Strain Fitness in Variovorax sp. SCN45 around GFF3583

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3582 and GFF3583 are separated by 107 nucleotidesGFF3583 and GFF3584 are separated by 40 nucleotidesGFF3584 and GFF3585 overlap by 23 nucleotides GFF3582 - Tripartite tricarboxylate transporter TctC family, at 93,137 to 94,147 GFF3582 GFF3583 - AMP nucleosidase (EC 3.2.2.4), at 94,255 to 95,772 GFF3583 GFF3584 - hypothetical protein, at 95,813 to 96,334 GFF3584 GFF3585 - Sulfate transport system permease protein CysT, at 96,312 to 97,133 GFF3585 Position (kb) 94 95 96Strain fitness (log2 ratio) -2 -1 0 1 2at 93.552 kb on + strand, within GFF3582at 93.600 kb on + strand, within GFF3582at 93.600 kb on + strand, within GFF3582at 93.600 kb on + strand, within GFF3582at 93.600 kb on + strand, within GFF3582at 93.600 kb on + strand, within GFF3582at 93.600 kb on + strand, within GFF3582at 93.600 kb on + strand, within GFF3582at 93.600 kb on + strand, within GFF3582at 93.600 kb on + strand, within GFF3582at 93.600 kb on + strand, within GFF3582at 93.601 kb on - strand, within GFF3582at 93.601 kb on - strand, within GFF3582at 93.601 kb on - strand, within GFF3582at 93.601 kb on - strand, within GFF3582at 93.601 kb on - strand, within GFF3582at 93.601 kb on - strand, within GFF3582at 93.643 kb on + strand, within GFF3582at 93.644 kb on - strand, within GFF3582at 93.846 kb on + strand, within GFF3582at 93.846 kb on + strand, within GFF3582at 93.846 kb on + strand, within GFF3582at 93.846 kb on + strand, within GFF3582at 93.846 kb on + strand, within GFF3582at 93.846 kb on + strand, within GFF3582at 93.847 kb on - strand, within GFF3582at 93.847 kb on - strand, within GFF3582at 93.847 kb on - strand, within GFF3582at 93.847 kb on - strand, within GFF3582at 93.847 kb on - strand, within GFF3582at 93.858 kb on + strand, within GFF3582at 93.859 kb on - strand, within GFF3582at 93.903 kb on + strand, within GFF3582at 93.903 kb on + strand, within GFF3582at 94.126 kb on + strandat 94.127 kb on - strandat 94.256 kb on + strandat 94.256 kb on + strandat 94.257 kb on - strandat 94.379 kb on + strandat 94.705 kb on + strand, within GFF3583at 94.745 kb on + strand, within GFF3583at 94.745 kb on + strand, within GFF3583at 94.746 kb on - strand, within GFF3583at 94.746 kb on - strand, within GFF3583at 94.763 kb on + strand, within GFF3583at 94.763 kb on + strand, within GFF3583at 94.763 kb on + strand, within GFF3583at 94.763 kb on + strand, within GFF3583at 94.763 kb on + strand, within GFF3583at 94.764 kb on - strand, within GFF3583at 94.764 kb on - strand, within GFF3583at 94.928 kb on + strand, within GFF3583at 94.929 kb on - strand, within GFF3583at 95.063 kb on + strand, within GFF3583at 95.063 kb on + strand, within GFF3583at 95.063 kb on + strand, within GFF3583at 95.064 kb on - strand, within GFF3583at 95.064 kb on - strand, within