Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2378 and GFF2379 are separated by 91 nucleotides GFF2379 and GFF2380 are separated by 7 nucleotides GFF2380 and GFF2381 are separated by 43 nucleotides
GFF2378 - UPF0701 protein YicC, at 432,527 to 433,450
GFF2378
GFF2379 - Serine/threonine protein kinase, at 433,542 to 434,549
GFF2379
GFF2380 - Protein phosphatase 2C-like, at 434,557 to 435,465
GFF2380
GFF2381 - Ribonuclease PH (EC 2.7.7.56), at 435,509 to 436,243
GFF2381
Position (kb) 433
434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 432.587 kb on + strand at 432.588 kb on - strand at 433.541 kb on + strand at 433.594 kb on - strand at 433.603 kb on + strand at 433.603 kb on + strand at 433.603 kb on + strand at 433.603 kb on + strand at 433.603 kb on + strand at 433.604 kb on - strand at 433.604 kb on - strand at 433.604 kb on - strand at 433.638 kb on + strand at 433.638 kb on + strand at 433.638 kb on + strand at 433.639 kb on - strand at 433.639 kb on - strand at 433.683 kb on + strand, within GFF2379 at 433.683 kb on + strand, within GFF2379 at 433.759 kb on - strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.866 kb on + strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.867 kb on - strand, within GFF2379 at 433.881 kb on + strand, within GFF2379 at 433.881 kb on + strand, within GFF2379 at 433.881 kb on + strand, within GFF2379 at 433.881 kb on + strand, within GFF2379 at 433.881 kb on + strand, within GFF2379 at 433.882 kb on - strand, within GFF2379 at 433.882 kb on - strand, within GFF2379 at 433.882 kb on - strand, within GFF2379 at 434.013 kb on + strand, within GFF2379 at 434.013 kb on + strand, within GFF2379 at 434.013 kb on + strand, within GFF2379 at 434.014 kb on - strand, within GFF2379 at 434.014 kb on - strand, within GFF2379 at 434.014 kb on - strand, within GFF2379 at 434.014 kb on - strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.142 kb on + strand, within GFF2379 at 434.143 kb on - strand, within GFF2379 at 434.143 kb on - strand, within GFF2379 at 434.143 kb on - strand, within GFF2379 at 434.143 kb on - strand, within GFF2379 at 434.172 kb on + strand, within GFF2379 at 434.172 kb on + strand, within GFF2379 at 434.172 kb on + strand, within GFF2379 at 434.173 kb on - strand, within GFF2379 at 434.173 kb on - strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.211 kb on + strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.212 kb on - strand, within GFF2379 at 434.232 kb on + strand, within GFF2379 at 434.232 kb on + strand, within GFF2379 at 434.232 kb on + strand, within GFF2379 at 434.232 kb on + strand, within GFF2379 at 434.232 kb on + strand, within GFF2379 at 434.233 kb on - strand, within GFF2379 at 434.233 kb on - strand, within GFF2379 at 434.233 kb on - strand, within GFF2379 at 434.233 kb on - strand, within GFF2379 at 434.233 kb on - strand, within GFF2379 at 434.325 kb on + strand, within GFF2379 at 434.325 kb on + strand, within GFF2379 at 434.325 kb on + strand, within GFF2379 at 434.325 kb on + strand, within GFF2379 at 434.326 kb on - strand, within GFF2379 at 434.326 kb on - strand, within GFF2379 at 434.326 kb on - strand, within GFF2379 at 434.440 kb on - strand, within GFF2379 at 434.440 kb on - strand, within GFF2379 at 434.623 kb on + strand at 434.623 kb on + strand at 434.624 kb on - strand at 434.624 kb on - strand at 434.624 kb on - strand at 434.629 kb on + strand at 434.629 kb on + strand at 434.629 kb on + strand at 434.629 kb on + strand at 434.630 kb on - strand at 434.630 kb on - strand at 434.630 kb on - strand at 434.630 kb on - strand at 434.630 kb on - strand at 434.630 kb on - strand at 434.630 kb on - strand at 434.630 kb on - strand at 434.732 kb on - strand, within GFF2380 at 434.818 kb on + strand, within GFF2380 at 434.923 kb on + strand, within GFF2380 at 434.923 kb on + strand, within GFF2380 at 434.923 kb on + strand, within GFF2380 at 434.923 kb on + strand, within GFF2380 at 434.923 kb on + strand, within GFF2380 at 434.924 kb on - strand, within GFF2380 at 434.924 kb on - strand, within GFF2380 at 434.924 kb on - strand, within GFF2380 at 434.924 kb on - strand, within GFF2380
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 432,587 + +0.7 432,588 - -0.3 433,541 + -1.7 433,594 - -0.9 433,603 + -0.9 433,603 + -2.7 433,603 + -1.1 433,603 + +1.7 433,603 + -1.0 433,604 - -2.0 433,604 - -1.3 433,604 - +0.8 433,638 + -1.3 433,638 + -1.0 433,638 + -0.3 433,639 - -1.3 433,639 - -1.0 433,683 + GFF2379 0.14 -0.8 433,683 + GFF2379 0.14 -1.2 433,759 - GFF2379 0.22 -1.7 433,866 + GFF2379 0.32 -0.5 433,866 + GFF2379 0.32 -0.2 433,866 + GFF2379 0.32 -1.1 433,866 + GFF2379 0.32 -0.8 433,866 + GFF2379 0.32 +0.2 433,866 + GFF2379 0.32 -1.9 433,866 + GFF2379 0.32 +0.1 433,866 + GFF2379 0.32 -2.8 433,866 + GFF2379 0.32 -0.9 433,866 + GFF2379 0.32 -0.9 433,866 + GFF2379 0.32 -1.2 433,866 + GFF2379 0.32 -2.0 433,866 + GFF2379 0.32 -1.3 433,866 + GFF2379 0.32 -1.4 433,866 + GFF2379 0.32 -2.6 433,866 + GFF2379 0.32 -1.0 433,866 + GFF2379 0.32 -1.1 433,866 + GFF2379 0.32 -0.9 433,867 - GFF2379 0.32 +0.4 433,867 - GFF2379 0.32 -0.4 433,867 - GFF2379 0.32 -1.5 433,867 - GFF2379 0.32 -1.2 433,867 - GFF2379 0.32 -0.4 433,867 - GFF2379 0.32 -1.5 433,867 - GFF2379 0.32 -0.8 433,867 - GFF2379 0.32 -0.8 433,867 - GFF2379 0.32 -0.8 433,867 - GFF2379 0.32 -1.5 433,867 - GFF2379 0.32 +0.1 433,867 - GFF2379 0.32 -1.5 433,867 - GFF2379 0.32 -1.5 433,881 + GFF2379 0.34 -0.1 433,881 + GFF2379 