Strain Fitness in Variovorax sp. SCN45 around GFF1484

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
75,543	+		GFF1482	0.88	+0.3
75,740	-		GFF1483	0.15	+1.6
75,976	-		GFF1483	0.44	-0.9
76,405	+				-0.4
76,485	-				-0.2
76,505	+				-0.3
76,506	-				-0.8
76,513	+				+1.3
76,513	+				+0.6
76,514	-				-0.9
76,514	-				-0.1
76,516	+				-0.3
76,532	+				-0.6
76,533	-				+0.4
76,813	+		GFF1484	0.33	+0.4
76,813	+		GFF1484	0.33	-0.2
76,813	+		GFF1484	0.33	-0.8
76,815	+		GFF1484	0.33	+1.6
76,815	+		GFF1484	0.33	-2.4
76,815	+		GFF1484	0.33	-0.4
76,815	+		GFF1484	0.33	-1.2
76,815	+		GFF1484	0.33	-0.9
76,816	-		GFF1484	0.33	-0.2
76,816	-		GFF1484	0.33	-2.2
76,816	-		GFF1484	0.33	-1.4
76,831	+		GFF1484	0.35	-0.2
76,918	+		GFF1484	0.45	-0.5
76,958	+		GFF1484	0.49	-0.6
77,003	+		GFF1484	0.54	-0.3
77,004	-		GFF1484	0.54	-1.1
77,004	-		GFF1484	0.54	+2.2
77,114	-		GFF1484	0.67	+0.1
77,267	+		GFF1484	0.84	-0.4
77,268	-		GFF1484	0.84	+1.6
77,478	+				-0.7
77,478	+				-0.3
77,478	+				-0.4
77,478	+				-0.9
77,478	+				-0.7
77,479	-				-0.8
77,684	+				-0.8
77,684	+				-0.9
77,684	+				-0.0
77,686	+				-0.5
77,686	+				-0.1
77,687	-				-0.7
77,687	-				+0.1
77,961	+		GFF1485	0.41	-1.1
78,076	+		GFF1485	0.55	-0.1
78,077	-		GFF1485	0.55	-0.9
78,187	+		GFF1485	0.68	-1.1
78,188	-		GFF1485	0.68	+1.6
78,332	+		GFF1485	0.86	+0.4