Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05401 and MPMX19_05402 are separated by 91 nucleotides MPMX19_05402 and MPMX19_05403 are separated by 121 nucleotides MPMX19_05403 and MPMX19_05404 overlap by 4 nucleotides
MPMX19_05401: MPMX19_05401 - 2-methylisocitrate lyase, at 81,725 to 82,570
_05401
MPMX19_05402: MPMX19_05402 - hypothetical protein, at 82,662 to 83,129
_05402
MPMX19_05403: MPMX19_05403 - hypothetical protein, at 83,251 to 84,000
_05403
MPMX19_05404: MPMX19_05404 - UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, at 83,997 to 85,154
_05404
Position (kb) 83
84
85 Strain fitness (log2 ratio) -2
-1
0
1 at 82.608 kb on - strand at 82.699 kb on + strand at 82.699 kb on + strand at 82.699 kb on + strand at 82.700 kb on - strand at 82.700 kb on - strand at 82.700 kb on - strand at 82.700 kb on - strand at 82.700 kb on - strand at 82.700 kb on - strand at 82.700 kb on - strand at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.837 kb on + strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 82.838 kb on - strand, within MPMX19_05402 at 83.247 kb on - strand at 83.247 kb on - strand at 83.247 kb on - strand at 83.980 kb on + strand at 83.980 kb on + strand at 83.980 kb on + strand at 83.981 kb on - strand at 83.981 kb on - strand at 84.274 kb on + strand, within MPMX19_05404 at 84.274 kb on + strand, within MPMX19_05404 at 84.274 kb on + strand, within MPMX19_05404 at 84.275 kb on - strand, within MPMX19_05404 at 84.275 kb on - strand, within MPMX19_05404 at 84.586 kb on + strand, within MPMX19_05404 at 84.586 kb on + strand, within MPMX19_05404 at 84.586 kb on + strand, within MPMX19_05404 at 84.586 kb on + strand, within MPMX19_05404 at 84.586 kb on + strand, within MPMX19_05404 at 84.586 kb on + strand, within MPMX19_05404 at 84.587 kb on - strand, within MPMX19_05404 at 84.587 kb on - strand, within MPMX19_05404 at 84.676 kb on + strand, within MPMX19_05404 at 84.676 kb on + strand, within MPMX19_05404 at 84.676 kb on + strand, within MPMX19_05404 at 84.676 kb on + strand, within MPMX19_05404 at 84.676 kb on + strand, within MPMX19_05404 at 84.676 kb on + strand, within MPMX19_05404 at 84.677 kb on - strand, within MPMX19_05404 at 84.677 kb on - strand, within MPMX19_05404 at 84.677 kb on - strand, within MPMX19_05404 at 84.677 kb on - strand, within MPMX19_05404 at 84.677 kb on - strand, within MPMX19_05404
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 82,608 - -0.8 82,699 + +0.1 82,699 + -0.3 82,699 + -1.7 82,700 - -0.6 82,700 - -1.1 82,700 - -0.2 82,700 - +0.8 82,700 - -0.3 82,700 - +1.4 82,700 - -0.7 82,837 + MPMX19_05402 0.37 -1.0 82,837 + MPMX19_05402 0.37 -1.2 82,837 + MPMX19_05402 0.37 +1.1 82,837 + MPMX19_05402 0.37 +1.1 82,837 + MPMX19_05402 0.37 -0.5 82,837 + MPMX19_05402 0.37 +0.4 82,837 + MPMX19_05402 0.37 +0.2 82,837 + MPMX19_05402 0.37 -0.6 82,837 + MPMX19_05402 0.37 -1.0 82,837 + MPMX19_05402 0.37 +0.2 82,837 + MPMX19_05402 0.37 -0.8 82,838 - MPMX19_05402 0.38 -2.1 82,838 - MPMX19_05402 0.38 -0.9 82,838 - MPMX19_05402 0.38 -0.4 82,838 - MPMX19_05402 0.38 +1.0 82,838 - MPMX19_05402 0.38 +0.9 82,838 - MPMX19_05402 0.38 -1.2 82,838 - MPMX19_05402 0.38 -1.7 82,838 - MPMX19_05402 0.38 +0.1 82,838 - MPMX19_05402 0.38 -1.8 82,838 - MPMX19_05402 0.38 -0.7 83,247 - +0.2 83,247 - -0.3 83,247 - -1.0 83,980 + -1.1 83,980 + -0.5 83,980 + +0.2 83,981 - -0.2 83,981 - -2.2 84,274 + MPMX19_05404 0.24 -1.3 84,274 + MPMX19_05404 0.24 -0.1 84,274 + MPMX19_05404 0.24 +0.1 84,275 - MPMX19_05404 0.24 -1.7 84,275 - MPMX19_05404 0.24 -0.1 84,586 + MPMX19_05404 0.51 +0.3 84,586 + MPMX19_05404 0.51 -0.7 84,586 + MPMX19_05404 0.51 -1.6 84,586 + MPMX19_05404 0.51 -1.6 84,586 + MPMX19_05404 0.51 -0.5 84,586 + MPMX19_05404 0.51 -2.5 84,587 - MPMX19_05404 0.51 +0.4 84,587 - MPMX19_05404 0.51 +0.2 84,676 + MPMX19_05404 0.59 +0.1 84,676 + MPMX19_05404 0.59 +0.4 84,676 + MPMX19_05404 0.59 -0.4 84,676 + MPMX19_05404 0.59 -1.1 84,676 + MPMX19_05404 0.59 -0.2 84,676 + MPMX19_05404 0.59 -1.1 84,677 - MPMX19_05404 0.59 +1.2 84,677 - MPMX19_05404 0.59 -0.6 84,677 - MPMX19_05404 0.59 -1.5 84,677 - MPMX19_05404 0.59 -0.5 84,677 - MPMX19_05404 0.59 -0.2
Or see this region's nucleotide sequence