Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06462

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06461 and MPMX19_06462 are separated by 24 nucleotidesMPMX19_06462 and MPMX19_06463 are separated by 36 nucleotides MPMX19_06461: MPMX19_06461 - Tn3 family transposase ISXc4, at 242,504 to 245,506 _06461 MPMX19_06462: MPMX19_06462 - Hydroxypyruvate reductase, at 245,531 to 246,478 _06462 MPMX19_06463: MPMX19_06463 - Hydroxycarboxylate dehydrogenase B, at 246,515 to 247,579 _06463 Position (kb) 245 246 247Strain fitness (log2 ratio) -2 -1 0 1 2at 244.619 kb on + strand, within MPMX19_06461at 244.620 kb on - strand, within MPMX19_06461at 244.620 kb on - strand, within MPMX19_06461at 244.646 kb on + strand, within MPMX19_06461at 244.646 kb on + strand, within MPMX19_06461at 244.646 kb on + strand, within MPMX19_06461at 244.646 kb on + strand, within MPMX19_06461at 244.646 kb on + strand, within MPMX19_06461at 244.646 kb on + strand, within MPMX19_06461at 244.646 kb on + strand, within MPMX19_06461at 244.647 kb on - strand, within MPMX19_06461at 244.647 kb on - strand, within MPMX19_06461at 244.647 kb on - strand, within MPMX19_06461at 244.647 kb on - strand, within MPMX19_06461at 244.647 kb on - strand, within MPMX19_06461at 244.647 kb on - strand, within MPMX19_06461at 244.649 kb on + strand, within MPMX19_06461at 244.649 kb on + strand, within MPMX19_06461at 244.649 kb on + strand, within MPMX19_06461at 244.649 kb on + strand, within MPMX19_06461at 244.649 kb on + strand, within MPMX19_06461at 244.649 kb on + strand, within MPMX19_06461at 244.649 kb on + strand, within MPMX19_06461at 244.649 kb on + strand, within MPMX19_06461at 244.650 kb on - strand, within MPMX19_06461at 244.650 kb on - strand, within MPMX19_06461at 244.650 kb on - strand, within MPMX19_06461at 244.650 kb on - strand, within MPMX19_06461at 244.650 kb on - strand, within MPMX19_06461at 244.650 kb on - strand, within MPMX19_06461at 244.650 kb on - strand, within MPMX19_06461at 244.650 kb on - strand, within MPMX19_06461at 244.650 kb on - strand, within MPMX19_06461at 244.650 kb on - strand, within MPMX19_06461at 244.793 kb on + strand, within MPMX19_06461at 244.793 kb on + strand, within MPMX19_06461at 244.793 kb on + strand, within MPMX19_06461at 244.793 kb on + strand, within MPMX19_06461at 244.793 kb on + strand, within MPMX19_06461at 244.793 kb on + strand, within MPMX19_06461at 244.793 kb on + strand, within MPMX19_06461at 244.793 kb on + strand, within MPMX19_06461at 244.793 kb on + strand, within MPMX19_06461at 244.793 kb on + strand, within MPMX19_06461at 244.794 kb on - strand, within MPMX19_06461at 244.794 kb on - strand, within MPMX19_06461at 244.794 kb on - strand, within MPMX19_06461at 244.794 kb on - strand, within MPMX19_06461at 244.794 kb on - strand, within MPMX19_06461at 244.794 kb on - strand, within MPMX19_06461at 244.901 kb on + strand, within