Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3913 and GFF3914 are separated by 19 nucleotides GFF3914 and GFF3915 are separated by 52 nucleotides
GFF3913 - Ferrous iron transport periplasmic protein EfeO, contains peptidase-M75 domain and (frequently) cupredoxin-like domain, at 118,588 to 119,778
GFF3913
GFF3914 - Ferrous iron transport peroxidase EfeB, at 119,798 to 121,123
GFF3914
GFF3915 - Ferrous iron transport periplasmic protein EfeO, contains peptidase-M75 domain and (frequently) cupredoxin-like domain, at 121,176 to 122,012
GFF3915
Position (kb) 119
120
121
122 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 119.047 kb on + strand, within GFF3913 at 119.047 kb on + strand, within GFF3913 at 119.047 kb on + strand, within GFF3913 at 119.047 kb on + strand, within GFF3913 at 119.047 kb on + strand, within GFF3913 at 119.047 kb on + strand, within GFF3913 at 119.047 kb on + strand, within GFF3913 at 119.047 kb on + strand, within GFF3913 at 119.047 kb on + strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.068 kb on + strand, within GFF3913 at 119.068 kb on + strand, within GFF3913 at 119.068 kb on + strand, within GFF3913 at 119.069 kb on - strand, within GFF3913 at 119.069 kb on - strand, within GFF3913 at 119.170 kb on + strand, within GFF3913 at 119.170 kb on + strand, within GFF3913 at 119.170 kb on + strand, within GFF3913 at 119.170 kb on + strand, within GFF3913 at 119.170 kb on + strand, within GFF3913 at 119.170 kb on + strand, within GFF3913 at 119.170 kb on + strand, within GFF3913 at 119.170 kb on + strand, within GFF3913 at 119.171 kb on - strand, within GFF3913 at 119.171 kb on - strand, within GFF3913 at 119.171 kb on - strand, within GFF3913 at 119.171 kb on - strand, within GFF3913 at 119.171 kb on - strand, within GFF3913 at 119.171 kb on - strand, within GFF3913 at 119.171 kb on - strand, within GFF3913 at 119.191 kb on + strand, within GFF3913 at 119.191 kb on + strand, within GFF3913 at 119.191 kb on + strand, within GFF3913 at 119.191 kb on + strand, within GFF3913 at 119.191 kb on + strand, within GFF3913 at 119.192 kb on - strand, within GFF3913 at 119.192 kb on - strand, within GFF3913 at 119.192 kb on - strand, within GFF3913 at 119.260 kb on + strand, within GFF3913 at 119.261 kb on - strand, within GFF3913 at 119.314 kb on + strand, within GFF3913 at 119.314 kb on + strand, within GFF3913 at 119.315 kb on - strand, within GFF3913 at 119.323 kb on + strand, within GFF3913 at 119.323 kb on + strand, within GFF3913 at 119.323 kb on + strand, within GFF3913 at 119.324 kb on - strand, within GFF3913 at 119.324 kb on - strand, within GFF3913 at 119.324 kb on - strand, within GFF3913 at 119.324 kb on - strand, within GFF3913 at 119.324 kb on - strand, within GFF3913 at 119.536 kb on + strand, within GFF3913 at 119.536 kb on + strand, within GFF3913 at 119.536 kb