Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06578 and MPMX19_06579 overlap by 4 nucleotides MPMX19_06579 and MPMX19_06580 are separated by 8 nucleotides
MPMX19_06578: MPMX19_06578 - hypothetical protein, at 51,411 to 52,430
_06578
MPMX19_06579: MPMX19_06579 - Carnitine monooxygenase oxygenase subunit, at 52,427 to 53,068
_06579
MPMX19_06580: MPMX19_06580 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 53,077 to 53,841
_06580
Position (kb) 52
53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 51.496 kb on + strand at 51.496 kb on + strand at 51.496 kb on + strand at 51.496 kb on + strand at 51.496 kb on + strand at 51.496 kb on + strand at 51.496 kb on + strand at 51.496 kb on + strand at 51.496 kb on + strand at 51.497 kb on - strand at 51.497 kb on - strand at 51.497 kb on - strand at 51.497 kb on - strand at 51.497 kb on - strand at 51.604 kb on + strand, within MPMX19_06578 at 51.604 kb on + strand, within MPMX19_06578 at 51.604 kb on + strand, within MPMX19_06578 at 51.605 kb on - strand, within MPMX19_06578 at 51.605 kb on - strand, within MPMX19_06578 at 51.605 kb on - strand, within MPMX19_06578 at 51.605 kb on - strand, within MPMX19_06578 at 51.605 kb on - strand, within MPMX19_06578 at 51.739 kb on + strand, within MPMX19_06578 at 51.739 kb on + strand, within MPMX19_06578 at 51.739 kb on + strand, within MPMX19_06578 at 51.739 kb on + strand, within MPMX19_06578 at 51.740 kb on - strand, within MPMX19_06578 at 51.740 kb on - strand, within MPMX19_06578 at 51.740 kb on - strand, within MPMX19_06578 at 51.740 kb on - strand, within MPMX19_06578 at 51.740 kb on - strand, within MPMX19_06578 at 51.740 kb on - strand, within MPMX19_06578 at 51.740 kb on - strand, within MPMX19_06578 at 51.740 kb on - strand, within MPMX19_06578 at 51.754 kb on + strand, within MPMX19_06578 at 51.754 kb on + strand, within MPMX19_06578 at 51.754 kb on + strand, within MPMX19_06578 at 51.754 kb on + strand, within MPMX19_06578 at 51.754 kb on + strand, within MPMX19_06578 at 51.754 kb on + strand, within MPMX19_06578 at 51.754 kb on + strand, within MPMX19_06578 at 51.754 kb on + strand, within MPMX19_06578 at 51.754 kb on + strand, within MPMX19_06578 at 51.754 kb on + strand, within MPMX19_06578 at 51.755 kb on - strand, within MPMX19_06578 at 51.755 kb on - strand, within MPMX19_06578 at 51.755 kb on - strand, within MPMX19_06578 at 51.755 kb on - strand, within MPMX19_06578 at 51.784 kb on + strand, within MPMX19_06578 at 51.784 kb on + strand, within MPMX19_06578 at 51.784 kb on + strand, within MPMX19_06578 at 51.784 kb on + strand, within MPMX19_06578 at 51.785 kb on - strand, within MPMX19_06578 at 51.785 kb