Strain Fitness in Variovorax sp. SCN45 around GFF2736

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2735 and GFF2736 are separated by 100 nucleotidesGFF2736 and GFF2737 are separated by 166 nucleotides GFF2735 - Transcriptional regulator, LysR family, at 171,048 to 171,935 GFF2735 GFF2736 - Uncharacterized MFS-type transporter, at 172,036 to 173,247 GFF2736 GFF2737 - Uncharacterized MFS-type transporter, at 173,414 to 174,583 GFF2737 Position (kb) 172 173 174Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 171.049 kb on + strandat 171.049 kb on + strandat 171.049 kb on + strandat 171.049 kb on + strandat 171.049 kb on + strandat 171.050 kb on - strandat 171.050 kb on - strandat 171.050 kb on - strandat 171.361 kb on + strand, within GFF2735at 171.367 kb on + strand, within GFF2735at 171.430 kb on + strand, within GFF2735at 171.430 kb on + strand, within GFF2735at 171.430 kb on + strand, within GFF2735at 171.431 kb on - strand, within GFF2735at 171.431 kb on - strand, within GFF2735at 171.431 kb on - strand, within GFF2735at 171.589 kb on + strand, within GFF2735at 171.589 kb on + strand, within GFF2735at 171.590 kb on - strand, within GFF2735at 171.590 kb on - strand, within GFF2735at 171.993 kb on - strandat 172.023 kb on + strandat 172.024 kb on - strandat 172.219 kb on + strand, within GFF2736at 172.220 kb on - strand, within GFF2736at 172.220 kb on - strand, within GFF2736at 172.220 kb on - strand, within GFF2736at 172.351 kb on + strand, within GFF2736at 172.352 kb on - strand, within GFF2736at 172.735 kb on + strand, within GFF2736at 172.735 kb on + strand, within GFF2736at 172.735 kb on + strand, within GFF2736at 172.735 kb on + strand, within GFF2736at 172.735 kb on + strand, within GFF2736at 172.735 kb on + strand, within GFF2736at 172.735 kb on + strand, within GFF2736at 172.736 kb on - strand, within GFF2736at 172.736 kb on - strand, within GFF2736at 172.736 kb on - strand, within GFF2736at 172.736 kb on - strand, within GFF2736at 172.736 kb on - strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.946 kb on + strand, within GFF2736at 172.947 kb on - strand, within GFF2736at 172.948 kb on + strand, within GFF2736at 172.948 kb on + strand, within GFF2736at 172.948 kb on + strand, within GFF2736at 172.948 kb on + strand, within GFF2736at 172.948 kb on + strand, within GFF2736at 172.948 kb on + strand, within GFF2736at 172.948 kb on + strand, within GFF2736at 172.948 kb on + strand, within GFF2736at 172.948 kb on + strand, within GFF2736at 172.948 kb on + strand, within GFF2736at 172.948 kb on + strand, within GFF2736at 172.948 kb on + strand, within GFF2736at 172.948 kb on + strand, within GFF2736at 172.948 kb on + strand, within GFF2736at 172.949 kb on - strand, within GFF2736at 172.949 kb on - strand, within GFF2736at 172.949 kb on - strand, within GFF2736at 172.949 kb on - strand, within GFF2736at 