MPMX19_06461at 244.930 kb on + strand, within MPMX19_06461at 244.930 kb on + strand, within MPMX19_06461at 244.930 kb on + strand, within MPMX19_06461at 244.931 kb on - strand, within MPMX19_06461at 245.105 kb on + strand, within MPMX19_06461at 245.105 kb on + strand, within MPMX19_06461at 245.106 kb on - strand, within MPMX19_06461at 245.106 kb on - strand, within MPMX19_06461at 245.106 kb on - strand, within MPMX19_06461at 245.106 kb on - strand, within MPMX19_06461at 245.106 kb on - strand, within MPMX19_06461at 245.106 kb on - strand, within MPMX19_06461at 245.106 kb on - strand, within MPMX19_06461at 245.117 kb on + strand, within MPMX19_06461at 245.117 kb on + strand, within MPMX19_06461at 245.117 kb on + strand, within MPMX19_06461at 245.117 kb on + strand, within MPMX19_06461at 245.117 kb on + strand, within MPMX19_06461at 245.118 kb on - strand, within MPMX19_06461at 245.118 kb on - strand, within MPMX19_06461at 245.118 kb on - strand, within MPMX19_06461at 245.118 kb on - strand, within MPMX19_06461at 245.118 kb on - strand, within MPMX19_06461at 245.118 kb on - strand, within MPMX19_06461at 245.118 kb on - strand, within MPMX19_06461at 245.118 kb on - strand, within MPMX19_06461at 245.118 kb on - strand, within MPMX19_06461at 245.118 kb on - strand, within MPMX19_06461at 245.118 kb on - strand, within MPMX19_06461at 245.135 kb on + strand, within MPMX19_06461at 245.136 kb on - strand, within MPMX19_06461at 245.235 kb on - strandat 245.290 kb on + strandat 245.290 kb on + strandat 245.291 kb on - strandat 245.291 kb on - strandat 245.309 kb on + strandat 245.309 kb on + strandat 245.309 kb on + strandat 245.309 kb on + strandat 245.309 kb on + strandat 245.309 kb on + strandat 245.309 kb on + strandat 245.309 kb on + strandat 245.310 kb on - strandat 245.310 kb on - strandat 245.310 kb on - strandat 245.498 kb on - strandat 245.498 kb on - strandat 245.511 kb on + strandat 245.511 kb on + strandat 245.511 kb on + strandat 245.511 kb on - strandat 245.515 kb on + strandat 245.515 kb on + strandat 245.515 kb on + strandat 245.515 kb on + strandat 245.515 kb on + strandat 245.515 kb on + strandat 245.515 kb on + strandat 245.516 kb on - strandat 245.516 kb on - strandat 245.516 kb on - strandat 245.516 kb on - strandat 245.516 kb on - strandat 245.516 kb on - strandat 245.516 kb on - strandat 245.516 kb on - strandat 245.536 kb on - strandat 245.679 kb on + strand, within MPMX19_06462at 245.700 kb on + strand, within MPMX19_06462at 245.700 kb on + strand, within MPMX19_06462at 245.701 kb on - strand, within MPMX19_06462at 245.701 kb on - strand, within MPMX19_06462at 245.701 kb on - strand, within MPMX19_06462at 245.701 kb on - strand, within MPMX19_06462at 245.701 kb on - strand, within MPMX19_06462at 245.701 kb on - strand, within MPMX19_06462at 245.841 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.870 kb on + strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.871 kb on - strand, within MPMX19_06462at 245.872 kb on + strand, within MPMX19_06462at 245.872 kb on + strand, within MPMX19_06462at 245.872 kb on + strand, within MPMX19_06462at 245.872 kb on + strand, within MPMX19_06462at 245.872 kb on + strand, within MPMX19_06462at 245.873 kb on - strand, within MPMX19_06462at 245.873 kb on - strand, within MPMX19_06462at 245.873 kb on - strand, within MPMX19_06462at 245.873 kb on - strand, within MPMX19_06462at 246.008 kb on + strand, within MPMX19_06462at 246.008 kb on + strand, within MPMX19_06462at 246.009 kb on - strand, within MPMX19_06462at 246.009 kb on - strand, within MPMX19_06462at 246.009 kb on - strand, within MPMX19_06462at 246.611 kb on + strandat 246.611 kb on + strandat 246.611 kb on + strandat 246.611 kb on + strandat 246.611 kb on + strandat 246.611 kb on + strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.612 kb on - strandat 246.871 kb on - strand, within MPMX19_06463at 246.877 kb on + strand, within MPMX19_06463at 246.877 kb on + strand, within MPMX19_06463at 246.877 kb on + strand, within MPMX19_06463at 246.878 kb on - strand, within MPMX19_06463at 246.878 kb on - strand, within MPMX19_06463at 246.923 kb on + strand, within MPMX19_06463at 246.923 kb on + strand, within MPMX19_06463at 246.923 kb on + strand, within MPMX19_06463at 246.923 kb on + strand, within MPMX19_06463at 247.059 kb on + strand, within MPMX19_06463at 247.059 kb on + strand, within MPMX19_06463at 247.059 kb on + strand, within MPMX19_06463at 247.060 kb on - strand, within MPMX19_06463at 247.060 kb on - strand, within MPMX19_06463at 247.204 kb on - strand, within MPMX19_06463at 247.204 kb on - strand, within MPMX19_06463at 247.204 kb on - strand, within MPMX19_06463at 247.204 kb on - strand, within MPMX19_06463at 247.222 kb on + strand, within MPMX19_06463at 247.435 kb on + strand, within MPMX19_06463at 247.435 kb on + strand, within MPMX19_06463at 247.435 kb on + strand, within MPMX19_06463at 247.435 kb on + strand, within MPMX19_06463at 247.435 kb on + strand, within MPMX19_06463at 247.436 kb on - strand, within MPMX19_06463at 247.436 kb on - strand, within MPMX19_06463at 247.436 kb on - strand, within MPMX19_06463at 247.436 kb on - strand, within MPMX19_06463at 247.436 kb on - strand, within MPMX19_06463

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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244,619 + MPMX19_06461 0.70 +1.0
244,620 - MPMX19_06461 0.70 -2.1
244,620 - MPMX19_06461 0.70 -1.6
244,646 + MPMX19_06461 0.71 +1.1
244,646 + MPMX19_06461 0.71 -1.4
244,646 + MPMX19_06461 0.71 +0.6
244,646 + MPMX19_06461 0.71 +0.1
244,646 + MPMX19_06461 0.71 -0.4
244,646 + MPMX19_06461 0.71 -0.6
244,646 + MPMX19_06461 0.71 +0.7
244,647 - MPMX19_06461 0.71 +0.4
244,647 - MPMX19_06461 0.71 -0.6
244,647 - MPMX19_06461 0.71 -1.3
244,647 - MPMX19_06461 0.71 +0.6
