Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06948

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06946 and MPMX19_06947 overlap by 1 nucleotidesMPMX19_06947 and MPMX19_06948 overlap by 4 nucleotidesMPMX19_06948 and MPMX19_06949 overlap by 4 nucleotides MPMX19_06946: MPMX19_06946 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 221,667 to 222,515 _06946 MPMX19_06947: MPMX19_06947 - hypothetical protein, at 222,515 to 222,898 _06947 MPMX19_06948: MPMX19_06948 - Peptidyl-lysine N-acetyltransferase Pat, at 222,895 to 225,072 _06948 MPMX19_06949: MPMX19_06949 - Acryloyl-CoA reductase (NADH), at 225,069 to 226,232 _06949 Position (kb) 222 223 224 225 226Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 221.911 kb on + strand, within MPMX19_06946at 221.911 kb on + strand, within MPMX19_06946at 221.911 kb on + strand, within MPMX19_06946at 221.912 kb on - strand, within MPMX19_06946at 221.912 kb on - strand, within MPMX19_06946at 221.917 kb on + strand, within MPMX19_06946at 221.917 kb on + strand, within MPMX19_06946at 221.917 kb on + strand, within MPMX19_06946at 221.917 kb on + strand, within MPMX19_06946at 221.918 kb on - strand, within MPMX19_06946at 221.918 kb on - strand, within MPMX19_06946at 221.918 kb on - strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 222.076 kb on + strand, within MPMX19_06946at 222.076 kb on + strand, within MPMX19_06946at 222.076 kb on + strand, within MPMX19_06946at 222.076 kb on + strand, within MPMX19_06946at 222.077 kb on - strand, within MPMX19_06946at 222.077 kb on - strand, within MPMX19_06946at 222.079 kb on + strand, within MPMX19_06946at 222.080 kb on - strand, within MPMX19_06946at 222.080 kb on - strand, within MPMX19_06946at 222.080 kb on - strand, within MPMX19_06946at 222.162 kb on - strand, within MPMX19_06946at 222.162 kb on - strand, within MPMX19_06946at 222.241 kb on + strand, within MPMX19_06946at 222.241 kb on + strand, within MPMX19_06946at 222.242 kb on - strand, within MPMX19_06946at 222.263 kb on - strand, within MPMX19_06946at 222.263 kb on - strand, within MPMX19_06946at 222.263 kb on - strand, within MPMX19_06946at 222.408 kb on + strand, within MPMX19_06946at 222.408 kb on + strand, within MPMX19_06946at 222.409 kb on - strand, within MPMX19_06946at 222.409 kb on - strand, within MPMX19_06946at 222.442 kb on + strandat 222.442 kb on + strandat 222.443 kb on - strandat 222.466 kb on + strandat 222.466 kb on + strandat 222.467 kb on - strandat 222.481 kb on + strandat 222.481 kb on + strandat 222.481 kb on + strandat 222.482 kb on - strandat 222.482 kb on - strandat 222.482 kb on - strandat 222.564 kb on + strand, within MPMX19_06947at 222.564 kb on + strand, within MPMX19_06947at 222.564 kb on + strand, within MPMX19_06947at 222.564 kb on + strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.780 kb on + strand, within MPMX19_06947at 222.781 kb on - strand, within MPMX19_06947at 223.223 kb on + strand, within MPMX19_06948at 223.224 kb on - strand, within MPMX19_06948at 223.224 kb on - strand, within MPMX19_06948at 223.496 kb on + strand, within MPMX19_06948at 223.497 kb on - strand, within MPMX19_06948at 223.583 kb on + strand, within MPMX19_06948at 223.583 kb on + strand, within MPMX19_06948at 223.583 kb on + strand, within MPMX19_06948at 223.946 kb on + strand, within MPMX19_06948at 223.946 kb on + strand, within MPMX19_06948at 223.946 kb on + strand, within MPMX19_06948at 223.947 kb on - strand, within MPMX19_06948at 223.947 kb on - strand, within MPMX19_06948at 