172.949 kb on - strand, within GFF2736at 172.949 kb on - strand, within GFF2736at 172.949 kb on - strand, within GFF2736at 172.949 kb on - strand, within GFF2736at 172.949 kb on - strand, within GFF2736at 172.949 kb on - strand, within GFF2736at 172.949 kb on - strand, within GFF2736at 172.949 kb on - strand, within GFF2736at 172.949 kb on - strand, within GFF2736at 172.949 kb on - strand, within GFF2736at 172.978 kb on + strand, within GFF2736at 172.978 kb on + strand, within GFF2736at 172.979 kb on - strand, within GFF2736at 173.292 kb on - strandat 173.344 kb on + strandat 173.344 kb on + strandat 173.344 kb on + strandat 173.344 kb on + strandat 173.344 kb on + strandat 173.345 kb on - strandat 173.345 kb on - strandat 173.345 kb on - strandat 173.345 kb on - strandat 173.345 kb on - strandat 173.345 kb on - strandat 173.345 kb on - strandat 173.618 kb on + strand, within GFF2737at 173.618 kb on + strand, within GFF2737at 173.618 kb on + strand, within GFF2737at 173.618 kb on + strand, within GFF2737at 173.618 kb on + strand, within GFF2737at 173.618 kb on + strand, within GFF2737at 173.618 kb on + strand, within GFF2737at 173.618 kb on + strand, within GFF2737at 173.618 kb on + strand, within GFF2737at 173.618 kb on + strand, within GFF2737at 173.618 kb on + strand, within GFF2737at 173.619 kb on - strand, within GFF2737at 173.619 kb on - strand, within GFF2737at 173.619 kb on - strand, within GFF2737at 173.619 kb on - strand, within GFF2737at 173.619 kb on - strand, within GFF2737at 173.619 kb on - strand, within GFF2737at 173.619 kb on - strand, within GFF2737at 173.619 kb on - strand, within GFF2737at 173.717 kb on + strand, within GFF2737at 173.718 kb on - strand, within GFF2737at 173.718 kb on - strand, within GFF2737at 173.718 kb on - strand, within GFF2737at 173.718 kb on - strand, within GFF2737at 173.729 kb on + strand, within GFF2737at 173.729 kb on + strand, within GFF2737at 173.729 kb on + strand, within GFF2737at 173.729 kb on + strand, within GFF2737at 173.729 kb on + strand, within GFF2737at 173.729 kb on + strand, within GFF2737at 173.729 kb on + strand, within GFF2737at 173.730 kb on - strand, within GFF2737at 173.730 kb on - strand, within GFF2737at 173.730 kb on - strand, within GFF2737at 173.730 kb on - strand, within GFF2737at 173.730 kb on - strand, within GFF2737at 173.730 kb on - strand, within GFF2737at 174.030 kb on - strand, within GFF2737at 174.030 kb on - strand, within GFF2737at 174.030 kb on - strand, within GFF2737at 174.030 kb on - strand, within GFF2737at 174.030 kb on - strand, within GFF2737at 174.080 kb on + strand, within GFF2737at 174.080 kb on + strand, within GFF2737at 174.080 kb on + strand, within GFF2737at 174.080 kb on + strand, within GFF2737at 174.080 kb on + strand, within GFF2737at 174.081 kb on - strand, within GFF2737at 174.081 kb on - strand, within GFF2737at 