Strain Fitness in Variovorax sp. SCN45 around GFF2545

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2543 and GFF2544 are separated by 131 nucleotidesGFF2544 and GFF2545 overlap by 4 nucleotidesGFF2545 and GFF2546 are separated by 13 nucleotides GFF2543 - Uncharacterized membrane protein Bcep18194_A6058, at 606,046 to 607,077 GFF2543 GFF2544 - Ubiquinone biosynthesis protein UbiJ, at 607,209 to 607,778 GFF2544 GFF2545 - Ubiquinone biosynthesis regulatory protein kinase UbiB, at 607,775 to 609,340 GFF2545 GFF2546 - sodium-solute symporter, putative, at 609,354 to 610,805 GFF2546 Position (kb) 607 608 609 610Strain fitness (log2 ratio) -2 -1 0 1 2at 606.934 kb on + strand, within GFF2543at 606.934 kb on + strand, within GFF2543at 606.934 kb on + strand, within GFF2543at 606.934 kb on + strand, within GFF2543at 606.934 kb on + strand, within GFF2543at 606.934 kb on + strand, within GFF2543at 606.934 kb on + strand, within GFF2543at 606.934 kb on + strand, within GFF2543at 606.934 kb on + strand, within GFF2543at 606.934 kb on + strand, within GFF2543at 606.935 kb on - strand, within GFF2543at 606.935 kb on - strand, within GFF2543at 606.935 kb on - strand, within GFF2543at 606.935 kb on - strand, within GFF2543at 606.935 kb on - strand, within GFF2543at 606.935 kb on - strand, within GFF2543at 606.935 kb on - strand, within GFF2543at 606.935 kb on - strand, within GFF2543at 606.935 kb on - strand, within GFF2543at 606.935 kb on - strand, within GFF2543at 606.935 kb on - strand, within GFF2543at 606.935 kb on - strand, within GFF2543at 607.075 kb on + strandat 607.075 kb on + strandat 607.075 kb on + strandat 607.075 kb on + strandat 607.075 kb on + strandat 607.076 kb on - strandat 607.076 kb on - strandat 607.076 kb on - strandat 607.076 kb on - strandat 607.076 kb on - strandat 607.076 kb on - strandat 607.076 kb on - strandat 607.076 kb on - strandat 607.076 kb on - strandat 607.076 kb on - strandat 607.080 kb on + strandat 607.080 kb on + strandat 607.081 kb on - strandat 607.081 kb on - strandat 607.081 kb on - strandat 607.081 kb on - strandat 607.081 kb on - strandat 607.081 kb on - strandat 607.081 kb on - strandat 607.081 kb on - strandat 607.081 kb on - strandat 607.188 kb on - strandat 607.199 kb on - strandat 607.208 kb on + strandat 607.208 kb on + strandat 607.208 kb on + strandat 607.208 kb on + strandat 607.208 kb on + strandat 607.208 kb on + strandat 607.208 kb on + strandat 607.208 kb on + strandat 607.208 kb on + strandat 607.208 kb on + strandat 607.209 kb on - strandat 607.209 kb on - strandat 607.209 kb on - strandat 607.787 kb on + strandat 609.291 kb on + strandat 609.338 kb on + strandat 609.338 kb on + strandat 609.339 kb on - strandat 609.339 kb on - strandat 609.339 kb on - strandat 609.378 kb on + strandat 609.378 kb on + strandat 609.378 kb on + strandat 609.378 kb on + strandat 609.378 kb on + strandat 609.378 kb on + strandat 609.379 kb on - strandat 609.379 kb on - strandat 609.379 kb on - strandat 