GFF5040 0.66 -0.9 141,711 - GFF5040 0.76 -1.7 141,711 - GFF5040 0.76 +0.3 141,795 - GFF5040 0.81 -1.8 141,818 + GFF5040 0.82 -0.4 141,818 + GFF5040 0.82 -1.5 141,818 + GFF5040 0.82 -1.2 141,818 + GFF5040 0.82 -0.5 141,818 + GFF5040 0.82 -0.6 141,818 + GFF5040 0.82 +0.3 141,818 + GFF5040 0.82 -0.3 141,818 + GFF5040 0.82 -1.5 141,819 - GFF5040 0.82 -1.5 141,819 - GFF5040 0.82 +0.6 141,819 - GFF5040 0.82 -0.3 141,819 - GFF5040 0.82 -1.1 141,819 - GFF5040 0.82 +0.2 141,819 - GFF5040 0.82 -0.5 141,819 - GFF5040 0.82 +1.2 141,869 + GFF5040 0.85 +1.7 141,914 + GFF5040 0.88 -0.3 141,914 + GFF5040 0.88 +0.7 141,915 - GFF5040 0.88 -2.2 141,915 - GFF5040 0.88 -0.3 141,915 - GFF5040 0.88 -0.0 141,915 - GFF5040 0.88 +0.1 141,915 - GFF5040 0.88 -0.1 141,915 - GFF5040 0.88 -0.4 141,915 - GFF5040 0.88 -1.6 141,947 + -0.5 141,947 + -1.2 141,947 + -0.8 141,947 + +0.8 141,947 + -0.3 141,947 + -0.1 141,947 + +1.2 141,948 - -1.1 141,948 - -1.4 141,948 - -0.7 141,953 + -1.6 141,953 + +0.2 141,954 - -1.0 141,954 - -1.3 141,980 + -1.1 141,980 + -2.2 141,980 + +1.2 141,980 + -0.1 141,981 - -2.1 141,981 - -0.8 142,086 - -1.4 142,086 - +0.5 142,086 - +0.7 142,086 - -0.5 142,086 - -0.6 142,086 - -0.1 142,187 + -0.8 142,187 + -0.6 142,187 + +0.3 142,187 + -0.1 142,187 + -0.7 142,187 + -1.7 142,187 + -1.7 142,188 - -1.6 142,188 - -0.7 142,188 - +0.0 142,268 + +0.7 142,268 + -0.1 142,268 + +1.2 142,268 + +0.5 142,269 - -0.2 142,269 - -0.2 142,269 - -1.2 142,269 - -0.9 142,269 - +0.5 142,269 - -0.2 142,292 + +0.7 142,544 + GFF5041 0.24 -0.3 142,544 + GFF5041 0.24 -0.3 142,544 + GFF5041 0.24 +0.5 142,544 + GFF5041 0.24 -0.3 142,544 + GFF5041 0.24 +0.4 142,544 + GFF5041 0.24 -0.0 142,545 - GFF5041 0.24 +0.2 142,545 - GFF5041 0.24 -0.6 142,545 - GFF5041 0.24 +0.3 142,545 - GFF5041 0.24 -0.1 142,545 - GFF5041 0.24 -1.1 142,545 - GFF5041 0.24 -0.2 142,545 - GFF5041 0.24 +0.1 142,545 - GFF5041 0.24 -0.3 142,545 - GFF5041 0.24 -0.8 142,545 - GFF5041 0.24 +0.1 142,545 - GFF5041 0.24 +0.6 142,545 - GFF5041 0.24 -0.1 142,689 - GFF5041 0.33 -0.8 142,689 - GFF5041 0.33 +1.7 142,689 - GFF5041 0.33 -0.6 142,689 - GFF5041 0.33 +0.1 142,689 - GFF5041 0.33 +0.0 142,689 - GFF5041 0.33 +0.7 142,992 - GFF5041 0.53 -0.7 142,997 + GFF5041 0.54 +0.6 142,997 + GFF5041 0.54 +0.7 142,997 + GFF5041 0.54 +0.4 142,997 + GFF5041 0.54 +0.2 142,997 + GFF5041 0.54 +0.5 142,997 + GFF5041 0.54 +0.4 142,997 + GFF5041 0.54 +0.2 142,997 + GFF5041 0.54 +0.8 142,997 + GFF5041 0.54 -0.2 142,997 + GFF5041 0.54 -0.6 142,997 + GFF5041 0.54 +1.0 142,997 + GFF5041 0.54 +0.7 142,997 + GFF5041 0.54 -0.0 142,997 + GFF5041 0.54 -0.3 142,997 + GFF5041 0.54 +0.7 142,997 + GFF5041 0.54 +0.1 142,997 + GFF5041 0.54 -0.0 142,997 + GFF5041 0.54 +1.2 142,998 - GFF5041 0.54 +0.5 142,998 - GFF5041 0.54 +0.3 142,998 - GFF5041 0.54 +0.4 142,998 - GFF5041 0.54 -0.7 142,998 - GFF5041 0.54 -0.1 142,998 - GFF5041 0.54 +0.4 142,998 - GFF5041 0.54 +0.9 142,998 - GFF5041 0.54 +0.2 142,998 - GFF5041 0.54 +0.6 142,998 - GFF5041 0.54 -0.3 142,998 - GFF5041 0.54 +0.3 142,998 - GFF5041 0.54 -0.4 142,998 - GFF5041 0.54 +0.2 142,998 - GFF5041 0.54 +0.2 142,998 - GFF5041 0.54 -0.2
Or see this region's nucleotide sequence