174.120 kb on - strand, within GFF2737at 174.120 kb on - strand, within GFF2737at 174.161 kb on + strand, within GFF2737at 174.161 kb on + strand, within GFF2737at 174.161 kb on + strand, within GFF2737at 174.161 kb on + strand, within GFF2737at 174.161 kb on + strand, within GFF2737at 174.161 kb on + strand, within GFF2737at 174.161 kb on + strand, within GFF2737at 174.161 kb on + strand, within GFF2737at 174.162 kb on - strand, within GFF2737at 174.162 kb on - strand, within GFF2737at 174.162 kb on - strand, within GFF2737at 174.218 kb on + strand, within GFF2737at 174.218 kb on + strand, within GFF2737at 174.218 kb on + strand, within GFF2737at 174.218 kb on + strand, within GFF2737at 174.219 kb on - strand, within GFF2737

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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171,049 + +0.5
171,049 + +0.5
171,049 + -0.7
171,049 + -0.4
171,049 + -0.6
171,050 - -0.5
171,050 - -0.1
171,050 - -0.2
171,361 + GFF2735 0.35 -0.5
171,367 + GFF2735 0.36 -0.2
171,430 + GFF2735 0.43 +0.7
171,430 + GFF2735 0.43 -0.8
171,430 + GFF2735 0.43 -0.2
171,431 - GFF2735 0.43 -0.1
171,431 - GFF2735 0.43 -0.5
171,431 - GFF2735 0.43 -0.7
171,589 + GFF2735 0.61 -0.7
171,589 + GFF2735 0.61 -1.9
171,590 - GFF2735 0.61 -1.0
171,590 - GFF2735 0.61 -0.8
171,993 - -1.9
172,023 + -0.1
172,024 - +0.1
172,219 + GFF2736 0.15 +0.9
172,220 - GFF2736 0.15 -0.9
172,220 - GFF2736 0.15 -2.1
172,220 - GFF2736 0.15 -1.0
172,351 + GFF2736 0.26 -2.1
172,352 - GFF2736 0.26 -1.2
172,735 + GFF2736 0.58 -0.6
172,735 + GFF2736 0.58 -0.4
172,735 + GFF2736 0.58 -0.7
172,735 + GFF2736 0.58 -1.2
172,735 + GFF2736 0.58 -0.9
172,735 + GFF2736 0.58 -0.4
172,735 + GFF2736 0.58 -0.9
172,736 - GFF2736 0.58 -0.4
172,736 - GFF2736 0.58 -0.9
172,736 - GFF2736 0.58 -1.0
172,736 - GFF2736 0.58 -0.9
172,736 - GFF2736 0.58 +0.1
172,741 + GFF2736 0.58 +0.3
172,741 + GFF2736 0.58 -1.1
172,741 + GFF2736 0.58 +1.1
172,741 + GFF2736 0.58 -0.7
172,741 + GFF2736 0.58 -0.1
172,741 + GFF2736 0.58 -0.6
172,741 + GFF2736 0.58 -0.0
172,741 + GFF2736 0.58 -0.3
172,741 + GFF2736 0.58 -2.3
172,741 + GFF2736 0.58 -0.5
172,741 + GFF2736 0.58 -1.8
172,742 - GFF2736 0.58 +0.1
172,742 - GFF2736 0.58 +0.3
172,742 - GFF2736 0.58 -0.1
172,742 - GFF2736 0.58 +0.1
172,742 - GFF2736 0.58 +1.0
172,742 - GFF2736 0.58 +1.0
172,742 - GFF2736 0.58 -0.1
172,742 - GFF2736 0.58 -0.3
172,742 - GFF2736 0.58 -0.7
172,742 - GFF2736 0.58 +0.7
172,742 - GFF2736 0.58 -0.6
172,742 - GFF2736 0.58 -1.8
172,742 - GFF2736 0.58 +0.0
172,742 - GFF2736 0.58 -0.7
172,742 - GFF2736 0.58 +0.9
172,742 - GFF2736 0.58 -0.5
172,742 - GFF2736 0.58 -1.0
172,742 - GFF2736 0.58 +0.5
172,742 - GFF2736 0.58 +0.1
172,742 - GFF2736 0.58 +0.3
172,946 + GFF2736 0.75 -1.5
172,947 - GFF2736 0.75 -0.9
172,948 + GFF2736 0.75 -0.2
172,948 + GFF2736 0.75 -0.3
172,948 + GFF2736 0.75 +0.1
172,948 + GFF2736 0.75 +1.0
