Strain Fitness in Variovorax sp. SCN45 around GFF2876

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2874 and GFF2875 are separated by 182 nucleotidesGFF2875 and GFF2876 are separated by 55 nucleotidesGFF2876 and GFF2877 are separated by 409 nucleotides GFF2874 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 297,266 to 298,192 GFF2874 GFF2875 - Granule-associated protein, at 298,375 to 298,926 GFF2875 GFF2876 - no description, at 298,982 to 299,353 GFF2876 GFF2877 - Ribonuclease BN, at 299,763 to 300,710 GFF2877 Position (kb) 298 299 300Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 298.179 kb on + strandat 298.179 kb on + strandat 298.179 kb on + strandat 298.179 kb on + strandat 298.179 kb on + strandat 298.180 kb on - strandat 298.180 kb on - strandat 298.180 kb on - strandat 298.180 kb on - strandat 298.180 kb on - strandat 298.180 kb on - strandat 298.180 kb on - strandat 298.180 kb on - strandat 298.222 kb on + strandat 298.223 kb on - strandat 298.236 kb on + strandat 298.237 kb on - strandat 298.286 kb on + strandat 298.286 kb on + strandat 298.286 kb on + strandat 298.286 kb on + strandat 298.287 kb on - strandat 298.287 kb on - strandat 298.287 kb on - strandat 298.287 kb on - strandat 298.287 kb on - strandat 298.287 kb on - strandat 298.287 kb on - strandat 298.287 kb on - strandat 298.287 kb on - strandat 298.288 kb on + strandat 298.288 kb on + strandat 298.288 kb on + strandat 298.288 kb on + strandat 298.288 kb on + strandat 298.288 kb on + strandat 298.289 kb on - strandat 298.289 kb on - strandat 298.289 kb on - strandat 298.289 kb on - strandat 298.289 kb on - strandat 298.289 kb on - strandat 298.289 kb on - strandat 298.289 kb on - strandat 298.315 kb on + strandat 298.315 kb on + strandat 298.316 kb on - strandat 298.582 kb on - strand, within GFF2875at 298.618 kb on + strand, within GFF2875at 298.618 kb on + strand, within GFF2875at 298.618 kb on + strand, within GFF2875at 298.618 kb on + strand, within GFF2875at 298.618 kb on + strand, within GFF2875at 298.619 kb on - strand, within GFF2875at 298.619 kb on - strand, within GFF2875at 298.619 kb on - strand, within GFF2875at 298.633 kb on + strand, within GFF2875at 298.633 kb on + strand, within GFF2875at 298.633 kb on + strand, within GFF2875at 298.633 kb on + strand, within GFF2875at 298.633 kb on + strand, within GFF2875at 298.633 kb on + strand, within GFF2875at 298.633 kb on + strand, within GFF2875at 298.633 kb on + strand, within GFF2875at 298.633 kb on + strand, within GFF2875at 298.633 kb on + strand, within GFF2875at 298.633 kb on + strand, within GFF2875at 298.633 kb on + strand, within GFF2875at 298.634 kb on - strand, within GFF2875at 298.634 kb on - strand, within GFF2875at 298.634 kb on - strand, within GFF2875at 298.634 kb on - strand, within GFF2875at 298.634 kb on - strand, within GFF2875at 298.634 kb on - strand, within GFF2875at 298.634 kb on - strand, within GFF2875at 298.634 kb on - strand, within GFF2875at 298.634 kb on - strand, within GFF2875at 298.634 kb on - strand, within GFF2875at 298.634 kb on - strand, within GFF2875at 298.634 kb on - strand, within GFF2875at 298.634 kb on - strand, within GFF2875at 298.634 kb on - strand, within GFF2875at 298.634 kb on - strand, within GFF2875at 298.924 kb on + strandat 298.925 kb on - strandat 298.925 kb on - strandat 299.056 kb on + strand, within GFF2876at 299.056 kb on + strand, within GFF2876at 299.056 kb on + strand, within GFF2876at 299.056 kb on + strand, within GFF2876at 299.056 kb on + strand, within GFF2876at 299.057 kb on - strand, within GFF2876at 299.080 kb on + strand, within GFF2876at 299.080 kb on + strand, within GFF2876at 299.081 kb on - strand, within GFF2876at 299.501 kb on + strandat 299.501 kb on + strandat 299.501 kb on + strandat 299.502 kb on - strandat 299.528 kb on + strandat 299.528 kb on + strandat 299.528 kb on + strandat 299.528 kb on + strandat 299.528 kb on + strandat 299.528 kb on + strandat 299.529 kb on - strandat 299.723 kb on + strandat 299.723 kb on + strandat 299.723 kb on + strandat 299.723 kb on + strandat 299.724 kb on - strandat 299.724 kb on - strandat 299.724 kb on - strandat 299.724 kb on - strandat 299.724 kb on - strandat 299.846 kb on + strandat 299.863 kb on + strand, within GFF2877at 299.864 kb on - strand, within GFF2877at 299.864 kb on - strand, within GFF2877at 299.953 kb on + strand, within GFF2877at 299.953 kb on + strand, within GFF2877at 299.953 kb on + strand, within GFF2877at 299.953 kb on + strand, within GFF2877at 299.954 kb on - strand, within GFF2877at 299.954 kb on - strand, within GFF2877at 299.954 kb on - strand, within GFF2877at 299.954 kb on - strand, within GFF2877at 299.986 kb on + strand, within GFF2877at 299.986 kb on + strand, within GFF2877at 299.986 kb on + strand, within GFF2877at 299.986 kb on + strand, within GFF2877at 299.986 kb on + strand, within GFF2877at 299.986 kb on + strand, within GFF2877at 299.987 kb on - strand, within GFF2877at 300.088 kb on + strand, within GFF2877at 300.088 kb on + strand, within GFF2877at 300.088 kb on + strand, within GFF2877at 300.088 kb on + strand, within GFF2877at 300.089 kb on - strand, within GFF2877at 300.089 kb on - strand, within GFF2877at 300.089 kb on - strand, within GFF2877at 300.133 kb on + strand, within GFF2877at 300.133 kb on + strand, within GFF2877at 300.133 kb on + strand, within GFF2877at 300.133 kb on + strand, within GFF2877at 300.134 kb on - strand, within GFF2877at 300.134 kb on - strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.273 kb on - strand, within GFF2877

