Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04628 and MPMX19_04629 are separated by 41 nucleotides MPMX19_04629 and MPMX19_04630 overlap by 4 nucleotides
MPMX19_04628: MPMX19_04628 - hypothetical protein, at 1,533 to 2,918
_04628
MPMX19_04629: MPMX19_04629 - D-inositol-3-phosphate glycosyltransferase, at 2,960 to 4,807
_04629
MPMX19_04630: MPMX19_04630 - hypothetical protein, at 4,804 to 6,984
_04630
Position (kb) 2
3
4
5 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 2.046 kb on + strand, within MPMX19_04628 at 2.046 kb on + strand, within MPMX19_04628 at 2.046 kb on + strand, within MPMX19_04628 at 2.047 kb on - strand, within MPMX19_04628 at 2.047 kb on - strand, within MPMX19_04628 at 2.143 kb on + strand, within MPMX19_04628 at 2.143 kb on + strand, within MPMX19_04628 at 2.143 kb on + strand, within MPMX19_04628 at 2.144 kb on - strand, within MPMX19_04628 at 2.144 kb on - strand, within MPMX19_04628 at 2.205 kb on + strand, within MPMX19_04628 at 2.206 kb on - strand, within MPMX19_04628 at 2.206 kb on - strand, within MPMX19_04628 at 2.307 kb on + strand, within MPMX19_04628 at 2.307 kb on + strand, within MPMX19_04628 at 2.307 kb on + strand, within MPMX19_04628 at 2.307 kb on + strand, within MPMX19_04628 at 2.308 kb on - strand, within MPMX19_04628 at 2.308 kb on - strand, within MPMX19_04628 at 2.308 kb on - strand, within MPMX19_04628 at 2.308 kb on - strand, within MPMX19_04628 at 2.505 kb on + strand, within MPMX19_04628 at 2.505 kb on + strand, within MPMX19_04628 at 2.505 kb on + strand, within MPMX19_04628 at 2.505 kb on + strand, within MPMX19_04628 at 2.505 kb on + strand, within MPMX19_04628 at 2.505 kb on + strand, within MPMX19_04628 at 2.505 kb on + strand, within MPMX19_04628 at 2.505 kb on + strand, within MPMX19_04628 at 2.505 kb on + strand, within MPMX19_04628 at 2.506 kb on - strand, within MPMX19_04628 at 2.506 kb on - strand, within MPMX19_04628 at 2.506 kb on - strand, within MPMX19_04628 at 2.568 kb on + strand, within MPMX19_04628 at 2.601 kb on + strand, within MPMX19_04628 at 2.601 kb on + strand, within MPMX19_04628 at 2.602 kb on - strand, within MPMX19_04628 at 2.731 kb on - strand, within MPMX19_04628 at 2.731 kb on - strand, within MPMX19_04628 at 2.763 kb on + strand, within MPMX19_04628 at 2.763 kb on + strand, within MPMX19_04628 at 2.763 kb on + strand, within MPMX19_04628 at 2.764 kb on - strand, within MPMX19_04628 at 2.879 kb on + strand at 2.879 kb on + strand at 2.880 kb on - strand at 2.880 kb on - strand at 2.880 kb on - strand at 2.880 kb on - strand at 2.940 kb on + strand at 2.941 kb on - strand at 2.987 kb on + strand at 3.064 kb on + strand at 3.065 kb on - strand at 3.422 kb on + strand, within MPMX19_04629 at 3.422 kb on + strand, within MPMX19_04629 at 3.422 kb on + strand, within MPMX19_04629 at 3.422 kb on + strand, within MPMX19_04629 at 3.422 kb on + strand, within MPMX19_04629 at 3.422 kb on + strand, within MPMX19_04629 at 3.422 kb on + strand, within MPMX19_04629 at 3.422 kb on + strand, within MPMX19_04629 at 3.423 kb