244,647 - MPMX19_06461 0.71 -0.7
244,647 - MPMX19_06461 0.71 -1.1
244,649 + MPMX19_06461 0.71 +1.7
244,649 + MPMX19_06461 0.71 -0.5
244,649 + MPMX19_06461 0.71 -0.9
244,649 + MPMX19_06461 0.71 +0.7
244,649 + MPMX19_06461 0.71 +0.9
244,649 + MPMX19_06461 0.71 +1.0
244,649 + MPMX19_06461 0.71 +0.7
244,649 + MPMX19_06461 0.71 +0.4
244,650 - MPMX19_06461 0.71 +0.1
244,650 - MPMX19_06461 0.71 +0.2
244,650 - MPMX19_06461 0.71 +0.5
244,650 - MPMX19_06461 0.71 +1.5
244,650 - MPMX19_06461 0.71 +0.5
244,650 - MPMX19_06461 0.71 -0.5
244,650 - MPMX19_06461 0.71 +1.2
244,650 - MPMX19_06461 0.71 -2.5
244,650 - MPMX19_06461 0.71 -0.0
244,650 - MPMX19_06461 0.71 -0.3
244,793 + MPMX19_06461 0.76 +0.4
244,793 + MPMX19_06461 0.76 +0.4
244,793 + MPMX19_06461 0.76 -1.3
244,793 + MPMX19_06461 0.76 +0.1
244,793 + MPMX19_06461 0.76 +1.6
244,793 + MPMX19_06461 0.76 -0.9
244,793 + MPMX19_06461 0.76 +1.5
244,793 + MPMX19_06461 0.76 -2.2
244,793 + MPMX19_06461 0.76 +1.0
244,793 + MPMX19_06461 0.76 +0.0
244,794 - MPMX19_06461 0.76 -1.0
244,794 - MPMX19_06461 0.76 +0.2
244,794 - MPMX19_06461 0.76 -1.0
244,794 - MPMX19_06461 0.76 +1.2
244,794 - MPMX19_06461 0.76 -0.8
244,794 - MPMX19_06461 0.76 -0.3
244,901 + MPMX19_06461 0.80 -1.3
244,930 + MPMX19_06461 0.81 +0.7
244,930 + MPMX19_06461 0.81 +1.7
244,930 + MPMX19_06461 0.81 +0.9
244,931 - MPMX19_06461 0.81 -2.3
245,105 + MPMX19_06461 0.87 +0.1
245,105 + MPMX19_06461 0.87 -0.7
245,106 - MPMX19_06461 0.87 -0.6
245,106 - MPMX19_06461 0.87 -1.5
245,106 - MPMX19_06461 0.87 +0.0
245,106 - MPMX19_06461 0.87 -0.4
245,106 - MPMX19_06461 0.87 -0.3
245,106 - MPMX19_06461 0.87 -0.9
245,106 - MPMX19_06461 0.87 -0.3
245,117 + MPMX19_06461 0.87 -0.3
245,117 + MPMX19_06461 0.87 -1.1
245,117 + MPMX19_06461 0.87 -0.7
245,117 + MPMX19_06461 0.87 +0.2
245,117 + MPMX19_06461 0.87 -1.8
245,118 - MPMX19_06461 0.87 -1.1
245,118 - MPMX19_06461 0.87 +0.2
245,118 - MPMX19_06461 0.87 -0.1
245,118 - MPMX19_06461 0.87 +0.7
245,118 - MPMX19_06461 0.87 +0.4
245,118 - MPMX19_06461 0.87 -0.9
245,118 - MPMX19_06461 0.87 -1.5
245,118 - MPMX19_06461 0.87 +0.1
245,118 - MPMX19_06461 0.87 +0.0
245,118 - MPMX19_06461 0.87 -0.1
245,118 - MPMX19_06461 0.87 +0.5
245,135 + MPMX19_06461 0.88 -0.5
245,136 - MPMX19_06461 0.88 -1.2
245,235 - -0.1
245,290 + -1.1
245,290 + -0.9
245,291 - +1.1
245,291 - -0.9
245,309 + -1.0
245,309 + +0.8
245,309 + -0.2
245,309 + -1.1
245,309 + -0.2
245,309 + +0.2
245,309 + -0.0
245,309 + +0.0
245,310 - +0.2
245,310 - +0.8
245,310 - +0.3
245,498 - -1.0
245,498 - -0.1
245,511 + -0.1
245,511 + +0.4
245,511 + -0.4
245,511 - -1.2
245,515 + +2.1
245,515 + +0.5
245,515 + -1.1
245,515 + -0.2
245,515 + -0.6
245,515 + +0.5
245,515 + -0.9
245,516 - -0.2
245,516 - -0.4
245,516 - +1.0
245,516 - -0.6
245,516 - +1.7
245,516 - +2.4
245,516 - -1.5
245,516 - +0.5
245,536 - -0.7
245,679 + MPMX19_06462 0.16 +0.0
245,700 + MPMX19_06462 0.18 -0.3
245,700 + MPMX19_06462 0.18 +0.1
