Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05314

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05313 and MPMX19_05314 are separated by 64 nucleotidesMPMX19_05314 and MPMX19_05315 are separated by 113 nucleotides MPMX19_05313: MPMX19_05313 - 4,4'-diapolycopene aldehyde oxidase, at 851,060 to 852,355 _05313 MPMX19_05314: MPMX19_05314 - hypothetical protein, at 852,420 to 852,881 _05314 MPMX19_05315: MPMX19_05315 - Long-chain-fatty-acid--CoA ligase, at 852,995 to 854,572 _05315 Position (kb) 852 853Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 852.507 kb on + strand, within MPMX19_05314at 852.507 kb on + strand, within MPMX19_05314at 852.508 kb on - strand, within MPMX19_05314at 852.508 kb on - strand, within MPMX19_05314at 852.508 kb on - strand, within MPMX19_05314at 852.771 kb on + strand, within MPMX19_05314at 852.771 kb on + strand, within MPMX19_05314at 852.896 kb on + strandat 852.897 kb on - strandat 852.974 kb on + strandat 852.974 kb on + strandat 852.974 kb on + strandat 852.975 kb on - strandat 852.975 kb on - strandat 852.975 kb on - strandat 852.975 kb on - strandat 852.975 kb on - strandat 852.975 kb on - strandat 852.975 kb on - strandat 852.976 kb on + strandat 852.976 kb on + strandat 852.976 kb on + strandat 852.976 kb on + strandat 852.976 kb on + strandat 852.976 kb on + strandat 852.976 kb on + strandat 852.976 kb on + strandat 852.976 kb on + strandat 852.976 kb on + strandat 852.977 kb on - strandat 852.977 kb on - strandat 852.977 kb on - strandat 852.977 kb on - strandat 852.977 kb on - strandat 852.977 kb on - strandat 852.977 kb on - strandat 852.977 kb on - strandat 852.977 kb on - strandat 852.977 kb on - strandat 853.014 kb on + strandat 853.014 kb on + strandat 853.014 kb on + strandat 853.015 kb on - strandat 853.015 kb on - strandat 853.015 kb on - strandat 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.251 kb on + strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.252 kb on - strand, within MPMX19_05315at 853.335 kb on + strand, within MPMX19_05315at 853.335 kb on + strand, within MPMX19_05315at 853.335 kb on + strand, within MPMX19_05315at 853.336 kb on - strand, within MPMX19_05315at 853.336 kb on - strand, within MPMX19_05315at 853.353 kb on + strand, within MPMX19_05315at 853.354 kb on - strand, within MPMX19_05315at 853.354 kb on - strand, within MPMX19_05315at 853.608 kb on + strand, within MPMX19_05315at 853.608 kb on + strand, within MPMX19_05315at 853.609 kb on - strand, within MPMX19_05315at 853.609 kb on - strand, within MPMX19_05315at 853.686 kb on + strand, within MPMX19_05315at 853.687 kb on - strand, within MPMX19_05315at 853.687 kb on - strand, within MPMX19_05315at 853.687 kb on - strand, within MPMX19_05315at 853.689 kb on + strand, within MPMX19_05315at 853.689 kb on + strand, within MPMX19_05315at 853.689 kb on + strand, within MPMX19_05315at 853.689 kb on + strand, within MPMX19_05315at 853.689 kb on + strand, within MPMX19_05315at 853.689 kb on + strand, within MPMX19_05315at 853.689 kb on + strand, within MPMX19_05315at 853.690 kb on - strand, within MPMX19_05315at 853.690 kb on - strand, within MPMX19_05315at 853.690 kb on - strand, within MPMX19_05315at 853.690 kb on - strand, within MPMX19_05315at 853.690 kb on - strand, within MPMX19_05315at 853.690 kb on - strand, within MPMX19_05315at 853.690 kb on - strand, within MPMX19_05315at 853.690 kb on - strand, within MPMX19_05315at 853.690 kb on - strand, within MPMX19_05315

