Strain Fitness in Variovorax sp. SCN45 around GFF1852

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1851 and GFF1852 are separated by 23 nucleotidesGFF1852 and GFF1853 are separated by 104 nucleotidesGFF1853 and GFF1854 are separated by 13 nucleotides GFF1851 - TOMM biosynthesis cyclodehydratase (protein C) / TOMM biosynthesis docking scaffold (protein D), at 525,541 to 527,778 GFF1851 GFF1852 - FHA domain protein, at 527,802 to 528,740 GFF1852 GFF1853 - no description, at 528,845 to 529,504 GFF1853 GFF1854 - hypothetical protein, at 529,518 to 530,003 GFF1854 Position (kb) 527 528 529Strain fitness (log2 ratio) -2 -1 0 1 2at 527.050 kb on + strand, within GFF1851at 527.050 kb on + strand, within GFF1851at 527.050 kb on + strand, within GFF1851at 527.051 kb on - strand, within GFF1851at 527.051 kb on - strand, within GFF1851at 527.051 kb on - strand, within GFF1851at 527.091 kb on + strand, within GFF1851at 527.091 kb on + strand, within GFF1851at 527.091 kb on + strand, within GFF1851at 527.161 kb on + strand, within GFF1851at 527.161 kb on + strand, within GFF1851at 527.162 kb on - strand, within GFF1851at 527.307 kb on - strand, within GFF1851at 527.699 kb on - strandat 527.770 kb on + strandat 527.770 kb on + strandat 527.770 kb on + strandat 527.770 kb on + strandat 527.770 kb on + strandat 527.770 kb on + strandat 527.770 kb on + strandat 527.771 kb on - strandat 527.771 kb on - strandat 527.771 kb on - strandat 527.771 kb on - strandat 527.771 kb on - strandat 527.771 kb on - strandat 527.771 kb on - strandat 527.794 kb on + strandat 527.794 kb on + strandat 527.794 kb on + strandat 527.794 kb on + strandat 527.794 kb on + strandat 527.794 kb on + strandat 527.794 kb on + strandat 527.794 kb on + strandat 527.794 kb on + strandat 527.795 kb on - strandat 527.795 kb on - strandat 527.795 kb on - strandat 527.795 kb on - strandat 527.795 kb on - strandat 527.801 kb on + strandat 527.801 kb on + strandat 527.801 kb on + strandat 527.801 kb on + strandat 527.801 kb on + strandat 527.801 kb on + strandat 527.801 kb on + strandat 527.801 kb on + strandat 527.802 kb on - strandat 527.802 kb on - strandat 527.802 kb on - strandat 527.802 kb on - strandat 527.802 kb on - strandat 527.802 kb on - strandat 527.911 kb on + strand, within GFF1852at 527.911 kb on + strand, within GFF1852at 527.911 kb on + strand, within GFF1852at 527.912 kb on - strand, within GFF1852at 527.912 kb on - strand, within GFF1852at 527.912 kb on - strand, within GFF1852at 527.912 kb on - strand, within GFF1852at 527.912 kb on - strand, within GFF1852at 527.912 kb on - strand, within GFF1852at 527.912 kb on - strand, within GFF1852at 527.912 kb on - strand, within GFF1852at 527.912 kb on - strand, within GFF1852at 528.201 kb on + strand, within GFF1852at 528.201 kb on + strand, within GFF1852at 528.201 kb on + strand, within GFF1852at 528.201 kb on + strand, within GFF1852at 528.201 kb on + strand, within GFF1852at 528.201 kb on + strand, within GFF1852at 528.201 kb on + strand, within GFF1852at 528.201 kb on + strand, within GFF1852at 528.201 kb on + strand, within GFF1852at 528.202 kb on - strand, within GFF1852at 528.202 kb on - strand, within GFF1852at 528.202 kb on - strand, within GFF1852at 528.202 kb on - strand, within GFF1852at 528.202 kb on - strand, within GFF1852at 528.468 kb on + strand, within GFF1852at 528.468 kb on + strand, within GFF1852at 528.468 kb on + strand, within GFF1852at 528.468 kb on + strand, within GFF1852at 528.468 kb on + strand, within GFF1852at 528.468 kb on + strand, within GFF1852at 528.468 kb on + strand, within GFF1852at 528.468 kb on + strand, within GFF1852at 528.468 kb on + strand, within GFF1852at 528.469 kb on - strand, within GFF1852at 528.469 kb on - strand, within GFF1852at 528.469 kb on - strand, within GFF1852at 528.469 kb on - strand, within GFF1852at 528.469 kb on - strand, within GFF1852at 528.469 kb on - strand, within GFF1852at 528.469 kb on - strand, within GFF1852at 528.469 kb on - strand, within GFF1852at 528.588 kb on + strand, within GFF1852at 528.588 kb on + strand, within GFF1852at 528.588 kb on + strand, within GFF1852at 528.588 kb on + strand, within GFF1852at 528.589 kb on - strand, within GFF1852at 528.589 kb on - strand, within GFF1852at 528.589 kb on - strand, within GFF1852at 528.589 kb on - strand, within GFF1852at 528.589 kb on - strand, within GFF1852at 528.589 kb on - strand, within GFF1852at 528.589 kb on - strand, within GFF1852at 528.589 kb on - strand, within GFF1852at 528.625 kb on + strand, within GFF1852at 528.625 kb on + strand, within GFF1852at 528.626 kb on - strand, within GFF1852at 528.626 kb on - strand, within GFF1852at 528.626 kb on - strand, within GFF1852at 528.703 kb on - strandat 528.738 kb on + strandat 528.748 kb on + strandat 528.748 kb on + strandat 528.748 kb on + strandat 528.748 kb on + strandat 528.749 kb on - strandat 528.774 kb on + strandat 528.774 kb on + strandat 528.775 kb on - strandat 528.775 kb on - strandat 528.968 kb on + strand, within GFF1853at 528.968 kb on + strand, within GFF1853at 528.968 kb on + strand, within GFF1853at 528.968 kb on + strand, within GFF1853at 529.085 kb on + strand, within GFF1853at 529.085 kb on + strand, within GFF1853at 529.085 kb on + strand, within GFF1853at 529.085 kb on + strand, within GFF1853at 529.085 kb on + strand, within GFF1853at 529.086 kb on - strand, within GFF1853at 529.086 kb on - strand, within GFF1853at 529.086 kb on - strand, within GFF1853at 529.086 kb on - strand, within GFF1853at 529.139 kb on + strand, within GFF1853at 529.140 kb on - strand, within GFF1853at 529.140 kb on - strand, within GFF1853at 529.140 kb on - strand, within GFF1853at 529.184 kb on + strand, within GFF1853at 529.184 kb on + strand, within GFF1853at 529.184 kb on + strand, within GFF1853at 529.184 kb on + strand, within GFF1853at 529.185 kb on - strand, within GFF1853at 529.185 kb on - strand, within GFF1853at 529.185 kb on - strand, within GFF1853at 529.185 kb on - strand, within GFF1853at 529.259 kb on + strand, within GFF1853at 529.259 kb on + strand, within GFF1853at 529.314 kb on - strand, within GFF1853at 529.325 kb on + strand, within GFF1853at 529.334 kb on + strand, within GFF1853at 529.535 kb on + strandat 529.536 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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527,050 + GFF1851 0.67 -0.4
527,050 + GFF1851 0.67 -0.4
527,050 + GFF1851 0.67 -0.5
527,051 - GFF1851 0.67 -0.2
527,051 - GFF1851 0.67 -0.3
527,051 - GFF1851 0.67 +0.3
527,091 + GFF1851 0.69 -0.0
527,091 + GFF1851 0.69 -0.5
527,091 + GFF1851 0.69 +1.4
527,161 + GFF1851 0.72 -0.0
527,161 + GFF1851 0.72 -1.1
527,162 - GFF1851 0.72 -0.4
527,307 - GFF1851 0.79 -0.4
527,699 - +0.1
527,770 + -0.8