224.309 kb on + strand, within MPMX19_06948at 224.309 kb on + strand, within MPMX19_06948at 224.310 kb on - strand, within MPMX19_06948at 224.310 kb on - strand, within MPMX19_06948at 224.310 kb on - strand, within MPMX19_06948at 224.310 kb on - strand, within MPMX19_06948at 224.400 kb on - strand, within MPMX19_06948at 224.672 kb on + strand, within MPMX19_06948at 224.673 kb on - strand, within MPMX19_06948at 224.788 kb on + strand, within MPMX19_06948at 224.788 kb on + strand, within MPMX19_06948at 224.912 kb on + strandat 224.912 kb on + strandat 224.913 kb on - strandat 224.913 kb on - strandat 224.928 kb on - strandat 225.197 kb on - strand, within MPMX19_06949at 225.197 kb on - strand, within MPMX19_06949at 225.197 kb on - strand, within MPMX19_06949at 225.218 kb on + strand, within MPMX19_06949at 225.218 kb on + strand, within MPMX19_06949at 225.218 kb on + strand, within MPMX19_06949at 225.219 kb on - strand, within MPMX19_06949at 225.220 kb on + strand, within MPMX19_06949at 225.220 kb on + strand, within MPMX19_06949at 225.220 kb on + strand, within MPMX19_06949at 225.221 kb on - strand, within MPMX19_06949at 225.221 kb on - strand, within MPMX19_06949at 225.221 kb on - strand, within MPMX19_06949at 225.307 kb on + strand, within MPMX19_06949at 225.308 kb on - strand, within MPMX19_06949at 225.308 kb on - strand, within MPMX19_06949at 225.350 kb on - strand, within MPMX19_06949at 225.585 kb on - strand, within MPMX19_06949at 225.585 kb on - strand, within MPMX19_06949at 225.607 kb on + strand, within MPMX19_06949at 225.607 kb on + strand, within MPMX19_06949at 225.607 kb on + strand, within MPMX19_06949at 225.607 kb on + strand, within MPMX19_06949at 225.608 kb on - strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.932 kb on - strand, within MPMX19_06949

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
remove
221,911 + MPMX19_06946 0.29 +0.3
221,911 + MPMX19_06946 0.29 -1.6
221,911 + MPMX19_06946 0.29 +0.0
221,912 - MPMX19_06946 0.29 +0.8
221,912 - MPMX19_06946 0.29 -2.9
221,917 + MPMX19_06946 0.29 -0.6
221,917 + MPMX19_06946 0.29 +0.6
221,917 + MPMX19_06946 0.29 +1.1
221,917 + MPMX19_06946 0.29 -1.3
221,918 - MPMX19_06946 0.30 -0.8
221,918 - MPMX19_06946 0.30 +0.3
221,918 - MPMX19_06946 0.30 -3.7
221,956 + MPMX19_06946 0.34 -0.7
221,956 + MPMX19_06946 0.34 -1.7
221,956 + MPMX19_06946 0.34 +0.7
221,956 + MPMX19_06946 0.34 -0.4
221,956 + MPMX19_06946 0.34 -0.6
221,956 + MPMX19_06946 0.34 +0.6
221,957 - MPMX19_06946 0.34 -1.1
221,957 - MPMX19_06946 0.34 -0.1
221,957 - MPMX19_06946 0.34 -0.8
221,957 - MPMX19_06946 0.34 -0.2
221,957 - MPMX19_06946 0.34 -0.1
221,957 - MPMX19_06946 0.34 -0.5
221,957 - MPMX19_06946 0.34 -1.1
221,957 - MPMX19_06946 0.34 -1.4
221,957 - MPMX19_06946 0.34 -0.4
222,076 + MPMX19_06946 0.48 +0.2
222,076 + MPMX19_06946 0.48 -0.4
222,076 + MPMX19_06946 0.48 -0.5
222,076 + MPMX19_06946 0.48 -0.1
222,077 - MPMX19_06946 0.48 +0.4
222,077 - MPMX19_06946 0.48 -0.5
222,079 + MPMX19_06946 0.49 +0.4
222,080 - MPMX19_06946 0.49 +2.5
222,080 - MPMX19_06946 0.49 +0.2
222,080 - MPMX19_06946 0.49 -2.1
222,162 - MPMX19_06946 0.58 -1.1
222,162 - MPMX19_06946 0.58 -0.1
222,241 + MPMX19_06946 0.68 +1.2
222,241 + MPMX19_06946 0.68 -0.9
222,242 - MPMX19_06946 0.68 +0.3
222,263 - MPMX19_06946 0.70 -0.7
222,263 - MPMX19_06946 0.70 -1.3
222,263 - MPMX19_06946 0.70 +1.0
222,408 + MPMX19_06946 0.87 -0.1
222,408 + MPMX19_06946 0.87 -1.7
222,409 - MPMX19_06946 0.87 -1.5
222,409 - MPMX19_06946 0.87 +1.3
222,442 + -1.7
222,442 + -0.9
222,443 - -0.1