609.379 kb on - strandat 609.379 kb on - strandat 609.408 kb on + strandat 609.408 kb on + strandat 609.408 kb on + strandat 609.408 kb on + strandat 609.409 kb on - strandat 609.409 kb on - strandat 609.409 kb on - strandat 609.409 kb on - strandat 609.409 kb on - strandat 609.409 kb on - strandat 609.633 kb on + strand, within GFF2546at 609.634 kb on - strand, within GFF2546at 609.663 kb on + strand, within GFF2546at 609.663 kb on + strand, within GFF2546at 609.663 kb on + strand, within GFF2546at 609.663 kb on + strand, within GFF2546at 609.663 kb on + strand, within GFF2546at 609.663 kb on + strand, within GFF2546at 609.663 kb on + strand, within GFF2546at 609.663 kb on + strand, within GFF2546at 609.664 kb on - strand, within GFF2546at 609.664 kb on - strand, within GFF2546at 609.664 kb on - strand, within GFF2546at 609.664 kb on - strand, within GFF2546at 609.664 kb on - strand, within GFF2546at 609.666 kb on + strand, within GFF2546at 609.666 kb on + strand, within GFF2546at 609.666 kb on + strand, within GFF2546at 609.679 kb on - strand, within GFF2546at 609.726 kb on + strand, within GFF2546at 609.726 kb on + strand, within GFF2546at 609.726 kb on + strand, within GFF2546at 609.726 kb on + strand, within GFF2546at 609.726 kb on + strand, within GFF2546at 609.726 kb on + strand, within GFF2546at 609.726 kb on + strand, within GFF2546at 609.726 kb on + strand, within GFF2546at 609.727 kb on - strand, within GFF2546at 609.727 kb on - strand, within GFF2546at 609.843 kb on + strand, within GFF2546at 609.843 kb on + strand, within GFF2546at 609.843 kb on + strand, within GFF2546at 609.843 kb on + strand, within GFF2546at 609.843 kb on + strand, within GFF2546at 609.843 kb on + strand, within GFF2546at 609.843 kb on + strand, within GFF2546at 609.844 kb on - strand, within GFF2546at 609.844 kb on - strand, within GFF2546at 609.844 kb on - strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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606,934 + GFF2543 0.86 -1.9
606,934 + GFF2543 0.86 -2.6
606,934 + GFF2543 0.86 -2.7
606,934 + GFF2543 0.86 -0.9
606,934 + GFF2543 0.86 -2.3
606,934 + GFF2543 0.86 -1.4
606,934 + GFF2543 0.86 -0.3
606,934 + GFF2543 0.86 -0.7
606,934 + GFF2543 0.86 -2.2
606,934 + GFF2543 0.86 -0.1
606,935 - GFF2543 0.86 -1.6
606,935 - GFF2543 0.86 -0.7
606,935 - GFF2543 0.86 -0.5
606,935 - GFF2543 0.86 -1.4
606,935 - GFF2543 0.86 -0.8
606,935 - GFF2543 0.86 +0.1
606,935 - GFF2543 0.86 -0.9
606,935 - GFF2543 0.86 -0.5
606,935 - GFF2543 0.86 +0.2
606,935 - GFF2543 0.86 -1.0
606,935 - GFF2543 0.86 -0.9
606,935 - GFF2543 0.86 -0.9
607,075 + -1.6
607,075 + -0.4
607,075 + -0.3
607,075 + -0.3
607,075 + -0.3
607,076 - -1.8
607,076 - -0.0
607,076 - -0.1
607,076 - +0.3
607,076 - -1.2
607,076 - +0.1
607,076 - +0.3
607,076 - -0.1
607,076 - -0.5
607,076 - -1.1
607,080 + -0.5
607,080 + +1.7
607,081 - +0.4
607,081 - +1.1
607,081 - -0.4
607,081 - -0.0
607,081 - -0.5
607,081 - -0.3
607,081 - -0.2
607,081 - +0.2
607,081 - -0.6