527,770 + -0.2
527,770 + -0.8
527,770 + +0.8
527,770 + -0.5
527,770 + +0.0
527,770 + +0.7
527,771 - -0.6
527,771 - -1.2
527,771 - -0.3
527,771 - -0.5
527,771 - -0.5
527,771 - +0.1
527,771 - -0.1
527,794 + -0.8
527,794 + +0.3
527,794 + +0.1
527,794 + +0.1
527,794 + -0.9
527,794 + -0.4
527,794 + -0.9
527,794 + +0.3
527,794 + +0.3
527,795 - -1.4
527,795 - -1.2
527,795 - +0.1
527,795 - +0.0
527,795 - -0.3
527,801 + -1.5
527,801 + -0.3
527,801 + -0.1
527,801 + +0.1
527,801 + -0.5
527,801 + -0.9
527,801 + -0.1
527,801 + +0.1
527,802 - +1.7
527,802 - +0.4
527,802 - +1.0
527,802 - -0.4
527,802 - -2.1
527,802 - -0.8
527,911 + GFF1852 0.12 +0.7
527,911 + GFF1852 0.12 +1.0
527,911 + GFF1852 0.12 -0.7
527,912 - GFF1852 0.12 -1.5
527,912 - GFF1852 0.12 +0.0
527,912 - GFF1852 0.12 -0.6
527,912 - GFF1852 0.12 +0.1
527,912 - GFF1852 0.12 -0.5
527,912 - GFF1852 0.12 +0.3
527,912 - GFF1852 0.12 -2.3
527,912 - GFF1852 0.12 -0.5
527,912 - GFF1852 0.12 -0.3
528,201 + GFF1852 0.42 -0.3
528,201 + GFF1852 0.42 +1.0
528,201 + GFF1852 0.42 -0.5
528,201 + GFF1852 0.42 +0.6
528,201 + GFF1852 0.42 +0.2
528,201 + GFF1852 0.42 -0.0
528,201 + GFF1852 0.42 -0.5
528,201 + GFF1852 0.42 -0.0
528,201 + GFF1852 0.42 +1.7
528,202 - GFF1852 0.43 -0.6
528,202 - GFF1852 0.43 -2.0
528,202 - GFF1852 0.43 -0.3
528,202 - GFF1852 0.43 -0.4
528,202 - GFF1852 0.43 +0.6
528,468 + GFF1852 0.71 +0.1
528,468 + GFF1852 0.71 -0.1
528,468 + GFF1852 0.71 -0.3
528,468 + GFF1852 0.71 +0.1
528,468 + GFF1852 0.71 -0.2
528,468 + GFF1852 0.71 +0.2
528,468 + GFF1852 0.71 +0.2
528,468 + GFF1852 0.71 -0.9
528,468 + GFF1852 0.71 -0.8
528,469 - GFF1852 0.71 +0.8
528,469 - GFF1852 0.71 +0.2
528,469 - GFF1852 0.71 -0.5
528,469 - GFF1852 0.71 -0.1
528,469 - GFF1852 0.71 -1.5
528,469 - GFF1852 0.71 -0.0
528,469 - GFF1852 0.71 -0.6
528,469 - GFF1852 0.71 -0.8
528,588 + GFF1852 0.84 -0.3
528,588 + GFF1852 0.84 +1.7
528,588 + GFF1852 0.84 +0.2
528,588 + GFF1852 0.84 -0.8
528,589 - GFF1852 0.84 -0.5
528,589 - GFF1852 0.84 +0.4
528,589 - GFF1852 0.84 -1.6
528,589 - GFF1852 0.84 +0.5
528,589 - GFF1852 0.84 +0.3
528,589 - GFF1852 0.84 +0.0
528,589 - GFF1852 0.84 -0.6
528,589 - GFF1852 0.84 +0.1
528,625 + GFF1852 0.88 -0.5
528,625 + GFF1852 0.88 +0.2
528,626 - GFF1852 0.88 -0.8
528,626 - GFF1852 0.88 -0.6
528,626 - GFF1852 0.88 +2.1
528,703 - +1.1
528,738 + -0.1
528,748 + +0.1
528,748 + +0.5
528,748 + +0.5
528,748 + +0.7
528,749 - -0.6
528,774 + -1.1
528,774 + -0.1
528,775 - -0.2
528,775 - -0.3
528,968 + GFF1853 0.19 -0.2
528,968 + GFF1853 0.19 +0.7
528,968 + GFF1853 0.19 +0.6
528,968 + GFF1853 0.19 -0.3
529,085 + GFF1853 0.36 -1.4
529,085 + GFF1853 0.36 +0.9
529,085 + GFF1853 0.36 +0.4
529,085 + GFF1853 0.36 +0.8
529,085 + GFF1853 0.36 -0.0
529,086 - GFF1853 0.37 -0.1
529,086 - GFF1853 0.37 -0.5
529,086 - GFF1853 0.37 -1.6
529,086 - GFF1853 0.37 -0.6
529,139 + GFF1853 0.45 -1.5
529,140 - GFF1853 0.45 -0.2
529,140 - GFF1853 0.45 +2.5
529,140 - GFF1853 0.45 -1.0
529,184 + GFF1853 0.51 -1.0
529,184 + GFF1853 0.51 -1.2
529,184 + GFF1853 0.51 -1.6
529,184 + GFF1853 0.51 +2.0
529,185 - GFF1853 0.52 -0.1
529,185 - GFF1853 0.52 +0.9
529,185 - GFF1853 0.52 +0.7
529,185 - GFF1853 0.52 -0.2
529,259 + GFF1853 0.63 -0.9
529,259 + GFF1853 0.63 +0.2
529,314 - GFF1853 0.71 +0.8
529,325 + GFF1853 0.73 +0.1
529,334 + GFF1853 0.74 -0.3
529,535 + -0.1
529,536 - +0.0

Or see this region's nucleotide sequence