Strain Fitness in Variovorax sp. SCN45 around GFF3690

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3689 and GFF3690 overlap by 4 nucleotidesGFF3690 and GFF3691 overlap by 41 nucleotides GFF3689 - FIG01198523: hypothetical protein, at 187,944 to 189,146 GFF3689 GFF3690 - ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 189,143 to 190,690 GFF3690 GFF3691 - ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose), at 190,650 to 191,684 GFF3691 Position (kb) 189 190 191Strain fitness (log2 ratio) -3 -2 -1 0 1at 188.311 kb on + strand, within GFF3689at 188.312 kb on - strand, within GFF3689at 188.312 kb on - strand, within GFF3689at 188.312 kb on - strand, within GFF3689at 188.464 kb on - strand, within GFF3689at 188.464 kb on - strand, within GFF3689at 188.479 kb on - strand, within GFF3689at 188.479 kb on - strand, within GFF3689at 188.622 kb on + strand, within GFF3689at 188.622 kb on + strand, within GFF3689at 188.623 kb on - strand, within GFF3689at 189.012 kb on + strand, within GFF3689at 189.012 kb on + strand, within GFF3689at 189.012 kb on + strand, within GFF3689at 189.013 kb on - strand, within GFF3689at 189.013 kb on - strand, within GFF3689at 189.057 kb on + strandat 189.057 kb on + strandat 189.057 kb on + strandat 189.057 kb on + strandat 189.057 kb on + strandat 189.057 kb on + strandat 189.058 kb on - strandat 189.058 kb on - strandat 189.269 kb on + strandat 189.269 kb on + strandat 189.269 kb on + strandat 189.269 kb on + strandat 189.755 kb on + strand, within GFF3690at 189.755 kb on + strand, within GFF3690at 189.755 kb on + strand, within GFF3690at 189.755 kb on + strand, within GFF3690at 189.755 kb on + strand, within GFF3690at 189.755 kb on + strand, within GFF3690at 189.755 kb on + strand, within GFF3690at 189.756 kb on - strand, within GFF3690at 189.756 kb on - strand, within GFF3690at 189.756 kb on - strand, within GFF3690at 189.756 kb on - strand, within GFF3690at 189.756 kb on - strand, within GFF3690at 189.756 kb on - strand, within GFF3690at 190.174 kb on + strand, within GFF3690at 190.174 kb on + strand, within GFF3690at 190.175 kb on - strand, within GFF3690at 190.175 kb on - strand, within GFF3690at 190.175 kb on - strand, within GFF3690at 190.175 kb on - strand, within GFF3690at 190.175 kb on - strand, within GFF3690at 190.178 kb on + strand, within GFF3690at 190.179 kb on - strand, within GFF3690at 190.179 kb on - strand, within GFF3690at 190.179 kb on - strand, within GFF3690at 190.262 kb on + strand, within GFF3690at 190.263 kb on - strand, within GFF3690at 190.326 kb on - strand, within GFF3690at 190.326 kb on - strand, within GFF3690at 190.484 kb on + strand, within GFF3690at 190.484 kb on + strand, within GFF3690at 190.484 kb on + strand, within GFF3690at 190.484 kb on + strand, within GFF3690at 190.484 kb on + strand, within GFF3690at 190.484 kb on + strand, within GFF3690at 190.485 kb on - strand, within GFF3690at 191.146 kb on - strand, within GFF3691at 191.146 kb on - strand, within GFF3691at 191.146 kb on - strand, within GFF3691at 191.196 kb on + strand, within GFF3691at 191.196 kb on + strand, within GFF3691at 191.196 kb on + strand, within GFF3691at 191.197 kb on - strand, within GFF3691at 191.197 kb on - strand, within GFF3691at 191.197 kb on - strand, within GFF3691at 191.197 kb on - strand, within GFF3691at 191.208 kb on + strand, within GFF3691at 191.208 kb on + strand, within GFF3691at 191.209 kb on - strand, within GFF3691at 191.209 kb on - strand, within GFF3691at 191.211 kb on + strand, within GFF3691at 191.211 kb on + strand, within GFF3691at 191.211 kb on + strand, within GFF3691at 191.211 kb on + strand, within GFF3691at 191.212 kb on - strand, within GFF3691at 191.212 kb on - strand, within GFF3691at 191.281 kb on + strand, within GFF3691at 191.281 kb on + strand, within GFF3691at 191.282 kb on - strand, within GFF3691at 191.282 kb on - strand, within