222,466 + -0.1
222,466 + +1.2
222,467 - -0.2
222,481 + -0.8
222,481 + -0.2
222,481 + +1.2
222,482 - -1.0
222,482 - +0.8
222,482 - -1.3
222,564 + MPMX19_06947 0.13 -0.5
222,564 + MPMX19_06947 0.13 +0.1
222,564 + MPMX19_06947 0.13 +0.2
222,564 + MPMX19_06947 0.13 -0.7
222,565 - MPMX19_06947 0.13 +0.7
222,565 - MPMX19_06947 0.13 +0.9
222,565 - MPMX19_06947 0.13 +0.2
222,565 - MPMX19_06947 0.13 -0.1
222,565 - MPMX19_06947 0.13 +0.8
222,565 - MPMX19_06947 0.13 +0.8
222,565 - MPMX19_06947 0.13 -1.1
222,780 + MPMX19_06947 0.69 +1.5
222,781 - MPMX19_06947 0.69 -0.2
223,223 + MPMX19_06948 0.15 -0.4
223,224 - MPMX19_06948 0.15 +0.0
223,224 - MPMX19_06948 0.15 -0.3
223,496 + MPMX19_06948 0.28 +0.3
223,497 - MPMX19_06948 0.28 -0.1
223,583 + MPMX19_06948 0.32 -1.1
223,583 + MPMX19_06948 0.32 +1.3
223,583 + MPMX19_06948 0.32 +0.4
223,946 + MPMX19_06948 0.48 -0.2
223,946 + MPMX19_06948 0.48 -0.8
223,946 + MPMX19_06948 0.48 -0.6
223,947 - MPMX19_06948 0.48 +1.7
223,947 - MPMX19_06948 0.48 -0.7
224,309 + MPMX19_06948 0.65 +0.4
224,309 + MPMX19_06948 0.65 -0.4
224,310 - MPMX19_06948 0.65 -0.2
224,310 - MPMX19_06948 0.65 -0.5
224,310 - MPMX19_06948 0.65 -0.4
224,310 - MPMX19_06948 0.65 -0.8
224,400 - MPMX19_06948 0.69 +0.5
224,672 + MPMX19_06948 0.82 +0.8
224,673 - MPMX19_06948 0.82 +0.5
224,788 + MPMX19_06948 0.87 -0.4
224,788 + MPMX19_06948 0.87 +0.2
224,912 + -1.6
224,912 + +0.3
224,913 - -0.1
224,913 - -0.9
224,928 - -0.5
225,197 - MPMX19_06949 0.11 +0.3
225,197 - MPMX19_06949 0.11 -1.4
225,197 - MPMX19_06949 0.11 +0.9
225,218 + MPMX19_06949 0.13 -0.3
225,218 + MPMX19_06949 0.13 -0.9
225,218 + MPMX19_06949 0.13 -0.8
225,219 - MPMX19_06949 0.13 -0.6
225,220 + MPMX19_06949 0.13 +0.2
225,220 + MPMX19_06949 0.13 -1.8
225,220 + MPMX19_06949 0.13 -1.5
225,221 - MPMX19_06949 0.13 -0.3
225,221 - MPMX19_06949 0.13 -0.1
225,221 - MPMX19_06949 0.13 -0.1
225,307 + MPMX19_06949 0.20 +0.4
225,308 - MPMX19_06949 0.21 +0.0
225,308 - MPMX19_06949 0.21 -0.8
225,350 - MPMX19_06949 0.24 +1.5
225,585 - MPMX19_06949 0.44 +1.0
225,585 - MPMX19_06949 0.44 +0.6
225,607 + MPMX19_06949 0.46 -0.2
225,607 + MPMX19_06949 0.46 -1.1
225,607 + MPMX19_06949 0.46 -1.4
225,607 + MPMX19_06949 0.46 -0.8
225,608 - MPMX19_06949 0.46 +0.8
225,727 + MPMX19_06949 0.57 -0.3
225,727 + MPMX19_06949 0.57 +0.3
225,727 + MPMX19_06949 0.57 -0.6
225,727 + MPMX19_06949 0.57 +0.3
225,727 + MPMX19_06949 0.57 -1.3
225,727 + MPMX19_06949 0.57 +0.4
225,727 + MPMX19_06949 0.57 +0.3
225,727 + MPMX19_06949 0.57 +0.4
225,727 + MPMX19_06949 0.57 +0.5
225,727 + MPMX19_06949 0.57 -0.5
225,727 + MPMX19_06949 0.57 -0.4
225,727 + MPMX19_06949 0.57 -2.4
225,727 + MPMX19_06949 0.57 -1.2
225,728 - MPMX19_06949 0.57 +0.0
225,728 - MPMX19_06949 0.57 -0.5
225,728 - MPMX19_06949 0.57 -0.1
225,728 - MPMX19_06949 0.57 -0.1
225,728 - MPMX19_06949 0.57 +1.3
225,728 - MPMX19_06949 0.57 -0.2
225,728 - MPMX19_06949 0.57 -1.7
225,728 - MPMX19_06949 0.57 -0.5
225,728 - MPMX19_06949 0.57 -0.5
225,728 - MPMX19_06949 0.57 -0.4
225,790 + MPMX19_06949 0.62 +1.3
225,790 + MPMX19_06949 0.62 +0.6
225,790 + MPMX19_06949 0.62 +1.5
225,790 + MPMX19_06949 0.62 +0.1
225,790 + MPMX19_06949 0.62 -0.1
225,790 + MPMX19_06949 0.62 +1.4
225,790 + MPMX19_06949 0.62 -1.1
225,791 - MPMX19_06949 0.62 +1.0
225,791 - MPMX19_06949 0.62 -0.5
225,791 - MPMX19_06949 0.62 -0.1
225,791 - MPMX19_06949 0.62 +0.4
225,791 - MPMX19_06949 0.62 -0.7
225,791 - MPMX19_06949 0.62 +0.9
225,791 - MPMX19_06949 0.62 -0.4
225,932 - MPMX19_06949 0.74 +0.1

Or see this region's nucleotide sequence