Strain Fitness in Variovorax sp. SCN45 around GFF4608

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4606 and GFF4607 overlap by 4 nucleotidesGFF4607 and GFF4608 are separated by 62 nucleotidesGFF4608 and GFF4609 are separated by 39 nucleotidesGFF4609 and GFF4610 are separated by 47 nucleotides GFF4606 - 3-ketoacyl-CoA thiolase [fadN-fadA-fadE operon] (EC 2.3.1.16), at 247,365 to 248,561 GFF4606 GFF4607 - Putative DNA methylase, at 248,558 to 248,974 GFF4607 GFF4608 - 3-hydroxyacyl-CoA dehydrogenase [fadN-fadA-fadE operon] (EC 1.1.1.35) / Enoyl-CoA hydratase [fadN-fadA-fadE operon] (EC 4.2.1.17), at 249,037 to 251,436 GFF4608 GFF4609 - FIG00581832: hypothetical protein, at 251,476 to 251,910 GFF4609 GFF4610 - Long chain acyl-CoA dehydrogenase [fadN-fadA-fadE operon] (EC 1.3.8.8), at 251,958 to 253,754 GFF4610 Position (kb) 249 250 251 252Strain fitness (log2 ratio) -2 -1 0 1 2at 248.479 kb on + strandat 248.539 kb on + strandat 248.539 kb on + strandat 248.539 kb on + strandat 248.539 kb on + strandat 248.539 kb on + strandat 248.539 kb on + strandat 248.540 kb on - strandat 248.540 kb on - strandat 248.540 kb on - strandat 248.540 kb on - strandat 248.540 kb on - strandat 248.540 kb on - strandat 248.705 kb on + strand, within GFF4607at 248.751 kb on + strand, within GFF4607at 248.752 kb on - strand, within GFF4607at 248.829 kb on + strand, within GFF4607at 248.829 kb on + strand, within GFF4607at 248.829 kb on + strand, within GFF4607at 248.829 kb on + strand, within GFF4607at 248.830 kb on - strand, within GFF4607at 248.830 kb on - strand, within GFF4607at 248.830 kb on - strand, within GFF4607at 248.830 kb on - strand, within GFF4607at 248.830 kb on - strand, within GFF4607at 248.830 kb on - strand, within GFF4607at 248.830 kb on - strand, within GFF4607at 248.974 kb on + strandat 248.975 kb on - strandat 249.143 kb on + strandat 249.143 kb on + strandat 249.143 kb on + strandat 249.144 kb on - strandat 249.371 kb on + strand, within GFF4608at 249.371 kb on + strand, within GFF4608at 249.371 kb on + strand, within GFF4608at 249.371 kb on + strand, within GFF4608at 249.372 kb on - strand, within GFF4608at 249.372 kb on - strand, within GFF4608at 249.372 kb on - strand, within GFF4608at 249.372 kb on - strand, within GFF4608at 249.419 kb on + strand, within GFF4608at 249.420 kb on - strand, within GFF4608at 249.420 kb on - strand, within GFF4608at 249.554 kb on + strand, within GFF4608at 249.554 kb on + strand, within GFF4608at 249.554 kb on + strand, within GFF4608at 249.554 kb on + strand, within GFF4608at 249.554 kb on + strand, within GFF4608at 249.555 kb on - strand, within GFF4608at 249.555 kb on - strand, within GFF4608at 249.555 kb on - strand, within GFF4608at 249.611 kb on + strand, within GFF4608at 249.612 kb on - strand, within GFF4608at 249.612 kb on - strand, within GFF4608at 249.612 kb on - strand, within GFF4608at 249.612 kb on - strand, within GFF4608at 249.644 kb on + strand, within GFF4608at 249.644 kb on + strand, within GFF4608at 249.860 kb on + strand, within