on + strand, within GFF3913 at 119.536 kb on + strand, within GFF3913 at 119.536 kb on + strand, within GFF3913 at 119.536 kb on + strand, within GFF3913 at 119.536 kb on + strand, within GFF3913 at 119.536 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.538 kb on - strand, within GFF3913 at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 120.080 kb on + strand, within GFF3914 at 120.080 kb on + strand, within GFF3914 at 120.080 kb on + strand, within GFF3914 at 120.080 kb on + strand, within GFF3914 at 120.080 kb on + strand, within GFF3914 at 120.081 kb on - strand, within GFF3914 at 120.081 kb on - strand, within GFF3914 at 120.081 kb on - strand, within GFF3914 at 120.081 kb on - strand, within GFF3914 at 120.081 kb on - strand, within GFF3914 at 120.081 kb on - strand, within GFF3914 at 120.653 kb on + strand, within GFF3914 at 120.653 kb on + strand, within GFF3914 at 120.653 kb on + strand, within GFF3914 at 120.653 kb on + strand, within GFF3914 at 120.654 kb on - strand, within GFF3914 at 120.654 kb on - strand, within GFF3914 at 120.794 kb on + strand, within GFF3914 at 120.794 kb on + strand, within GFF3914 at 120.794 kb on + strand, within GFF3914 at 120.905 kb on + strand, within GFF3914 at 120.906 kb on - strand, within GFF3914 at 120.906 kb on - strand, within GFF3914 at 120.962 kb on + strand, within GFF3914 at 121.031 kb on + strand at 121.031 kb on + strand at 121.031 kb on + strand at 121.031 kb on + strand at 121.031 kb on + strand at 121.031 kb on + strand at 121.031 kb on + strand at 121.032 kb on - strand at 121.032 kb on - strand at 121.032 kb on - strand at 121.032 kb on - strand at 121.166 kb on + strand at 121.166 kb on + strand at 121.166 kb on + strand at 121.166 kb on + strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.167 kb on - strand at 121.236 kb on + strand at 121.236 kb on + strand at 121.236 kb on + strand at 121.236 kb on + strand at 121.236 kb on + strand at 121.236 kb on + strand at 121.236 kb on + strand at 121.237 kb on - strand at 121.237 kb on - strand at 121.237 kb on - strand at 121.237 kb on - strand at 121.296 kb on + strand, within GFF3915 at 121.296 kb on + strand, within GFF3915 at 121.296 kb on + strand, within GFF3915 at 121.297 kb on - strand, within GFF3915 at 121.297 kb on - strand, within GFF3915 at 121.305 kb on + strand, within GFF3915 at 121.305 kb on + strand, within GFF3915 at 121.305 kb on + strand, within GFF3915 at 121.305 kb on + strand, within GFF3915 at 121.305 kb on + strand, within GFF3915 at 121.305 kb on + strand, within GFF3915 at 121.305 kb on + strand, within GFF3915 at 121.305 kb on + strand, within GFF3915 at 121.306 kb on - strand, within GFF3915 at 121.306 kb on - strand, within GFF3915 at 121.306 kb on - strand, within GFF3915 at 121.306 kb on - strand, within GFF3915 at 121.306 kb on - strand, within GFF3915 at 