172,948 + GFF2736 0.75 +0.3
172,948 + GFF2736 0.75 +0.8
172,948 + GFF2736 0.75 +0.5
172,948 + GFF2736 0.75 -2.3
172,948 + GFF2736 0.75 +0.4
172,948 + GFF2736 0.75 -0.3
172,948 + GFF2736 0.75 -0.7
172,948 + GFF2736 0.75 +0.7
172,948 + GFF2736 0.75 -1.3
172,948 + GFF2736 0.75 -1.1
172,949 - GFF2736 0.75 -1.6
172,949 - GFF2736 0.75 -0.1
172,949 - GFF2736 0.75 +0.9
172,949 - GFF2736 0.75 -1.3
172,949 - GFF2736 0.75 -1.1
172,949 - GFF2736 0.75 -0.2
172,949 - GFF2736 0.75 -1.5
172,949 - GFF2736 0.75 -0.8
172,949 - GFF2736 0.75 +0.5
172,949 - GFF2736 0.75 +0.5
172,949 - GFF2736 0.75 -0.1
172,949 - GFF2736 0.75 -0.0
172,949 - GFF2736 0.75 -0.0
172,949 - GFF2736 0.75 -0.2
172,978 + GFF2736 0.78 +0.0
172,978 + GFF2736 0.78 -2.0
172,979 - GFF2736 0.78 +0.5
173,292 - +0.2
173,344 + -0.5
173,344 + -0.5
173,344 + -1.1
173,344 + +0.4
173,344 + -2.9
173,345 - -0.3
173,345 - +0.3
173,345 - -0.2
173,345 - -1.0
173,345 - -0.7
173,345 - -0.0
173,345 - -1.3
173,618 + GFF2737 0.17 -0.9
173,618 + GFF2737 0.17 +0.0
173,618 + GFF2737 0.17 -0.2
173,618 + GFF2737 0.17 -0.4
173,618 + GFF2737 0.17 +0.1
173,618 + GFF2737 0.17 +1.1
173,618 + GFF2737 0.17 -0.8
173,618 + GFF2737 0.17 -0.1
173,618 + GFF2737 0.17 +0.1
173,618 + GFF2737 0.17 +0.4
173,618 + GFF2737 0.17 -0.5
173,619 - GFF2737 0.18 -0.3
173,619 - GFF2737 0.18 +0.6
173,619 - GFF2737 0.18 -0.4
173,619 - GFF2737 0.18 -0.2
173,619 - GFF2737 0.18 -1.5
173,619 - GFF2737 0.18 -0.5
173,619 - GFF2737 0.18 +0.2
173,619 - GFF2737 0.18 -0.9
173,717 + GFF2737 0.26 -0.7
173,718 - GFF2737 0.26 -0.5
173,718 - GFF2737 0.26 -0.1
173,718 - GFF2737 0.26 +0.1
173,718 - GFF2737 0.26 +0.8
173,729 + GFF2737 0.27 -0.7
173,729 + GFF2737 0.27 -0.6
173,729 + GFF2737 0.27 -1.9
173,729 + GFF2737 0.27 +0.1
173,729 + GFF2737 0.27 -0.0
173,729 + GFF2737 0.27 +0.3
173,729 + GFF2737 0.27 +0.2
173,730 - GFF2737 0.27 -1.7
173,730 - GFF2737 0.27 -0.9
173,730 - GFF2737 0.27 -0.0
173,730 - GFF2737 0.27 +0.2
173,730 - GFF2737 0.27 +0.2
173,730 - GFF2737 0.27 +1.5
174,030 - GFF2737 0.53 -1.1
174,030 - GFF2737 0.53 +3.0
174,030 - GFF2737 0.53 -0.3
174,030 - GFF2737 0.53 -1.6
174,030 - GFF2737 0.53 -0.3
174,080 + GFF2737 0.57 -0.1
174,080 + GFF2737 0.57 +0.5
174,080 + GFF2737 0.57 -0.2
174,080 + GFF2737 0.57 -0.3
174,080 + GFF2737 0.57 -0.9
174,081 - GFF2737 0.57 -0.0
174,081 - GFF2737 0.57 -0.1
174,120 - GFF2737 0.60 +0.5
174,120 - GFF2737 0.60 -0.5
174,161 + GFF2737 0.64 -1.3
174,161 + GFF2737 0.64 -0.1
174,161 + GFF2737 0.64 -0.5
174,161 + GFF2737 0.64 +0.1
174,161 + GFF2737 0.64 -0.8
174,161 + GFF2737 0.64 +0.9
174,161 + GFF2737 0.64 -0.4
174,161 + GFF2737 0.64 -0.7
174,162 - GFF2737 0.64 +1.5
174,162 - GFF2737 0.64 -0.5
174,162 - GFF2737 0.64 -1.2
174,218 + GFF2737 0.69 +0.2
174,218 + GFF2737 0.69 -0.2
174,218 + GFF2737 0.69 -1.5
174,218 + GFF2737 0.69 -0.6
174,219 - GFF2737 0.69 -0.5

Or see this region's nucleotide sequence