GFF3691at 191.299 kb on - strand, within GFF3691at 191.307 kb on + strand, within GFF3691at 191.308 kb on - strand, within GFF3691at 191.347 kb on - strand, within GFF3691at 191.385 kb on + strand, within GFF3691at 191.385 kb on + strand, within GFF3691at 191.385 kb on + strand, within GFF3691at 191.385 kb on + strand, within GFF3691at 191.385 kb on + strand, within GFF3691at 191.385 kb on + strand, within GFF3691at 191.386 kb on - strand, within GFF3691at 191.386 kb on - strand, within GFF3691at 191.427 kb on + strand, within GFF3691at 191.427 kb on + strand, within GFF3691at 191.427 kb on + strand, within GFF3691at 191.427 kb on + strand, within GFF3691at 191.428 kb on - strand, within GFF3691at 191.428 kb on - strand, within GFF3691at 191.428 kb on - strand, within GFF3691at 191.616 kb on + strandat 191.616 kb on + strandat 191.616 kb on + strandat 191.617 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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188,311 + GFF3689 0.31 -0.4
188,312 - GFF3689 0.31 +1.3
188,312 - GFF3689 0.31 -0.2
188,312 - GFF3689 0.31 +0.5
188,464 - GFF3689 0.43 -2.1
188,464 - GFF3689 0.43 +0.5
188,479 - GFF3689 0.44 -2.6
188,479 - GFF3689 0.44 -0.6
188,622 + GFF3689 0.56 +0.1
188,622 + GFF3689 0.56 -0.8
188,623 - GFF3689 0.56 -0.1
189,012 + GFF3689 0.89 -0.6
189,012 + GFF3689 0.89 +0.7
189,012 + GFF3689 0.89 +0.4
189,013 - GFF3689 0.89 +1.1
189,013 - GFF3689 0.89 -0.4
189,057 + +1.3
189,057 + -0.2
189,057 + -0.3
189,057 + -0.2
189,057 + -0.5
189,057 + -0.2
189,058 - +0.1
189,058 - -1.1
189,269 + -0.2
189,269 + -0.1
189,269 + -1.5
189,269 + +0.0
189,755 + GFF3690 0.40 -0.6
189,755 + GFF3690 0.40 -2.3
189,755 + GFF3690 0.40 -0.6
189,755 + GFF3690 0.40 -0.9
189,755 + GFF3690 0.40 -0.3
189,755 + GFF3690 0.40 +0.2
189,755 + GFF3690 0.40 -0.9
189,756 - GFF3690 0.40 -0.1
189,756 - GFF3690 0.40 -1.6
189,756 - GFF3690 0.40 -0.6
189,756 - GFF3690 0.40 +0.0
189,756 - GFF3690 0.40 +0.9
189,756 - GFF3690 0.40 +1.4
190,174 + GFF3690 0.67 -0.6
190,174 + GFF3690 0.67 +0.1
190,175 - GFF3690 0.67 -0.1
190,175 - GFF3690 0.67 -0.8
190,175 - GFF3690 0.67 -0.4
190,175 - GFF3690 0.67 -0.1
190,175 - GFF3690 0.67 -1.1
190,178 + GFF3690 0.67 -1.3
190,179 - GFF3690 0.67 +0.3
190,179 - GFF3690 0.67 +0.7
190,179 - GFF3690 0.67 +0.7
190,262 + GFF3690 0.72 +0.2
190,263 - GFF3690 0.72 -0.5
190,326 - GFF3690 0.76 -2.4
190,326 - GFF3690 0.76 -0.2
190,484 + GFF3690 0.87 +0.3
190,484 + GFF3690 0.87 -2.1
190,484 + GFF3690 0.87 -0.3
190,484 + GFF3690 0.87 -0.5
190,484 + GFF3690 0.87 +0.7
190,484 + GFF3690 0.87 -0.1
190,485 - GFF3690 0.87 -1.5
191,146 - GFF3691 0.48 -0.5
191,146 - GFF3691 0.48 -0.1
191,146 - GFF3691 0.48 -0.1
191,196 + GFF3691 0.53 -1.5
191,196 + GFF3691 0.53 -0.3
191,196 + GFF3691 0.53 -2.0
191,197 - GFF3691 0.53 -1.3
191,197 - GFF3691 0.53 -0.4
191,197 - GFF3691 0.53 -1.2
191,197 - GFF3691 0.53 +1.0
191,208 + GFF3691 0.54 -1.5
191,208 + GFF3691 0.54 -0.5
191,209 - GFF3691 0.54 +1.7
191,209 - GFF3691 0.54 -0.6
191,211 + GFF3691 0.54 +0.3
191,211 + GFF3691 0.54 -1.2
191,211 + GFF3691 0.54 -0.6
191,211 + GFF3691 0.54 -0.7
191,212 - GFF3691 0.54 -0.7
191,212 - GFF3691 0.54 -1.3
191,281 + GFF3691 0.61 -0.6
191,281 + GFF3691 0.61 +0.5
191,282 - GFF3691 0.61 +0.0
191,282 - GFF3691 0.61 -1.6
191,299 - GFF3691 0.63 -2.8
191,307 + GFF3691 0.63 -0.0
191,308 - GFF3691 0.64 -0.5
191,347 - GFF3691 0.67 -0.4
191,385 + GFF3691 0.71 +0.2
191,385 + GFF3691 0.71 +0.2
191,385 + GFF3691 0.71 -1.0
191,385 + GFF3691 0.71 -1.1
191,385 + GFF3691 0.71 +1.7
191,385 + GFF3691 0.71 -0.5
191,386 - GFF3691 0.71 -0.6
191,386 - GFF3691 0.71 +1.1
191,427 + GFF3691 0.75 -0.3
191,427 + GFF3691 0.75 -0.7
191,427 + GFF3691 0.75 +0.2
191,427 + GFF3691 0.75 +0.9
191,428 - GFF3691 0.75 +0.4
191,428 - GFF3691 0.75 -0.3
191,428 - GFF3691 0.75 -0.6
191,616 + -1.1
191,616 + +0.7
191,616 + -0.2
191,617 - -0.7

Or see this region's nucleotide sequence