121.306 kb on - strand, within GFF3915 at 121.306 kb on - strand, within GFF3915 at 121.398 kb on + strand, within GFF3915 at 121.398 kb on + strand, within GFF3915 at 121.398 kb on + strand, within GFF3915 at 121.398 kb on + strand, within GFF3915 at 121.398 kb on + strand, within GFF3915 at 121.399 kb on - strand, within GFF3915 at 121.399 kb on - strand, within GFF3915 at 121.419 kb on + strand, within GFF3915 at 121.419 kb on + strand, within GFF3915 at 121.419 kb on + strand, within GFF3915 at 121.419 kb on + strand, within GFF3915 at 121.419 kb on + strand, within GFF3915 at 121.419 kb on + strand, within GFF3915 at 121.420 kb on - strand, within GFF3915 at 121.420 kb on - strand, within GFF3915 at 121.420 kb on - strand, within GFF3915 at 121.420 kb on - strand, within GFF3915 at 121.420 kb on - strand, within GFF3915 at 121.420 kb on - strand, within GFF3915 at 121.542 kb on + strand, within GFF3915 at 121.543 kb on - strand, within GFF3915 at 121.729 kb on - strand, within GFF3915 at 121.729 kb on - strand, within GFF3915 at 121.729 kb on - strand, within GFF3915 at 121.776 kb on + strand, within GFF3915 at 121.776 kb on + strand, within GFF3915 at 121.777 kb on - strand, within GFF3915 at 121.777 kb on - strand, within GFF3915 at 121.777 kb on - strand, within GFF3915 at 121.881 kb on + strand, within GFF3915 at 121.881 kb on + strand, within GFF3915 at 121.881 kb on + strand, within GFF3915 at 121.881 kb on + strand, within GFF3915 at 121.881 kb on + strand, within GFF3915 at 121.881 kb on + strand, within GFF3915 at 121.881 kb on + strand, within GFF3915 at 121.881 kb on + strand, within GFF3915 at 121.881 kb on + strand, within GFF3915 at 121.882 kb on - strand, within GFF3915 at 121.882 kb on - strand, within GFF3915 at 121.882 kb on - strand, within GFF3915 at 121.882 kb on - strand, within GFF3915 at 121.882 kb on - strand, within GFF3915 at 121.882 kb on - strand, within GFF3915 at 121.882 kb on - strand, within GFF3915 at 121.882 kb on - strand, within GFF3915 at 121.911 kb on + strand, within GFF3915 at 121.911 kb on + strand, within GFF3915 at 121.912 kb on - strand, within GFF3915 at 121.912 kb on - strand, within GFF3915 at 121.912 kb on - strand, within GFF3915 at 121.912 kb on - strand, within GFF3915 at 121.912 kb on - strand, within GFF3915 at 122.010 kb on + strand at 122.010 kb on + strand at 122.011 kb on - strand at 122.011 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 119,047 + GFF3913 0.39 -0.3 119,047 + GFF3913 0.39 -0.6 119,047 + GFF3913 0.39 -0.1 119,047 + GFF3913 0.39 -1.5 119,047 + GFF3913 0.39 -0.1 119,047 + GFF3913 0.39 +1.1 119,047 + GFF3913 0.39 -0.7 119,047 + GFF3913 0.39 +0.1 119,047 + GFF3913 0.39 -0.2 119,048 - GFF3913 0.39 -0.6 119,048 - GFF3913 0.39 +0.5 119,048 - GFF3913 0.39 +1.5 119,048 - GFF3913 0.39 +1.4 119,048 - GFF3913 0.39 +0.4 119,048 - GFF3913 