245,701 - MPMX19_06462 0.18 -0.3
245,701 - MPMX19_06462 0.18 -0.9
245,701 - MPMX19_06462 0.18 +0.5
245,701 - MPMX19_06462 0.18 +0.9
245,701 - MPMX19_06462 0.18 +0.1
245,701 - MPMX19_06462 0.18 -0.5
245,841 + MPMX19_06462 0.33 +0.4
245,870 + MPMX19_06462 0.36 -1.9
245,870 + MPMX19_06462 0.36 -0.9
245,870 + MPMX19_06462 0.36 -0.1
245,870 + MPMX19_06462 0.36 -0.0
245,870 + MPMX19_06462 0.36 -0.5
245,870 + MPMX19_06462 0.36 -0.4
245,870 + MPMX19_06462 0.36 +0.2
245,870 + MPMX19_06462 0.36 -0.7
245,870 + MPMX19_06462 0.36 +0.6
245,870 + MPMX19_06462 0.36 -0.6
245,870 + MPMX19_06462 0.36 +1.4
245,870 + MPMX19_06462 0.36 -0.1
245,870 + MPMX19_06462 0.36 -1.3
245,870 + MPMX19_06462 0.36 -0.3
245,870 + MPMX19_06462 0.36 -0.2
245,871 - MPMX19_06462 0.36 -0.4
245,871 - MPMX19_06462 0.36 -0.9
245,871 - MPMX19_06462 0.36 -0.8
245,871 - MPMX19_06462 0.36 -0.6
245,871 - MPMX19_06462 0.36 -0.9
245,871 - MPMX19_06462 0.36 -0.0
245,871 - MPMX19_06462 0.36 +0.7
245,871 - MPMX19_06462 0.36 -0.6
245,871 - MPMX19_06462 0.36 +1.3
245,871 - MPMX19_06462 0.36 -1.5
245,871 - MPMX19_06462 0.36 -0.9
245,871 - MPMX19_06462 0.36 -0.5
245,871 - MPMX19_06462 0.36 -0.2
245,871 - MPMX19_06462 0.36 +1.1
245,872 + MPMX19_06462 0.36 -2.5
245,872 + MPMX19_06462 0.36 -0.0
245,872 + MPMX19_06462 0.36 -0.3
245,872 + MPMX19_06462 0.36 +0.7
245,872 + MPMX19_06462 0.36 -0.7
245,873 - MPMX19_06462 0.36 -0.7
245,873 - MPMX19_06462 0.36 -0.0
245,873 - MPMX19_06462 0.36 -0.8
245,873 - MPMX19_06462 0.36 -0.3
246,008 + MPMX19_06462 0.50 +0.6
246,008 + MPMX19_06462 0.50 -0.4
246,009 - MPMX19_06462 0.50 +0.3
246,009 - MPMX19_06462 0.50 -1.7
246,009 - MPMX19_06462 0.50 +0.3
246,611 + -0.1
246,611 + -0.2
246,611 + -0.3
246,611 + -1.5
246,611 + +0.3
246,611 + +0.4
246,612 - -2.5
246,612 - -0.7
246,612 - +0.2
246,612 - -0.6
246,612 - +0.1
246,612 - +0.6
246,612 - +0.1
246,612 - -1.6
246,871 - MPMX19_06463 0.33 +0.7
246,877 + MPMX19_06463 0.34 +0.2
246,877 + MPMX19_06463 0.34 +0.9
246,877 + MPMX19_06463 0.34 -1.6
246,878 - MPMX19_06463 0.34 -0.2
246,878 - MPMX19_06463 0.34 -0.3
246,923 + MPMX19_06463 0.38 +1.3
246,923 + MPMX19_06463 0.38 -0.5
246,923 + MPMX19_06463 0.38 -1.1
246,923 + MPMX19_06463 0.38 -1.3
247,059 + MPMX19_06463 0.51 -1.0
247,059 + MPMX19_06463 0.51 -0.9
247,059 + MPMX19_06463 0.51 +0.8
247,060 - MPMX19_06463 0.51 -0.7
247,060 - MPMX19_06463 0.51 -0.3
247,204 - MPMX19_06463 0.65 -0.0
247,204 - MPMX19_06463 0.65 -0.1
247,204 - MPMX19_06463 0.65 -0.5
247,204 - MPMX19_06463 0.65 +1.5
247,222 + MPMX19_06463 0.66 +1.2
247,435 + MPMX19_06463 0.86 -0.5
247,435 + MPMX19_06463 0.86 -1.1
247,435 + MPMX19_06463 0.86 -1.0
247,435 + MPMX19_06463 0.86 -0.6
247,435 + MPMX19_06463 0.86 +0.5
247,436 - MPMX19_06463 0.86 +0.7
247,436 - MPMX19_06463 0.86 +0.4
247,436 - MPMX19_06463 0.86 -0.3
247,436 - MPMX19_06463 0.86 +0.7
247,436 - MPMX19_06463 0.86 -0.3

Or see this region's nucleotide sequence