0.34 +0.1 433,881 + GFF2379 0.34 -2.2 433,881 + GFF2379 0.34 -0.7 433,881 + GFF2379 0.34 -1.5 433,882 - GFF2379 0.34 -0.7 433,882 - GFF2379 0.34 -1.2 433,882 - GFF2379 0.34 -0.8 434,013 + GFF2379 0.47 -0.8 434,013 + GFF2379 0.47 -1.5 434,013 + GFF2379 0.47 -1.2 434,014 - GFF2379 0.47 +0.2 434,014 - GFF2379 0.47 -0.8 434,014 - GFF2379 0.47 -1.4 434,014 - GFF2379 0.47 -1.0 434,142 + GFF2379 0.60 -0.3 434,142 + GFF2379 0.60 -0.7 434,142 + GFF2379 0.60 -1.5 434,142 + GFF2379 0.60 -2.0 434,142 + GFF2379 0.60 -2.2 434,142 + GFF2379 0.60 -1.6 434,142 + GFF2379 0.60 -1.2 434,142 + GFF2379 0.60 -1.3 434,142 + GFF2379 0.60 -1.3 434,142 + GFF2379 0.60 -1.2 434,142 + GFF2379 0.60 -1.8 434,142 + GFF2379 0.60 -1.5 434,143 - GFF2379 0.60 -1.8 434,143 - GFF2379 0.60 -0.8 434,143 - GFF2379 0.60 -1.9 434,143 - GFF2379 0.60 -1.7 434,172 + GFF2379 0.62 -0.6 434,172 + GFF2379 0.62 -1.2 434,172 + GFF2379 0.62 -1.5 434,173 - GFF2379 0.63 -0.8 434,173 - GFF2379 0.63 +1.1 434,211 + GFF2379 0.66 -2.3 434,211 + GFF2379 0.66 -1.0 434,211 + GFF2379 0.66 -0.5 434,211 + GFF2379 0.66 -1.5 434,211 + GFF2379 0.66 -1.4 434,211 + GFF2379 0.66 -0.7 434,211 + GFF2379 0.66 -2.3 434,211 + GFF2379 0.66 +1.7 434,211 + GFF2379 0.66 -0.5 434,211 + GFF2379 0.66 -1.5 434,212 - GFF2379 0.66 -0.9 434,212 - GFF2379 0.66 -1.3 434,212 - GFF2379 0.66 -2.7 434,212 - GFF2379 0.66 -1.3 434,212 - GFF2379 0.66 +0.5 434,212 - GFF2379 0.66 -1.9 434,212 - GFF2379 0.66 -0.4 434,212 - GFF2379 0.66 -0.9 434,212 - GFF2379 0.66 -1.0 434,212 - GFF2379 0.66 -1.2 434,212 - GFF2379 0.66 -3.2 434,212 - GFF2379 0.66 -1.5 434,212 - GFF2379 0.66 -1.5 434,232 + GFF2379 0.68 -0.7 434,232 + GFF2379 0.68 -0.9 434,232 + GFF2379 0.68 -1.4 434,232 + GFF2379 0.68 -1.5 434,232 + GFF2379 0.68 -0.5 434,233 - GFF2379 0.69 -3.1 434,233 - GFF2379 0.69 -0.9 434,233 - GFF2379 0.69 -1.4 434,233 - GFF2379 0.69 -1.8 434,233 - GFF2379 0.69 -0.6 434,325 + GFF2379 0.78 -0.3 434,325 + GFF2379 0.78 -1.9 434,325 + GFF2379 0.78 -1.6 434,325 + GFF2379 0.78 -1.5 434,326 - GFF2379 0.78 -1.9 434,326 - GFF2379 0.78 -0.5 434,326 - GFF2379 0.78 +0.7 434,440 - GFF2379 0.89 -0.7 434,440 - GFF2379 0.89 -1.2 434,623 + -0.4 434,623 + -0.6 434,624 - -1.1 434,624 - -0.2 434,624 - -0.2 434,629 + -0.3 434,629 + +0.3 434,629 + -0.9 434,629 + +0.1 434,630 - -0.2 434,630 - -0.7 434,630 - -1.0 434,630 - +1.0 434,630 - +0.7 434,630 - -0.7 434,630 - -0.5 434,630 - -1.0 434,732 - GFF2380 0.19 -0.2 434,818 + GFF2380 0.29 +0.5 434,923 + GFF2380 0.40 -0.7 434,923 + GFF2380 0.40 +1.5 434,923 + GFF2380 0.40 -0.8 434,923 + GFF2380 0.40 -1.3 434,923 + GFF2380 0.40 -1.5 434,924 - GFF2380 0.40 -1.5 434,924 - GFF2380 0.40 -0.3 434,924 - GFF2380 0.40 -0.5 434,924 - GFF2380 0.40 -0.9
Or see this region's nucleotide sequence