GFF4608at 249.860 kb on + strand, within GFF4608at 249.861 kb on - strand, within GFF4608at 249.861 kb on - strand, within GFF4608at 249.861 kb on - strand, within GFF4608at 249.861 kb on - strand, within GFF4608at 250.472 kb on + strand, within GFF4608at 250.472 kb on + strand, within GFF4608at 250.505 kb on + strand, within GFF4608at 250.506 kb on - strand, within GFF4608at 250.506 kb on - strand, within GFF4608at 250.638 kb on - strand, within GFF4608at 250.979 kb on + strand, within GFF4608at 250.979 kb on + strand, within GFF4608at 250.979 kb on + strand, within GFF4608at 250.979 kb on + strand, within GFF4608at 250.980 kb on - strand, within GFF4608at 250.980 kb on - strand, within GFF4608at 251.123 kb on + strand, within GFF4608at 251.123 kb on + strand, within GFF4608at 251.123 kb on + strand, within GFF4608at 251.123 kb on + strand, within GFF4608at 251.123 kb on + strand, within GFF4608at 251.207 kb on + strandat 251.207 kb on + strandat 251.207 kb on + strandat 251.208 kb on - strandat 251.446 kb on + strandat 251.446 kb on + strandat 251.446 kb on + strandat 251.447 kb on - strandat 251.447 kb on - strandat 251.447 kb on - strandat 251.447 kb on - strandat 251.447 kb on - strandat 251.447 kb on - strandat 251.447 kb on - strandat 251.477 kb on + strandat 251.477 kb on + strandat 251.477 kb on + strandat 251.478 kb on - strandat 251.478 kb on - strandat 251.949 kb on + strandat 251.949 kb on + strandat 251.949 kb on + strandat 251.949 kb on + strandat 251.949 kb on + strandat 251.949 kb on + strandat 251.950 kb on - strandat 251.950 kb on - strandat 251.950 kb on - strandat 251.950 kb on - strandat 251.950 kb on - strandat 251.950 kb on - strandat 251.950 kb on - strandat 251.950 kb on - strandat 251.950 kb on - strandat 251.952 kb on + strandat 251.952 kb on + strandat 251.953 kb on - strandat 251.953 kb on - strandat 252.052 kb on + strandat 252.053 kb on - strandat 252.053 kb on - strandat 252.053 kb on - strandat 252.053 kb on - strandat 252.082 kb on + strandat 252.083 kb on - strandat 252.083 kb on - strandat 252.083 kb on - strandat 252.181 kb on + strand, within GFF4610at 252.182 kb on - strand, within GFF4610at 252.182 kb on - strand, within GFF4610at 252.430 kb on + strand, within GFF4610at 252.430 kb on + strand, within GFF4610at 252.430 kb on + strand, within GFF4610at 252.430 kb on + strand, within GFF4610at 252.431 kb on - strand, within GFF4610at 252.431 kb on - strand, within GFF4610at 252.431 kb on - strand, within GFF4610at 252.431 kb on - strand, within GFF4610at 252.431 kb on - strand, within GFF4610at 252.431 kb on - strand, within GFF4610at 252.431 kb on - strand, within GFF4610at 252.431 kb on - strand, within GFF4610at 252.431 kb on - strand, within GFF4610

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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248,479 + -0.6
248,539 + -1.6
248,539 + +0.4
248,539 + -0.6
248,539 + +1.2
248,539 + -0.0
248,539 + +0.5
248,540 - -0.8
248,540 - -0.3
248,540 - +1.0
248,540 - -1.9
248,540 - -1.8
248,540 - -0.0