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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298,179 + -1.0
298,179 + -0.1
298,179 + -0.3
298,179 + -1.3
298,179 + +0.9
298,180 - -0.3
298,180 - -2.0
298,180 - -0.2
298,180 - -1.8
298,180 - -0.9
298,180 - +0.5
298,180 - +0.9
298,180 - +0.3
298,222 + +0.0
298,223 - -0.2
298,236 + -0.4
298,237 - +1.1
298,286 + -0.5
298,286 + +1.5
298,286 + +2.1
298,286 + -0.5
298,287 - -0.5
298,287 - -2.7
298,287 - -1.3
298,287 - -0.4
298,287 - -0.6
298,287 - -0.3
298,287 - -0.3
298,287 - +0.2
298,287 - -1.4
298,288 + -0.9
298,288 + -3.1
298,288 + -0.7
298,288 + -0.7
298,288 + -0.0
298,288 + -1.7
298,289 - -0.8
298,289 - -1.1
298,289 - +0.2
298,289 - +1.5
298,289 - +0.6
298,289 - -0.5
298,289 - +1.7
298,289 - -1.1
298,315 + -0.3
298,315 + -0.4
298,316 - -0.2
298,582 - GFF2875 0.38 +0.2
298,618 + GFF2875 0.44 +0.6
298,618 + GFF2875 0.44 -0.5
298,618 + GFF2875 0.44 -1.5
298,618 + GFF2875 0.44 -0.7
298,618 + GFF2875 0.44 -0.3
298,619 - GFF2875 0.44 -0.1
298,619 - GFF2875 0.44 +1.1
298,619 - GFF2875 0.44 -2.2
298,633 + GFF2875 0.47 -0.8
298,633 + GFF2875 0.47 -1.0
298,633 + GFF2875 0.47 +0.1
298,633 + GFF2875 0.47 -0.6
298,633 + GFF2875 0.47 -1.1
298,633 + GFF2875 0.47 -0.2
298,633 + GFF2875 0.47 -2.1
298,633 + GFF2875 0.47 -0.8
298,633 + GFF2875 0.47 -0.4
298,633 + GFF2875 0.47 -1.5
298,633 + GFF2875 0.47 -1.0
298,633 + GFF2875 0.47 -1.3
298,634 - GFF2875 0.47 -0.6
298,634 - GFF2875 0.47 -1.2
298,634 - GFF2875 0.47 -0.2
298,634 - GFF2875 0.47 -0.2
298,634 - GFF2875 0.47 +3.1
298,634 - GFF2875 0.47 -0.3
298,634 - GFF2875 0.47 +2.1
298,634 - GFF2875 0.47 -0.2
298,634 - GFF2875 0.47 -0.8
298,634 - GFF2875 0.47 -0.1
298,634 - GFF2875 0.47 +1.5
298,634 - GFF2875 0.47 -0.1
298,634 - GFF2875 0.47 +1.1
298,634 - GFF2875 0.47 -1.9
298,634 - GFF2875 0.47 -1.8
298,924 + -1.2
298,925 - -0.6
298,925 - +0.5
299,056 + GFF2876 0.20 +1.0
299,056 + GFF2876 0.20 +0.0
299,056 + GFF2876 0.20 +1.4
299,056 + GFF2876 0.20 -0.2
299,056 + GFF2876 0.20 +0.4
299,057 - GFF2876 0.20 +0.5
299,080 + GFF2876 0.26 +0.4
299,080 + GFF2876 0.26 -0.4
299,081 - GFF2876 0.27 -0.6
299,501 + -1.8
299,501 + -1.5
299,501 + -1.7
299,502 - +0.5
299,528 + -0.1
299,528 + -0.1
299,528 + -0.5
299,528 + -0.8
299,528 + -0.2
299,528 + -0.2
299,529 - -0.1
299,723 + -0.7
299,723 + +0.7
299,723 + -0.4
299,723 + +0.6
299,724 - -0.8
299,724 - -0.1
299,724 - -1.0
299,724 - -0.3
299,724 - -0.3
299,846 + -0.9
299,863 + GFF2877 0.11 -0.3
299,864 - GFF2877 0.11 +0.2
299,864 - GFF2877 0.11 -0.4
299,953 + GFF2877 0.20 -0.5
299,953 + GFF2877 0.20 -2.4
299,953 + GFF2877 0.20 -0.5
299,953 + GFF2877 0.20 -0.8
299,954 - GFF2877 0.20 -1.6
299,954 - GFF2877 0.20 +0.1
299,954 - GFF2877 0.20 -0.7
299,954 - GFF2877 0.20 -0.1
299,986 + GFF2877 0.24 -0.5
299,986 + GFF2877 0.24 -0.6