0.39 -1.9 119,048 - GFF3913 0.39 +0.9 119,048 - GFF3913 0.39 -0.8 119,048 - GFF3913 0.39 -0.3 119,048 - GFF3913 0.39 -0.7 119,068 + GFF3913 0.40 -0.2 119,068 + GFF3913 0.40 +0.4 119,068 + GFF3913 0.40 -0.1 119,069 - GFF3913 0.40 -1.0 119,069 - GFF3913 0.40 -0.2 119,170 + GFF3913 0.49 +0.5 119,170 + GFF3913 0.49 -1.5 119,170 + GFF3913 0.49 +0.3 119,170 + GFF3913 0.49 -0.6 119,170 + GFF3913 0.49 +1.6 119,170 + GFF3913 0.49 -0.3 119,170 + GFF3913 0.49 -0.2 119,170 + GFF3913 0.49 -0.0 119,171 - GFF3913 0.49 -0.8 119,171 - GFF3913 0.49 +0.5 119,171 - GFF3913 0.49 +0.0 119,171 - GFF3913 0.49 +0.2 119,171 - GFF3913 0.49 -0.1 119,171 - GFF3913 0.49 -1.2 119,171 - GFF3913 0.49 -0.0 119,191 + GFF3913 0.51 -1.5 119,191 + GFF3913 0.51 +0.3 119,191 + GFF3913 0.51 -0.2 119,191 + GFF3913 0.51 -1.3 119,191 + GFF3913 0.51 -1.1 119,192 - GFF3913 0.51 +0.1 119,192 - GFF3913 0.51 +0.3 119,192 - GFF3913 0.51 -0.6 119,260 + GFF3913 0.56 -0.1 119,261 - GFF3913 0.57 -0.2 119,314 + GFF3913 0.61 -0.3 119,314 + GFF3913 0.61 +1.2 119,315 - GFF3913 0.61 -1.1 119,323 + GFF3913 0.62 -0.2 119,323 + GFF3913 0.62 -1.9 119,323 + GFF3913 0.62 -1.1 119,324 - GFF3913 0.62 -0.8 119,324 - GFF3913 0.62 +0.6 119,324 - GFF3913 0.62 -0.9 119,324 - GFF3913 0.62 +1.0 119,324 - GFF3913 0.62 +2.9 119,536 + GFF3913 0.80 -0.1 119,536 + GFF3913 0.80 -0.5 119,536 + GFF3913 0.80 +0.5 119,536 + GFF3913 0.80 +0.2 119,536 + GFF3913 0.80 -0.5 119,536 + GFF3913 0.80 +1.9 119,536 + GFF3913 0.80 -0.2 119,536 - GFF3913 0.80 -0.2 119,537 - GFF3913 0.80 -0.0 119,537 - GFF3913 0.80 -0.6 119,537 - GFF3913 0.80 -0.8 119,537 - GFF3913 0.80 -0.9 119,537 - GFF3913 0.80 +0.8 119,537 - GFF3913 0.80 +0.0 119,537 - GFF3913 0.80 -0.9 119,537 - GFF3913 0.80 -0.1 119,537 - GFF3913 0.80 +0.2 119,537 - GFF3913 0.80 +0.3 119,537 - GFF3913 0.80 -0.2 119,537 - GFF3913 0.80 +1.2 119,538 - GFF3913 0.80 +0.1 119,781 + -0.5 119,781 + +0.0 119,781 + +0.9 119,781 + -1.6 119,781 + +0.3 119,781 + +0.3 119,781 + +0.1 119,781 + -1.2 119,781 + -1.6 119,781 + -0.5 119,781 + +0.9 119,781 + +0.2 119,781 + +1.0 119,781 + -0.1 119,781 + -1.3 119,782 - +1.1 119,782 - +0.2 119,782 - -0.1 119,782 - +0.0 119,782 - -0.7 119,782 - +0.1 119,782 - -0.8 119,782 - -0.1 119,782 - +0.2 119,782 - -1.6 119,782 - -0.5 119,782 - +0.3 119,782 - -0.1 119,782 - +0.2 119,782 - -0.0 119,782 - +0.2 119,782 - -0.1 119,782 - -0.1 120,080 + GFF3914 0.21 -0.6 120,080 + GFF3914 0.21 +0.7 120,080 + GFF3914 0.21 +0.7 120,080 + GFF3914 0.21 -0.2 120,080 + GFF3914 0.21 -0.6 120,081 - GFF3914 0.21 -0.3 120,081 - GFF3914 0.21 -0.6 120,081 - GFF3914 0.21 +0.0 120,081 - GFF3914 0.21 -0.7 120,081 - GFF3914 0.21 +0.5 120,081 - GFF3914 0.21 +0.2 120,653 + GFF3914 0.64 -0.2 120,653 + GFF3914 0.64 -0.4 120,653 + GFF3914 0.64 +0.3 120,653 + GFF3914 0.64 -0.1 120,654 - GFF3914 0.65 -0.1 120,654 - GFF3914 0.65 -0.1 120,794 + GFF3914 0.75 -0.2 120,794 + GFF3914 0.75 +0.9 120,794 + GFF3914 0.75 +0.5 120,905 + GFF3914 0.83 -0.3 120,906 - GFF3914 0.84 -1.5 120,906 - GFF3914 0.84 -1.6 120,962 + GFF3914 0.88 -0.1 121,031 + +0.4 121,031 + +0.1 121,031 + +0.9 121,031 + -0.3 121,031 + -0.1 121,031 + +0.2 121,031 + -0.6 121,032 - -2.1 121,032 - +0.1 121,032 - -0.1 121,032 - +0.1 121,166 + -0.1 121,166 + -0.3 121,166 + +0.1 121,166 + +0.1 121,167 - -0.5 121,167 - -1.1 121,167 - +0.2 121,167 - +1.2 121,167 - +0.4 121,167 - -0.1 121,167 - +0.1 121,167 - +0.3 121,167 - +0.5 121,167 - -0.7 121,167 - -0.5 121,236 + -0.5 121,236 + +0.7 121,236 + +1.3 121,236 + +0.2 121,236 + +0.1 121,236 + -0.4 121,236 + -1.5 121,237 - +0.6 121,237 - +0.5 121,237 - +0.5 121,237 - +0.9 121,296 + GFF3915 0.14 -1.1 121,296 + GFF3915 0.14 -1.6 121,296 + GFF3915 0.14 -0.8 121,297 - GFF3915 0.14 -0.1 121,297 - GFF3915 0.14 -0.3 121,305 + GFF3915 0.15 +0.1 121,305 + GFF3915 0.15 -0.2 121,305 + GFF3915 0.15 -0.8 121,305 + GFF3915 0.15 +0.2 121,305 + GFF3915 0.15 -0.8 121,305 + GFF3915 0.15 -0.7 121,305 + GFF3915 0.15 -0.6 121,305 + GFF3915 0.15 +0.0 121,306 - GFF3915 0.16 +0.1 121,306 - GFF3915 0.16 -0.1 121,306 - GFF3915 0.16 +1.9 121,306 - GFF3915 0.16 +0.1 121,306 - GFF3915 0.16 -0.1 121,306 - GFF3915 0.16 -0.2 121,306 - GFF3915 0.16 -0.1 121,398 + GFF3915 0.27 -0.4 121,398 + GFF3915 0.27 -1.1 121,398 + GFF3915 0.27 -0.5 121,398 + GFF3915 0.27 -0.7 121,398 + GFF3915 0.27 -0.8 121,399 - GFF3915 0.27 +0.7 121,399 - GFF3915 0.27 +0.2 121,419 + GFF3915 0.29 -0.7 121,419 + GFF3915 0.29 -0.7 121,419 + GFF3915 0.29 +0.7 121,419 + GFF3915 0.29 -0.8 121,419 + GFF3915 0.29 -0.3 121,419 + GFF3915 0.29 +0.5 121,420 - GFF3915 0.29 -1.2 121,420 - GFF3915 0.29 -0.8 121,420 - GFF3915 0.29 -1.1 121,420 - GFF3915 0.29 +0.9 121,420 - GFF3915 0.29 -0.2 121,420 - GFF3915 0.29 -0.5 121,542 + GFF3915 0.44 -0.9 121,543 - GFF3915 0.44 -0.7 121,729 - GFF3915 0.66 +0.0 121,729 - GFF3915 0.66 -0.7 121,729 - GFF3915 0.66 -1.0 121,776 + GFF3915 0.72 -1.2 121,776 + GFF3915 0.72 -0.4 121,777 - GFF3915 0.72 -0.3 121,777 - GFF3915 0.72 +0.9 121,777 - GFF3915 0.72 +0.2 121,881 + GFF3915 0.84 -0.9 121,881 + GFF3915 0.84 -0.9 121,881 + GFF3915 0.84 -1.5 121,881 + GFF3915 0.84 -0.2 121,881 + GFF3915 0.84 -0.2 121,881 + GFF3915 0.84 -0.9 121,881 + GFF3915 0.84 -0.9 121,881 + GFF3915 0.84 -0.5 121,881 + GFF3915 0.84 +0.3 121,882 - GFF3915 0.84 -0.9 121,882 - GFF3915 0.84 -1.1 121,882 - GFF3915 0.84 +1.5 121,882 - GFF3915 0.84 -3.2 121,882 - GFF3915 0.84 +0.1 121,882 - GFF3915 0.84 -0.9 121,882 - GFF3915 0.84 +0.1 121,882 - GFF3915 0.84 +0.6 121,911 + GFF3915 0.88 +0.5 121,911 + GFF3915 0.88 +0.3 121,912 - GFF3915 0.88 -0.3 121,912 - GFF3915 0.88 +1.1 121,912 - GFF3915 0.88 +0.4 121,912 - GFF3915 0.88 -0.1 121,912 - GFF3915 0.88 -0.3 122,010 + -0.9 122,010 + +0.7 122,011 - +0.4 122,011 - +0.1
Or see this region's nucleotide sequence