Strain Fitness in Variovorax sp. SCN45 around GFF4734

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
97,964	+				-0.3
97,964	+				+0.2
97,965	-				-0.7
97,965	-				+0.3
97,965	-				-0.3
97,965	-				-0.9
97,982	+				+0.5
97,983	-				+1.3
98,258	+		GFF4733	0.37	-0.5
98,259	-		GFF4733	0.37	-0.7
98,345	+		GFF4733	0.48	+0.2
98,480	+		GFF4733	0.65	-0.3
98,481	-		GFF4733	0.65	-1.0
98,609	+		GFF4733	0.82	+1.7
98,609	+		GFF4733	0.82	-0.7
98,610	-		GFF4733	0.82	-0.5
98,610	-		GFF4733	0.82	+1.3
98,921	-				-1.9
98,944	+				-0.7
98,944	+				-2.1
98,944	+				-0.4
98,945	-				-0.3
98,945	-				+2.3
98,965	+				-0.2
98,966	-				+0.3
99,007	+		GFF4734	0.10	-1.3
99,008	-		GFF4734	0.10	-1.0
99,008	-		GFF4734	0.10	-0.9
99,084	+		GFF4734	0.13	-0.0
99,084	+		GFF4734	0.13	+0.3
99,085	-		GFF4734	0.14	-1.3
99,088	+		GFF4734	0.14	-0.3
99,088	+		GFF4734	0.14	-1.2
99,088	+		GFF4734	0.14	+0.3
99,088	+		GFF4734	0.14	-0.1
99,088	+		GFF4734	0.14	-0.1
99,088	+		GFF4734	0.14	-0.5
99,089	-		GFF4734	0.14	-1.0
99,089	-		GFF4734	0.14	+0.8
99,196	+		GFF4734	0.18	+0.1
99,196	+		GFF4734	0.18	-0.2
99,197	-		GFF4734	0.18	-0.8
99,311	-		GFF4734	0.23	+0.2
99,424	+		GFF4734	0.27	-0.9
99,502	+		GFF4734	0.30	+0.1
99,502	+		GFF4734	0.30	-1.3
99,502	+		GFF4734	0.30	-0.0
99,502	+		GFF4734	0.30	-1.3
99,503	-		GFF4734	0.30	-0.3
99,503	-		GFF4734	0.30	+1.0
99,598	+		GFF4734	0.34	-1.2
99,598	+		GFF4734	0.34	-0.0
99,599	-		GFF4734	0.34	-0.3
99,601	+		GFF4734	0.34	-0.3
99,601	+		GFF4734	0.34	+0.4
99,601	+		GFF4734	0.34	+0.3
99,601	+		GFF4734	0.34	-0.0
99,601	+		GFF4734	0.34	-0.9
99,601	+		GFF4734	0.34	-1.1
99,601	+		GFF4734	0.34	-0.5
99,602	-		GFF4734	0.34	-0.9
99,602	-		GFF4734	0.34	-0.7
99,682	+		GFF4734	0.38	-0.8
99,682	+		GFF4734	0.38	+0.1
99,769	+		GFF4734	0.41	+1.0
99,770	-		GFF4734	0.41	-0.3
100,067	-		GFF4734	0.53	-0.3
100,067	-		GFF4734	0.53	+0.5
100,141	+		GFF4734	0.56	-1.9
100,142	-		GFF4734	0.56	-0.0
100,264	+		GFF4734	0.61	-1.5
100,264	+		GFF4734	0.61	-0.9
100,264	+		GFF4734	0.61	+0.5
100,265	-		GFF4734	0.61	+0.4
100,378	+		GFF4734	0.66	+0.1
100,378	+		GFF4734	0.66	+0.7
100,379	-		GFF4734	0.66	+1.3
100,901	-		GFF4734	0.87	-0.3
101,077	+				-0.5
101,077	+				-2.1
101,077	+				-0.5
101,078	-				-1.0
101,078	-				+0.1
101,116	+				+0.9
101,116	+				+1.0
101,116	+				-0.6
101,281	+				-0.1
101,281	+				+1.5
101,282	-				-1.3
101,317	+				-1.0
101,317	+				-2.0
101,317	+				-0.9
101,317	+				+0.4
101,318	-				-0.8
101,749	+		GFF4735	0.62	+0.5
101,749	+		GFF4735	0.62	-0.4
101,749	+		GFF4735	0.62	-1.1
101,749	+		GFF4735	0.62	-0.3
101,750	-		GFF4735	0.62	-1.9
101,750	-		GFF4735	0.62	+0.8
101,751	+		GFF4735	0.63	-0.2
101,751	+		GFF4735	0.63	-0.7
101,751	+		GFF4735	0.63	-0.3
101,751	+		GFF4735	0.63	+0.7
101,751	+		GFF4735	0.63	+1.6
101,751	+		GFF4735	0.63	+1.7
101,751	+		GFF4735	0.63	+0.3
101,751	+		GFF4735	0.63	+0.0
101,752	-		GFF4735	0.63	-0.3
101,752	-		GFF4735	0.63	-0.7
101,752	-		GFF4735	0.63	-0.5
101,752	-		GFF4735	0.63	-0.8
102,034	+				-2.0
102,034	+				+0.3
102,034	+				+0.1
102,035	-				-0.1