Strain Fitness in Variovorax sp. SCN45 around GFF2791

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2790 and GFF2791 are separated by 116 nucleotidesGFF2791 and GFF2792 are separated by 6 nucleotides GFF2790 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 219,707 to 220,891 GFF2790 GFF2791 - hypothetical protein, at 221,008 to 221,343 GFF2791 GFF2792 - Chaperone protein ClpB (ATP-dependent unfoldase), at 221,350 to 223,971 GFF2792 Position (kb) 221 222Strain fitness (log2 ratio) -1 0 1 2at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.053 kb on + strand, within GFF2790at 220.054 kb on - strand, within GFF2790at 220.383 kb on + strand, within GFF2790at 220.383 kb on + strand, within GFF2790at 220.383 kb on + strand, within GFF2790at 220.384 kb on - strand, within GFF2790at 220.384 kb on - strand, within GFF2790at 220.384 kb on - strand, within GFF2790at 220.458 kb on + strand, within GFF2790at 220.458 kb on + strand, within GFF2790at 220.458 kb on + strand, within GFF2790at 220.458 kb on + strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.495 kb on - strand, within GFF2790at 220.495 kb on - strand, within GFF2790at 220.515 kb on + strand, within GFF2790at 220.515 kb on + strand, within GFF2790at 220.515 kb on + strand, within GFF2790at 220.692 kb on + strand, within GFF2790at 220.692 kb on + strand, within GFF2790at 220.692 kb on + strand, within GFF2790at 220.693 kb on - strand, within GFF2790at 220.996 kb on + strandat 220.997 kb on - strandat 220.997 kb on - strandat 221.237 kb on + strand, within GFF2791at 221.238 kb on - strand, within GFF2791at 221.333 kb on - strandat 221.351 kb on + strandat 221.352 kb on - strandat 221.661 kb on + strand, within GFF2792at 221.661 kb on + strand, within GFF2792at 221.662 kb on - strand, within GFF2792at 221.662 kb on - strand, within GFF2792at 221.723 kb on + strand, within GFF2792at 221.723 kb on + strand, within GFF2792at 221.724 kb on - strand, within GFF2792at 221.724 kb on - strand, within GFF2792at 221.724 kb on - strand, within GFF2792at 221.724 kb on - strand, within GFF2792at 221.724 kb on - strand, within GFF2792at 221.982 kb on - strand, within GFF2792at 221.996 kb on + strand, within GFF2792at 221.997 kb on - strand, within GFF2792at 222.005 kb on + strand, within GFF2792at 222.005 kb on + strand, within GFF2792at 222.005 kb on + strand, within GFF2792

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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220,026 + GFF2790 0.27 -0.8
220,026 + GFF2790 0.27 -0.8
220,026 + GFF2790 0.27 -1.1
220,026 + GFF2790 0.27 -0.9
220,026 + GFF2790 0.27 +0.3
220,026 + GFF2790 0.27 +0.3
220,026 + GFF2790 0.27 -0.6
220,026 + GFF2790 0.27 -0.4
220,026 + GFF2790 0.27 -0.5
220,027 - GFF2790 0.27 -0.7
220,027 - GFF2790 0.27 -0.0
220,027 - GFF2790 0.27 -0.8
220,027 - GFF2790 0.27 -0.4
220,027 - GFF2790 0.27 -0.5
220,027 - GFF2790 0.27 +0.3
220,027 - GFF2790 0.27 -0.2
220,027 - GFF2790 0.27 -1.1
220,027 - GFF2790 0.27 +0.5
220,027 - GFF2790 0.27 +0.0
220,027 - GFF2790 0.27 -0.6
220,027 - GFF2790 0.27 -1.5
220,027 - GFF2790 0.27 -0.7
220,027 - GFF2790 0.27 +0.6
220,027 - GFF2790 0.27 +1.5
220,027 - GFF2790 0.27 -0.3
220,053 + GFF2790 0.29 -0.6
220,054 - GFF2790 0.29 +1.0
220,383 + GFF2790 0.57 -0.8
220,383 + GFF2790 0.57 -0.4
220,383 + GFF2790 0.57 -1.3
220,384 - GFF2790 0.57 -0.2
220,384 - GFF2790 0.57 +0.1
220,384 - GFF2790 0.57 -1.3
220,458 + GFF2790 0.63 -1.4
220,458 + GFF2790 0.63 +0.2
220,458 + GFF2790 0.63 +0.5
220,458 + GFF2790 0.63 -0.8
220,459 - GFF2790 0.63 +0.9
220,459 - GFF2790 0.63 -0.4
220,459 - GFF2790 0.63 +0.8
220,459 - GFF2790 0.63 +0.3
220,459 - GFF2790 0.63 -0.7
220,495 - GFF2790 0.66 -0.7
220,495 - GFF2790 0.66 -0.0
220,515 + GFF2790 0.68 -0.1
220,515 + GFF2790 0.68 -0.4
220,515 + GFF2790 0.68 +0.2
220,692 + GFF2790 0.83 -0.1
220,692 + GFF2790 0.83 -0.4
220,692 + GFF2790 0.83 -1.5
220,693 - GFF2790 0.83 -0.4
220,996 + +0.3
220,997 - -0.3
220,997 - +0.5
221,237 + GFF2791 0.68 -0.6
221,238 - GFF2791 0.68 -0.4
221,333 - -1.6
221,351 + +0.3
221,352 - -0.4
221,661 + GFF2792 0.12 +0.2
221,661 + GFF2792 0.12 -1.0
221,662 - GFF2792 0.12 -0.6
221,662 - GFF2792 0.12 +0.0
221,723 + GFF2792 0.14 -0.5
221,723 + GFF2792 0.14 -0.1
221,724 - GFF2792 0.14 +0.5
221,724 - GFF2792 0.14 +2.0
221,724 - GFF2792 0.14 +0.4
221,724 - GFF2792 0.14 -0.2
221,724 - GFF2792 0.14 -0.6
221,982 - GFF2792 0.24 -0.0
221,996 + GFF2792 0.25 -0.7
221,997 - GFF2792 0.25 -0.1
222,005 + GFF2792 0.25 -0.4
222,005 + GFF2792 0.25 -0.8
222,005 + GFF2792 0.25 -0.3

Or see this region's nucleotide sequence