GFF3583at 95.064 kb on - strand, within GFF3583at 95.064 kb on - strand, within GFF3583at 95.120 kb on + strand, within GFF3583at 95.121 kb on - strand, within GFF3583at 95.121 kb on - strand, within GFF3583at 95.121 kb on - strand, within GFF3583at 95.129 kb on + strand, within GFF3583at 95.130 kb on - strand, within GFF3583at 95.181 kb on - strand, within GFF3583at 95.205 kb on - strand, within GFF3583at 95.471 kb on + strand, within GFF3583at 95.471 kb on + strand, within GFF3583at 95.471 kb on + strand, within GFF3583at 95.472 kb on - strand, within GFF3583at 95.474 kb on + strand, within GFF3583at 95.475 kb on - strand, within GFF3583at 95.514 kb on - strand, within GFF3583at 95.609 kb on + strand, within GFF3583at 95.693 kb on + strandat 95.693 kb on + strandat 95.694 kb on - strandat 95.694 kb on - strandat 95.694 kb on - strandat 95.694 kb on - strandat 95.694 kb on - strandat 95.694 kb on - strandat 95.765 kb on + strandat 95.765 kb on + strandat 95.765 kb on + strandat 95.765 kb on + strandat 95.765 kb on + strandat 95.765 kb on + strandat 95.765 kb on + strandat 95.765 kb on + strandat 95.765 kb on + strandat 95.765 kb on + strandat 95.766 kb on - strandat 95.766 kb on - strandat 95.815 kb on - strandat 95.815 kb on - strandat 96.204 kb on + strand, within GFF3584at 96.205 kb on - strand, within GFF3584at 96.354 kb on - strandat 96.514 kb on + strand, within GFF3585at 96.514 kb on + strand, within GFF3585at 96.514 kb on + strand, within GFF3585at 96.515 kb on - strand, within GFF3585at 96.515 kb on - strand, within GFF3585at 96.515 kb on - strand, within GFF3585at 96.515 kb on - strand, within GFF3585at 96.700 kb on + strand, within GFF3585at 96.700 kb on + strand, within GFF3585at 96.701 kb on - strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.709 kb on + strand, within GFF3585at 96.710 kb on - strand, within GFF3585at 96.710 kb on - strand, within GFF3585at 96.736 kb on + strand, within GFF3585at 96.736 kb on + strand, within GFF3585at 96.736 kb on + strand, within GFF3585at 96.737 kb on - strand, within GFF3585at 96.737 kb on - strand, within GFF3585at 96.737 kb on - strand, within GFF3585at 96.737 kb on - strand, within GFF3585

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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93,552 + GFF3582 0.41 -2.0
93,600 + GFF3582 0.46 -0.7
93,600 + GFF3582 0.46 +1.3
93,600 + GFF3582 0.46 -0.4
93,600 + GFF3582 0.46 +0.2
93,600 + GFF3582 0.46 -0.8
93,600 + GFF3582 0.46 +0.1
93,600 + GFF3582 0.46 +0.1
93,600 + GFF3582 0.46 +0.1
93,600 + GFF3582 0.46 -0.6
93,600 + GFF3582 0.46 -0.8
93,601 - GFF3582 0.46 -0.4
93,601 - GFF3582 0.46 -0.2
93,601 - GFF3582 0.46 -0.6
93,601 - GFF3582 0.46 -2.1
93,601 - GFF3582 0.46 -0.2
93,601 - GFF3582 0.46 +0.9
93,643 + GFF3582 0.50 -1.2
93,644 - GFF3582 0.50 -0.5
93,846 + GFF3582 0.70 -0.4
93,846 + GFF3582 0.70 -1.9