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
remove
852,507 + MPMX19_05314 0.19 -1.4
852,507 + MPMX19_05314 0.19 -0.6
852,508 - MPMX19_05314 0.19 -0.5
852,508 - MPMX19_05314 0.19 -1.4
852,508 - MPMX19_05314 0.19 -0.4
852,771 + MPMX19_05314 0.76 -1.1
852,771 + MPMX19_05314 0.76 +0.0
852,896 + +0.7
852,897 - -0.4
852,974 + -1.0
852,974 + -0.5
852,974 + -0.7
852,975 - -2.1
852,975 - -1.7
852,975 - -0.1
852,975 - +0.3
852,975 - -0.0
852,975 - +1.1
852,975 - -0.5
852,976 + -1.3
852,976 + +0.9
852,976 + -0.7
852,976 + +0.5
852,976 + +0.2
852,976 + -0.1
852,976 + +0.8
852,976 + -1.8
852,976 + -0.8
852,976 + -0.8
852,977 - -0.2
852,977 - +0.1
852,977 - -2.4
852,977 - +0.5
852,977 - +0.9
852,977 - -0.9
852,977 - -0.1
852,977 - -0.6
852,977 - -1.2
852,977 - -1.2
853,014 + +0.1
853,014 + -0.8
853,014 + +0.6
853,015 - -0.0
853,015 - -1.8
853,015 - -0.7
853,251 + MPMX19_05315 0.16 +2.2
853,251 + MPMX19_05315 0.16 +0.1
853,251 + MPMX19_05315 0.16 -0.1
853,251 + MPMX19_05315 0.16 -2.3
853,251 + MPMX19_05315 0.16 +0.9
853,251 + MPMX19_05315 0.16 -0.1
853,251 + MPMX19_05315 0.16 +0.4
853,251 + MPMX19_05315 0.16 +1.1
853,251 + MPMX19_05315 0.16 -0.2
853,251 + MPMX19_05315 0.16 +0.6
853,251 + MPMX19_05315 0.16 +0.3
853,251 + MPMX19_05315 0.16 -0.9
853,252 - MPMX19_05315 0.16 +0.3
853,252 - MPMX19_05315 0.16 -0.7
853,252 - MPMX19_05315 0.16 -0.8
853,252 - MPMX19_05315 0.16 -0.6
853,252 - MPMX19_05315 0.16 +0.1
853,252 - MPMX19_05315 0.16 -0.1
853,252 - MPMX19_05315 0.16 +0.6
853,252 - MPMX19_05315 0.16 -1.3
853,252 - MPMX19_05315 0.16 +0.1
853,252 - MPMX19_05315 0.16 -0.6
853,252 - MPMX19_05315 0.16 -2.5
853,252 - MPMX19_05315 0.16 -0.2
853,335 + MPMX19_05315 0.22 +0.1
853,335 + MPMX19_05315 0.22 -2.0
853,335 + MPMX19_05315 0.22 -0.5
853,336 - MPMX19_05315 0.22 +0.2
853,336 - MPMX19_05315 0.22 +0.1
853,353 + MPMX19_05315 0.23 +1.5
853,354 - MPMX19_05315 0.23 -1.9
853,354 - MPMX19_05315 0.23 -3.0
853,608 + MPMX19_05315 0.39 -0.4
853,608 + MPMX19_05315 0.39 -0.7
853,609 - MPMX19_05315 0.39 +0.4
853,609 - MPMX19_05315 0.39 -0.4
853,686 + MPMX19_05315 0.44 -1.0
853,687 - MPMX19_05315 0.44 -1.6
853,687 - MPMX19_05315 0.44 +0.0
853,687 - MPMX19_05315 0.44 +0.0
853,689 + MPMX19_05315 0.44 -0.4
853,689 + MPMX19_05315 0.44 +0.0
853,689 + MPMX19_05315 0.44 -2.9
853,689 + MPMX19_05315 0.44 -0.1
853,689 + MPMX19_05315 0.44 +0.7
853,689 + MPMX19_05315 0.44 +1.5
853,689 + MPMX19_05315 0.44 -0.5
853,690 - MPMX19_05315 0.44 -1.1
853,690 - MPMX19_05315 0.44 +0.4
853,690 - MPMX19_05315 0.44 -1.3
853,690 - MPMX19_05315 0.44 -0.1
853,690 - MPMX19_05315 0.44 +0.9
853,690 - MPMX19_05315 0.44 -1.6
853,690 - MPMX19_05315 0.44 -1.8
853,690 - MPMX19_05315 0.44 -2.3
853,690 - MPMX19_05315 0.44 -1.0

Or see this region's nucleotide sequence