607,188 - +0.7
607,199 - +1.1
607,208 + -1.2
607,208 + +0.1
607,208 + -1.2
607,208 + -0.4
607,208 + -1.2
607,208 + -0.6
607,208 + -0.7
607,208 + +0.1
607,208 + -0.2
607,208 + -1.3
607,209 - +2.2
607,209 - -2.1
607,209 - -0.1
607,787 + +0.9
609,291 + +0.3
609,338 + -0.2
609,338 + -1.1
609,339 - -0.2
609,339 - -0.4
609,339 - -0.2
609,378 + -0.9
609,378 + -0.7
609,378 + -0.0
609,378 + -1.4
609,378 + -1.4
609,378 + +0.4
609,379 - -1.9
609,379 - -0.3
609,379 - -0.7
609,379 - +0.3
609,379 - -0.8
609,408 + -0.4
609,408 + +0.2
609,408 + +0.7
609,408 + +0.7
609,409 - -0.8
609,409 - -0.6
609,409 - -0.4
609,409 - +0.1
609,409 - -1.1
609,409 - -0.5
609,633 + GFF2546 0.19 -0.0
609,634 - GFF2546 0.19 +0.2
609,663 + GFF2546 0.21 +0.7
609,663 + GFF2546 0.21 -0.6
609,663 + GFF2546 0.21 -0.7
609,663 + GFF2546 0.21 +0.6
609,663 + GFF2546 0.21 -1.7
609,663 + GFF2546 0.21 +1.0
609,663 + GFF2546 0.21 -0.5
609,663 + GFF2546 0.21 -0.0
609,664 - GFF2546 0.21 -0.1
609,664 - GFF2546 0.21 +0.7
609,664 - GFF2546 0.21 -0.4
609,664 - GFF2546 0.21 +0.2
609,664 - GFF2546 0.21 -0.5
609,666 + GFF2546 0.21 +0.1
609,666 + GFF2546 0.21 -0.1
609,666 + GFF2546 0.21 -1.1
609,679 - GFF2546 0.22 -0.4
609,726 + GFF2546 0.26 -0.7
609,726 + GFF2546 0.26 +2.3
609,726 + GFF2546 0.26 +0.1
609,726 + GFF2546 0.26 -0.3
609,726 + GFF2546 0.26 +0.7
609,726 + GFF2546 0.26 +0.3
609,726 + GFF2546 0.26 -0.5
609,726 + GFF2546 0.26 +0.5
609,727 - GFF2546 0.26 -0.2
609,727 - GFF2546 0.26 -0.5
609,843 + GFF2546 0.34 -0.1
609,843 + GFF2546 0.34 -1.8
609,843 + GFF2546 0.34 -0.7
609,843 + GFF2546 0.34 +0.6
609,843 + GFF2546 0.34 -0.3
609,843 + GFF2546 0.34 -0.3
609,843 + GFF2546 0.34 +0.1
609,844 - GFF2546 0.34 -0.1
609,844 - GFF2546 0.34 -0.1
609,844 - GFF2546 0.34 +0.3
610,161 + GFF2546 0.56 -0.2
610,161 + GFF2546 0.56 -0.3
610,161 + GFF2546 0.56 -0.1
610,161 + GFF2546 0.56 -0.1
610,161 + GFF2546 0.56 -1.0
610,161 + GFF2546 0.56 -0.4
610,161 + GFF2546 0.56 -0.2
610,161 + GFF2546 0.56 +0.7
610,161 + GFF2546 0.56 -0.1
610,161 + GFF2546 0.56 -0.9
610,161 + GFF2546 0.56 -0.3
610,161 + GFF2546 0.56 -0.6
610,161 + GFF2546 0.56 -0.7
610,161 + GFF2546 0.56 +0.1
610,161 + GFF2546 0.56 -0.2
610,161 + GFF2546 0.56 +0.0
610,161 + GFF2546 0.56 -0.7
610,161 + GFF2546 0.56 +0.7
610,161 + GFF2546 0.56 -0.1
610,161 + GFF2546 0.56 +1.0
610,161 + GFF2546 0.56 -1.0
610,161 + GFF2546 0.56 +0.1
610,162 - GFF2546 0.56 -0.5
610,162 - GFF2546 0.56 +0.7
610,162 - GFF2546 0.56 -2.6
610,162 - GFF2546 0.56 -1.1
610,162 - GFF2546 0.56 +0.1
610,162 - GFF2546 0.56 -0.5
610,162 - GFF2546 0.56 -0.1
610,162 - GFF2546 0.56 -0.9
610,162 - GFF2546 0.56 -1.1
610,162 - GFF2546 0.56 +0.7
610,162 - GFF2546 0.56 +0.1
610,162 - GFF2546 0.56 +0.8
610,162 - GFF2546 0.56 +0.7
610,162 - GFF2546 0.56 -0.8
610,162 - GFF2546 0.56 -0.8
610,162 - GFF2546 0.56 +0.5
610,162 - GFF2546 0.56 -0.5
610,162 - GFF2546 0.56 +0.7
610,162 - GFF2546 0.56 -0.5
610,162 - GFF2546 0.56 +0.1
610,162 - GFF2546 0.56 -0.9

Or see this region's nucleotide sequence