on - strand, within MPMX19_06578 at 51.785 kb on - strand, within MPMX19_06578 at 51.785 kb on - strand, within MPMX19_06578 at 52.084 kb on + strand, within MPMX19_06578 at 52.084 kb on + strand, within MPMX19_06578 at 52.085 kb on - strand, within MPMX19_06578 at 52.306 kb on + strand, within MPMX19_06578 at 52.306 kb on + strand, within MPMX19_06578 at 52.306 kb on + strand, within MPMX19_06578 at 52.306 kb on + strand, within MPMX19_06578 at 52.306 kb on + strand, within MPMX19_06578 at 52.306 kb on + strand, within MPMX19_06578 at 52.306 kb on + strand, within MPMX19_06578 at 52.306 kb on + strand, within MPMX19_06578 at 52.306 kb on + strand, within MPMX19_06578 at 52.306 kb on + strand, within MPMX19_06578 at 52.306 kb on + strand, within MPMX19_06578 at 52.306 kb on + strand, within MPMX19_06578 at 52.306 kb on + strand, within MPMX19_06578 at 52.306 kb on + strand, within MPMX19_06578 at 52.306 kb on + strand, within MPMX19_06578 at 52.307 kb on - strand, within MPMX19_06578 at 52.307 kb on - strand, within MPMX19_06578 at 52.307 kb on - strand, within MPMX19_06578 at 52.307 kb on - strand, within MPMX19_06578 at 52.307 kb on - strand, within MPMX19_06578 at 52.307 kb on - strand, within MPMX19_06578 at 52.307 kb on - strand, within MPMX19_06578 at 52.307 kb on - strand, within MPMX19_06578 at 52.373 kb on + strand at 52.373 kb on + strand at 52.374 kb on - strand at 52.473 kb on + strand at 52.474 kb on - strand at 52.474 kb on - strand at 52.474 kb on - strand at 52.854 kb on + strand, within MPMX19_06579 at 52.854 kb on + strand, within MPMX19_06579 at 52.854 kb on + strand, within MPMX19_06579 at 52.855 kb on - strand, within MPMX19_06579 at 52.855 kb on - strand, within MPMX19_06579 at 52.898 kb on + strand, within MPMX19_06579 at 52.898 kb on + strand, within MPMX19_06579 at 52.899 kb on - strand, within MPMX19_06579 at 52.899 kb on - strand, within MPMX19_06579 at 53.147 kb on + strand at 53.147 kb on + strand at 53.147 kb on + strand at 53.147 kb on + strand at 53.147 kb on + strand at 53.147 kb on + strand at 53.147 kb on + strand at 53.148 kb on - strand at 53.148 kb on - strand at 53.148 kb on - strand at 53.148 kb on - strand at 53.148 kb on - strand at 53.148 kb on - strand at 53.216 kb on + strand, within MPMX19_06580 at 53.216 kb on + strand, within MPMX19_06580 at 53.216 kb on + strand, within MPMX19_06580 at 53.216 kb on + strand, within MPMX19_06580 at 53.216 kb on + strand, within MPMX19_06580 at 53.216 kb on + strand, within MPMX19_06580 at 53.217 kb on - strand, within MPMX19_06580 at 53.217 kb on - strand, within MPMX19_06580 at 53.217 kb on - strand, within MPMX19_06580 at 53.217 kb on - strand, within MPMX19_06580 at 53.217 kb on - strand, within MPMX19_06580 at 53.217 kb on - strand, within MPMX19_06580 at 53.217 kb on - strand, within MPMX19_06580 at 53.217 kb on - strand, within MPMX19_06580 at 53.366 kb on + strand, within MPMX19_06580 at 53.366 kb on + strand, within MPMX19_06580 at 53.366 kb on + strand, within MPMX19_06580 at 53.367 kb on - strand, within MPMX19_06580 at 53.367 kb on - strand, within MPMX19_06580 at 53.367 kb on - strand, within MPMX19_06580 at 53.367 kb on - strand, within MPMX19_06580 at 53.367 kb on - strand, within MPMX19_06580 at 53.367 kb on - strand, within MPMX19_06580 at 53.367 kb on - strand, within MPMX19_06580 at 53.367 kb on - strand, within MPMX19_06580 at 53.367 kb on - strand, within MPMX19_06580 at 53.367 kb on - strand, within MPMX19_06580 at 53.828 kb on + strand at 53.828 kb on + strand at 53.828 kb on + strand at 53.828 kb on + strand at 53.828 kb on + strand at 53.828 kb on + strand at 53.828 kb on + strand at 53.828 kb on + strand at 53.828 kb on + strand at 53.828 kb on + strand at 53.828 kb on + strand at 53.828 kb on + strand at 53.828 kb on + strand at 53.828 kb on + strand at 53.828 kb on + strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.884 kb on + strand at 53.884 kb on + strand at 53.884 kb on + strand at 53.884 kb on + strand at 53.884 kb on + strand at 53.884 kb on + strand at 53.884 kb on + strand at 53.884 kb on + strand at 53.884 kb on + strand at 53.884 kb on + strand at 53.884 kb on + strand at 53.884 kb on + strand at 53.884 kb on + strand at 53.884 kb on + strand at 53.884 kb on + strand at 53.884 kb on + strand at 53.884 kb on + strand at 53.884 kb on + strand at 53.884 kb on + strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.885 kb on - strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.975 kb on + strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 53.976 kb on - strand at 54.024 kb on + strand at 54.024 kb on + strand at 54.024 kb on + strand at 54.024 kb on + strand at 54.024 kb on + strand at 54.025 kb on - strand at 54.025 kb on - strand at 54.025 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 51,496 + -0.7 51,496 + -0.4 51,496 + +1.6 51,496 + -2.0 51,496 + -0.5 51,496 + -1.4 51,496 + -0.8 51,496 + -0.8 51,496 + +0.8 51,497 - +0.3 51,497 - +0.2 51,497 - -0.2 51,497 - -0.2 51,497 - +0.1 51,604 + MPMX19_06578 0.19 -0.8 51,604 + MPMX19_06578 0.19 +0.6 51,604 + MPMX19_06578 0.19 +0.2 51,605 - MPMX19_06578 0.19 -0.2 51,605 - MPMX19_06578 0.19 -0.6 51,605 - MPMX19_06578 0.19 +0.3 51,605 - MPMX19_06578 0.19 -0.5 51,605 - MPMX19_06578 0.19 +0.3 51,739 + MPMX19_06578 0.32 -0.8 51,739 + MPMX19_06578 0.32 -1.0 51,739 + MPMX19_06578 0.32 +0.7 51,739 + MPMX19_06578 0.32 -0.6 51,740 - MPMX19_06578 0.32 -0.1 51,740 - MPMX19_06578 0.32 -0.3 51,740 - MPMX19_06578 0.32 -2.5 51,740 - MPMX19_06578 0.32 +0.7 51,740 - MPMX19_06578 0.32 -0.7 51,740 - MPMX19_06578 0.32 +0.8 51,740 - MPMX19_06578 0.32 -0.6 51,740 - MPMX19_06578 0.32 -0.7 51,754 + MPMX19_06578 0.34 -2.9 51,754 + MPMX19_06578 0.34 +1.0 51,754 + MPMX19_06578 0.34 +0.4 51,754 + MPMX19_06578 0.34 -0.8 51,754 + MPMX19_06578 0.34 -0.9 51,754 + MPMX19_06578 0.34 -0.6 51,754 + MPMX19_06578 0.34 -0.8 51,754 + MPMX19_06578 0.34 -0.3 51,754 + MPMX19_06578 0.34 +0.1 51,754 + MPMX19_06578 0.34 +0.3 51,755 - MPMX19_06578 0.34 +0.9 51,755 - MPMX19_06578 0.34 -0.9 51,755 - MPMX19_06578 0.34 -0.7 51,755 - MPMX19_06578 0.34 -0.8 51,784 + MPMX19_06578 0.37 -1.2 51,784 + MPMX19_06578 0.37 -0.6 51,784 + MPMX19_06578 0.37 +0.4 51,784 + MPMX19_06578 0.37 -2.1 51,785 - MPMX19_06578 0.37 -0.5 51,785 - MPMX19_06578 0.37 -0.0 51,785 - MPMX19_06578 0.37 -0.9 51,785 - MPMX19_06578 0.37 -0.2 52,084 + MPMX19_06578 0.66 -0.4 52,084 + MPMX19_06578 0.66 -1.8 52,085 - MPMX19_06578 0.66 -0.3 52,306 + MPMX19_06578 0.88 +1.1 52,306 + MPMX19_06578 0.88 -0.2 52,306 + MPMX19_06578 0.88 -1.0 52,306 + MPMX19_06578 0.88 -1.4 52,306 + MPMX19_06578 0.88 -0.8 52,306 + MPMX19_06578 0.88 -0.2 52,306 + MPMX19_06578 0.88 -0.3 52,306 + MPMX19_06578 0.88 -0.1 52,306 + MPMX19_06578 0.88 +1.1 52,306 + MPMX19_06578 0.88 -0.1 52,306 + MPMX19_06578 0.88 +0.6 52,306 + MPMX19_06578 0.88 -1.2 52,306 + MPMX19_06578 0.88 -0.6 52,306 + MPMX19_06578 0.88 -1.2 52,306 + MPMX19_06578 0.88 -2.9 52,307 - MPMX19_06578 0.88 -0.4 52,307 - MPMX19_06578 0.88 -1.0 52,307 - MPMX19_06578 0.88 +1.6 52,307 - MPMX19_06578 0.88 +1.1 52,307 - MPMX19_06578 0.88 -1.2 52,307 - MPMX19_06578 0.88 +0.1 52,307 - MPMX19_06578 0.88 +0.7 52,307 - MPMX19_06578 0.88 +2.2 52,373 + -0.2 52,373 + -1.9 52,374 - -0.0 52,473 + +0.4 52,474 - -0.5 52,474 - +0.6 52,474 - -0.8 52,854 + MPMX19_06579 0.67 -0.6 52,854 + MPMX19_06579 0.67 -0.3 52,854 + MPMX19_06579 0.67 -1.2 52,855 - MPMX19_06579 0.67 -1.5 52,855 - MPMX19_06579 0.67 +0.1 52,898 + MPMX19_06579 0.73 +0.8 52,898 + MPMX19_06579 0.73 -0.4 52,899 - MPMX19_06579 0.74 -1.2 52,899 - MPMX19_06579 0.74 -2.2 53,147 + -0.4 53,147 + -1.7 53,147 + -1.1 53,147 + -1.4 53,147 + -0.4 53,147 + -1.2 53,147 + +0.0 53,148 - +0.6 53,148 - -0.1 53,148 - -0.8 53,148 - +0.3 53,148 - -0.2 53,148 - -0.8 53,216 + MPMX19_06580 0.18 -1.3 53,216 + MPMX19_06580 0.18 -2.0 53,216 + MPMX19_06580 0.18 +1.0 53,216 + MPMX19_06580 0.18 +0.6 53,216 + MPMX19_06580 0.18 +0.6 53,216 + MPMX19_06580 0.18 -0.9 53,217 - MPMX19_06580 0.18 -0.6 53,217 - MPMX19_06580 0.18 -1.5 53,217 - MPMX19_06580 0.18 -0.9 53,217 - MPMX19_06580 0.18 -0.8 53,217 - MPMX19_06580 0.18 +0.7 53,217 - MPMX19_06580 0.18 -0.4 53,217 - MPMX19_06580 0.18 -0.0 53,217 - MPMX19_06580 0.18 -2.0 53,366 + MPMX19_06580 0.38 -0.2 53,366 + MPMX19_06580 0.38 -0.4 53,366 + MPMX19_06580 0.38 -2.7 53,367 - MPMX19_06580 0.38 +0.3 53,367 - MPMX19_06580 0.38 +0.3 53,367 - MPMX19_06580 0.38 -1.3 53,367 - MPMX19_06580 0.38 -0.6 53,367 - MPMX19_06580 0.38 -0.6 53,367 - MPMX19_06580 0.38 -1.5 53,367 - MPMX19_06580 0.38 -1.4 53,367 - MPMX19_06580 0.38 -0.3 53,367 - MPMX19_06580 0.38 -0.8 53,367 - MPMX19_06580 0.38 -0.1 53,828 + -1.7 53,828 + -2.0 53,828 + -1.4 53,828 + -0.8 53,828 + -2.4 53,828 + +0.2 53,828 + -0.4 53,828 + -1.5 53,828 + -1.5 53,828 + +0.5 53,828 + -0.0 53,828 + -0.9 53,828 + -0.0 53,828 + -0.9 53,828 + -0.0 53,829 - -2.3 53,829 - -0.2 53,829 - -2.5 53,829 - +0.8 53,829 - -0.4 53,829 - -1.5 53,829 - -1.5 53,829 - +0.1 53,829 - -0.3 53,829 - -0.3 53,829 - -1.4 53,829 - -0.3 53,829 - -0.2 53,829 - -1.6 53,829 - -0.4 53,829 - -0.7 53,829 - -1.8 53,829 - +0.8 53,829 - -0.1 53,829 - -0.8 53,884 + -1.6 53,884 + +0.7 53,884 + +0.2 53,884 + +1.3 53,884 + -0.4 53,884 + -0.7 53,884 + -0.2 53,884 + +1.8 53,884 + +1.8 53,884 + -2.4 53,884 + +0.2 53,884 + +0.2 53,884 + -0.0 53,884 + -0.8 53,884 + -1.4 53,884 + +0.3 53,884 + -1.2 53,884 + +0.6 53,884 + -0.9 53,885 - -0.6 53,885 - +0.6 53,885 - -1.4 53,885 - -0.3 53,885 - -1.8 53,885 - -0.4 53,885 - -0.2 53,885 - +0.4 53,885 - -0.5 53,885 - +0.6 53,885 - -0.0 53,885 - -1.5 53,885 - +0.2 53,885 - -0.2 53,885 - -0.8 53,885 - -0.2 53,885 - -1.1 53,885 - -0.1 53,885 - -0.3 53,885 - +0.3 53,885 - -0.3 53,885 - -1.1 53,885 - +0.1 53,975 + -1.0 53,975 + +0.3 53,975 + -2.7 53,975 + -0.6 53,975 + +0.6 53,975 + -1.4 53,975 + -1.0 53,975 + +1.2 53,975 + -0.6 53,975 + -1.8 53,975 + -0.8 53,975 + -2.5 53,975 + +1.6 53,975 + -0.9 53,975 + -1.0 53,975 + -2.0 53,975 + +2.6 53,975 + -0.8 53,975 + +0.0 53,975 + -2.0 53,975 + -0.2 53,975 + -0.2 53,975 + -0.4 53,975 + -0.4 53,975 + +1.7 53,975 + -0.2 53,975 + +0.3 53,975 + -0.3 53,975 + -0.4 53,975 + -0.8 53,975 + -1.2 53,976 - -1.3 53,976 - +0.8 53,976 - -0.0 53,976 - -1.0 53,976 - +1.3 53,976 - +0.2 53,976 - +1.0 53,976 - -0.9 53,976 - -0.8 53,976 - -1.1 53,976 - -1.6 53,976 - -0.3 53,976 - +0.1 53,976 - -0.9 53,976 - -0.0 53,976 - -0.3 53,976 - +0.2 53,976 - +0.3 53,976 - +0.4 53,976 - -0.4 53,976 - -2.2 53,976 - -1.2 53,976 - -1.2 53,976 - -0.0 53,976 - -2.1 53,976 - +0.6 53,976 - -0.4 53,976 - +1.3 54,024 + +0.8 54,024 + -0.2 54,024 + -1.7 54,024 + +0.2 54,024 + +1.6 54,025 - +1.1 54,025 - -0.9 54,025 - -0.8
Or see this region's nucleotide sequence