93,846 + GFF3582 0.70 +0.3
93,846 + GFF3582 0.70 +0.5
93,846 + GFF3582 0.70 -0.5
93,846 + GFF3582 0.70 -0.1
93,847 - GFF3582 0.70 -0.7
93,847 - GFF3582 0.70 -1.0
93,847 - GFF3582 0.70 -2.0
93,847 - GFF3582 0.70 +0.1
93,847 - GFF3582 0.70 -0.4
93,858 + GFF3582 0.71 -1.3
93,859 - GFF3582 0.71 -0.5
93,903 + GFF3582 0.76 +0.1
93,903 + GFF3582 0.76 -0.9
94,126 + -0.0
94,127 - -0.2
94,256 + -0.9
94,256 + -0.2
94,257 - -0.3
94,379 + -0.4
94,705 + GFF3583 0.30 -0.3
94,745 + GFF3583 0.32 +2.1
94,745 + GFF3583 0.32 -0.8
94,746 - GFF3583 0.32 -0.6
94,746 - GFF3583 0.32 -1.5
94,763 + GFF3583 0.33 -0.9
94,763 + GFF3583 0.33 -0.3
94,763 + GFF3583 0.33 -0.5
94,763 + GFF3583 0.33 +1.7
94,763 + GFF3583 0.33 +0.4
94,764 - GFF3583 0.34 +0.8
94,764 - GFF3583 0.34 -0.3
94,928 + GFF3583 0.44 -0.7
94,929 - GFF3583 0.44 +1.1
95,063 + GFF3583 0.53 +0.4
95,063 + GFF3583 0.53 +0.6
95,063 + GFF3583 0.53 -0.0
95,064 - GFF3583 0.53 +0.2
95,064 - GFF3583 0.53 +0.2
95,064 - GFF3583 0.53 -0.5
95,064 - GFF3583 0.53 -0.6
95,120 + GFF3583 0.57 -1.8
95,121 - GFF3583 0.57 -0.2
95,121 - GFF3583 0.57 +0.0
95,121 - GFF3583 0.57 -1.7
95,129 + GFF3583 0.58 +0.1
95,130 - GFF3583 0.58 -1.8
95,181 - GFF3583 0.61 -0.4
95,205 - GFF3583 0.63 +0.6
95,471 + GFF3583 0.80 -0.1
95,471 + GFF3583 0.80 -0.4
95,471 + GFF3583 0.80 +2.0
95,472 - GFF3583 0.80 -0.6
95,474 + GFF3583 0.80 -0.3
95,475 - GFF3583 0.80 -0.4
95,514 - GFF3583 0.83 +1.7
95,609 + GFF3583 0.89 -0.3
95,693 + -1.3
95,693 + -0.6
95,694 - +1.1
95,694 - +0.1
95,694 - +0.3
95,694 - -0.8
95,694 - +1.1
95,694 - +0.7
95,765 + -1.4
95,765 + -1.5
95,765 + +0.9
95,765 + +0.9
95,765 + -0.0
95,765 + -0.1
95,765 + -0.5
95,765 + -1.0
95,765 + +0.3
95,765 + +0.6
95,766 - -0.6
95,766 - -1.4
95,815 - -0.3
95,815 - +1.0
96,204 + GFF3584 0.75 -0.7
96,205 - GFF3584 0.75 -1.3
96,354 - -0.6
96,514 + GFF3585 0.25 -0.7
96,514 + GFF3585 0.25 -0.1
96,514 + GFF3585 0.25 -0.3
96,515 - GFF3585 0.25 -0.5
96,515 - GFF3585 0.25 -0.6
96,515 - GFF3585 0.25 -0.2
96,515 - GFF3585 0.25 -1.4
96,700 + GFF3585 0.47 -0.4
96,700 + GFF3585 0.47 -0.4
96,701 - GFF3585 0.47 -1.9
96,703 + GFF3585 0.48 +0.4
96,703 + GFF3585 0.48 +0.3
96,703 + GFF3585 0.48 -0.2
96,703 + GFF3585 0.48 -0.3
96,703 + GFF3585 0.48 +0.1
96,703 + GFF3585 0.48 +0.2
96,703 + GFF3585 0.48 +0.2
96,703 + GFF3585 0.48 -1.6
96,704 - GFF3585 0.48 +0.5
96,704 - GFF3585 0.48 -1.4
96,704 - GFF3585 0.48 +0.3
96,704 - GFF3585 0.48 -1.3
96,704 - GFF3585 0.48 -0.6
96,704 - GFF3585 0.48 +0.1
96,704 - GFF3585 0.48 -0.3
96,704 - GFF3585 0.48 -0.3
96,704 - GFF3585 0.48 -0.0
96,704 - GFF3585 0.48 +0.1
96,709 + GFF3585 0.48 +0.5
96,710 - GFF3585 0.48 -0.2
96,710 - GFF3585 0.48 +0.3
96,736 + GFF3585 0.52 +0.8
96,736 + GFF3585 0.52 -0.6
96,736 + GFF3585 0.52 -0.8
96,737 - GFF3585 0.52 -0.0
96,737 - GFF3585 0.52 -0.1
96,737 - GFF3585 0.52 +0.5
96,737 - GFF3585 0.52 -0.2

Or see this region's nucleotide sequence