248,705 + GFF4607 0.35 +0.2
248,751 + GFF4607 0.46 +0.6
248,752 - GFF4607 0.47 +0.4
248,829 + GFF4607 0.65 -0.2
248,829 + GFF4607 0.65 -2.7
248,829 + GFF4607 0.65 +0.9
248,829 + GFF4607 0.65 +2.3
248,830 - GFF4607 0.65 +0.4
248,830 - GFF4607 0.65 +0.4
248,830 - GFF4607 0.65 +0.2
248,830 - GFF4607 0.65 -0.2
248,830 - GFF4607 0.65 -0.1
248,830 - GFF4607 0.65 -0.5
248,830 - GFF4607 0.65 -1.0
248,974 + -0.9
248,975 - +0.1
249,143 + -0.7
249,143 + -0.2
249,143 + -1.1
249,144 - +0.8
249,371 + GFF4608 0.14 -1.4
249,371 + GFF4608 0.14 +0.2
249,371 + GFF4608 0.14 -1.8
249,371 + GFF4608 0.14 +0.9
249,372 - GFF4608 0.14 +0.1
249,372 - GFF4608 0.14 -0.5
249,372 - GFF4608 0.14 +1.1
249,372 - GFF4608 0.14 -0.5
249,419 + GFF4608 0.16 -0.6
249,420 - GFF4608 0.16 +0.3
249,420 - GFF4608 0.16 -0.1
249,554 + GFF4608 0.22 -0.2
249,554 + GFF4608 0.22 -0.8
249,554 + GFF4608 0.22 +0.6
249,554 + GFF4608 0.22 -0.3
249,554 + GFF4608 0.22 -0.1
249,555 - GFF4608 0.22 -0.2
249,555 - GFF4608 0.22 -0.5
249,555 - GFF4608 0.22 -0.3
249,611 + GFF4608 0.24 -0.2
249,612 - GFF4608 0.24 -0.3
249,612 - GFF4608 0.24 +0.3
249,612 - GFF4608 0.24 -0.3
249,612 - GFF4608 0.24 +0.2
249,644 + GFF4608 0.25 -0.9
249,644 + GFF4608 0.25 +1.1
249,860 + GFF4608 0.34 +0.1
249,860 + GFF4608 0.34 -0.4
249,861 - GFF4608 0.34 +0.3
249,861 - GFF4608 0.34 +0.4
249,861 - GFF4608 0.34 +0.3
249,861 - GFF4608 0.34 -0.4
250,472 + GFF4608 0.60 -0.7
250,472 + GFF4608 0.60 +0.3
250,505 + GFF4608 0.61 -0.4
250,506 - GFF4608 0.61 +0.8
250,506 - GFF4608 0.61 -0.9
250,638 - GFF4608 0.67 -1.8
250,979 + GFF4608 0.81 +0.3
250,979 + GFF4608 0.81 -0.0
250,979 + GFF4608 0.81 -0.3
250,979 + GFF4608 0.81 -0.5
250,980 - GFF4608 0.81 +0.1
250,980 - GFF4608 0.81 +0.5
251,123 + GFF4608 0.87 -0.1
251,123 + GFF4608 0.87 -0.1
251,123 + GFF4608 0.87 +0.8
251,123 + GFF4608 0.87 -0.4
251,123 + GFF4608 0.87 -0.6
251,207 + -0.9
251,207 + +0.3
251,207 + +0.7
251,208 - +0.1
251,446 + -0.1
251,446 + +0.2
251,446 + -0.1
251,447 - -0.3
251,447 - +0.9
251,447 - -0.4
251,447 - +0.1
251,447 - +0.0
251,447 - -2.4
251,447 - +0.7
251,477 + +0.1
251,477 + -0.2
251,477 + -0.5
251,478 - -0.5
251,478 - +0.1
251,949 + -0.7
251,949 + -0.2
251,949 + -0.8
251,949 + -0.7
251,949 + -1.8
251,949 + -0.4
251,950 - +1.0
251,950 - +1.1
251,950 - -0.2
251,950 - -0.8
251,950 - -0.5
251,950 - -0.4
251,950 - -0.6
251,950 - -1.3
251,950 - +0.2
251,952 + -1.5
251,952 + -0.9
251,953 - +0.6
251,953 - -0.0
252,052 + -2.1
252,053 - -0.2
252,053 - +0.6
252,053 - +1.6
252,053 - -0.7
252,082 + -0.6
252,083 - -0.2
252,083 - -0.3
252,083 - -0.5
252,181 + GFF4610 0.12 -0.5
252,182 - GFF4610 0.12 -0.3
252,182 - GFF4610 0.12 -0.4
252,430 + GFF4610 0.26 -2.0
252,430 + GFF4610 0.26 -0.7
252,430 + GFF4610 0.26 -0.2
252,430 + GFF4610 0.26 -2.3
252,431 - GFF4610 0.26 -0.8
252,431 - GFF4610 0.26 -0.1
252,431 - GFF4610 0.26 -1.2
252,431 - GFF4610 0.26 -1.0
252,431 - GFF4610 0.26 -0.4
252,431 - GFF4610 0.26 -0.6
252,431 - GFF4610 0.26 -1.0
252,431 - GFF4610 0.26 +0.7
252,431 - GFF4610 0.26 +0.1

Or see this region's nucleotide sequence