299,986 + GFF2877 0.24 +0.2
299,986 + GFF2877 0.24 -0.1
299,986 + GFF2877 0.24 -0.1
299,986 + GFF2877 0.24 -0.7
299,987 - GFF2877 0.24 +0.1
300,088 + GFF2877 0.34 -0.2
300,088 + GFF2877 0.34 -0.0
300,088 + GFF2877 0.34 -0.8
300,088 + GFF2877 0.34 -0.2
300,089 - GFF2877 0.34 +0.8
300,089 - GFF2877 0.34 -1.0
300,089 - GFF2877 0.34 -1.0
300,133 + GFF2877 0.39 -0.9
300,133 + GFF2877 0.39 -0.1
300,133 + GFF2877 0.39 -0.7
300,133 + GFF2877 0.39 -0.3
300,134 - GFF2877 0.39 +0.1
300,134 - GFF2877 0.39 +0.8
300,265 + GFF2877 0.53 -0.2
300,265 + GFF2877 0.53 -1.7
300,265 + GFF2877 0.53 -0.5
300,265 + GFF2877 0.53 +0.6
300,265 + GFF2877 0.53 +0.6
300,265 + GFF2877 0.53 -0.8
300,265 + GFF2877 0.53 -2.4
300,265 + GFF2877 0.53 -0.8
300,265 + GFF2877 0.53 -0.5
300,265 + GFF2877 0.53 -0.4
300,265 + GFF2877 0.53 +0.4
300,265 + GFF2877 0.53 -0.8
300,265 + GFF2877 0.53 -2.1
300,265 + GFF2877 0.53 +0.5
300,265 + GFF2877 0.53 +0.4
300,265 + GFF2877 0.53 -0.9
300,265 + GFF2877 0.53 -0.8
300,265 + GFF2877 0.53 -0.4
300,265 + GFF2877 0.53 -0.6
300,265 + GFF2877 0.53 -0.4
300,265 + GFF2877 0.53 -0.1
300,265 + GFF2877 0.53 -1.1
300,266 - GFF2877 0.53 +0.2
300,266 - GFF2877 0.53 -2.4
300,266 - GFF2877 0.53 +0.5
300,266 - GFF2877 0.53 -0.2
300,266 - GFF2877 0.53 +0.3
300,266 - GFF2877 0.53 -2.0
300,266 - GFF2877 0.53 +0.1
300,266 - GFF2877 0.53 -0.6
300,266 - GFF2877 0.53 -0.7
300,266 - GFF2877 0.53 +0.9
300,266 - GFF2877 0.53 +0.5
300,266 - GFF2877 0.53 -0.5
300,266 - GFF2877 0.53 +0.2
300,266 - GFF2877 0.53 -1.1
300,266 - GFF2877 0.53 -1.1
300,266 - GFF2877 0.53 +0.8
300,266 - GFF2877 0.53 +0.0
300,266 - GFF2877 0.53 -0.9
300,266 - GFF2877 0.53 -0.7
300,266 - GFF2877 0.53 +0.4
300,271 + GFF2877 0.54 -0.6
300,271 + GFF2877 0.54 +0.1
300,271 + GFF2877 0.54 +0.5
300,271 + GFF2877 0.54 -0.0
300,271 + GFF2877 0.54 -0.6
300,271 + GFF2877 0.54 -1.0
300,271 + GFF2877 0.54 -0.5
300,271 + GFF2877 0.54 +0.2
300,271 + GFF2877 0.54 -1.7
300,271 + GFF2877 0.54 -0.0
300,271 + GFF2877 0.54 +0.3
300,271 + GFF2877 0.54 -0.1
300,271 + GFF2877 0.54 -0.7
300,271 + GFF2877 0.54 -0.5
300,271 + GFF2877 0.54 +1.9
300,271 + GFF2877 0.54 -0.3
300,271 + GFF2877 0.54 -2.0
300,271 + GFF2877 0.54 +0.3
300,271 + GFF2877 0.54 -1.7
300,271 + GFF2877 0.54 +0.3
300,271 + GFF2877 0.54 -1.5
300,271 + GFF2877 0.54 -0.8
300,271 + GFF2877 0.54 -0.2
300,272 - GFF2877 0.54 -0.2
300,272 - GFF2877 0.54 -1.1
300,272 - GFF2877 0.54 -1.1
300,272 - GFF2877 0.54 +0.3
300,272 - GFF2877 0.54 +0.2
300,272 - GFF2877 0.54 -0.1
300,272 - GFF2877 0.54 -0.8
300,272 - GFF2877 0.54 -1.0
300,272 - GFF2877 0.54 -3.3
300,272 - GFF2877 0.54 -0.4
300,272 - GFF2877 0.54 -0.2
300,272 - GFF2877 0.54 -1.1
300,272 - GFF2877 0.54 -0.0
300,272 - GFF2877 0.54 -0.7
300,273 - GFF2877 0.54 -1.7

Or see this region's nucleotide sequence