on - strand, within MPMX19_04629 at 3.461 kb on + strand, within MPMX19_04629 at 3.461 kb on + strand, within MPMX19_04629 at 3.461 kb on + strand, within MPMX19_04629 at 3.462 kb on - strand, within MPMX19_04629 at 4.139 kb on + strand, within MPMX19_04629 at 4.139 kb on + strand, within MPMX19_04629 at 4.139 kb on + strand, within MPMX19_04629 at 4.139 kb on + strand, within MPMX19_04629 at 4.139 kb on + strand, within MPMX19_04629 at 4.139 kb on + strand, within MPMX19_04629 at 4.139 kb on + strand, within MPMX19_04629 at 4.139 kb on + strand, within MPMX19_04629 at 4.139 kb on + strand, within MPMX19_04629 at 4.139 kb on + strand, within MPMX19_04629 at 4.139 kb on + strand, within MPMX19_04629 at 4.139 kb on + strand, within MPMX19_04629 at 4.139 kb on + strand, within MPMX19_04629 at 4.139 kb on + strand, within MPMX19_04629 at 4.139 kb on + strand, within MPMX19_04629 at 4.140 kb on - strand, within MPMX19_04629 at 4.140 kb on - strand, within MPMX19_04629 at 4.140 kb on - strand, within MPMX19_04629 at 4.140 kb on - strand, within MPMX19_04629 at 4.140 kb on - strand, within MPMX19_04629 at 4.140 kb on - strand, within MPMX19_04629 at 4.193 kb on + strand, within MPMX19_04629 at 4.193 kb on + strand, within MPMX19_04629 at 4.193 kb on + strand, within MPMX19_04629 at 4.193 kb on + strand, within MPMX19_04629 at 4.193 kb on + strand, within MPMX19_04629 at 4.194 kb on - strand, within MPMX19_04629 at 4.194 kb on - strand, within MPMX19_04629 at 4.194 kb on - strand, within MPMX19_04629 at 4.194 kb on - strand, within MPMX19_04629 at 4.194 kb on - strand, within MPMX19_04629 at 4.202 kb on + strand, within MPMX19_04629 at 4.202 kb on + strand, within MPMX19_04629 at 4.202 kb on + strand, within MPMX19_04629 at 4.202 kb on + strand, within MPMX19_04629 at 4.202 kb on + strand, within MPMX19_04629 at 4.202 kb on + strand, within MPMX19_04629 at 4.202 kb on + strand, within MPMX19_04629 at 4.202 kb on + strand, within MPMX19_04629 at 4.202 kb on + strand, within MPMX19_04629 at 4.202 kb on + strand, within MPMX19_04629 at 4.202 kb on + strand, within MPMX19_04629 at 4.202 kb on + strand, within MPMX19_04629 at 4.202 kb on + strand, within MPMX19_04629 at 4.202 kb on + strand, within MPMX19_04629 at 4.203 kb on - strand, within MPMX19_04629 at 4.203 kb on - strand, within MPMX19_04629 at 4.203 kb on - strand, within MPMX19_04629 at 4.203 kb on - strand, within MPMX19_04629 at 4.203 kb on - strand, within MPMX19_04629 at 4.203 kb on - strand, within MPMX19_04629 at 4.203 kb on - strand, within MPMX19_04629 at 4.203 kb on - strand, within MPMX19_04629 at 4.280 kb on + strand, within MPMX19_04629 at 4.571 kb on + strand, within MPMX19_04629 at 4.571 kb on + strand, within MPMX19_04629 at 4.571 kb on + strand, within MPMX19_04629 at 4.572 kb on - strand, within MPMX19_04629 at 4.572 kb on - strand, within MPMX19_04629 at 4.572 kb on - strand, within MPMX19_04629 at 4.580 kb on + strand, within MPMX19_04629 at 4.580 kb on + strand, within MPMX19_04629 at 4.580 kb on + strand, within MPMX19_04629 at 4.580 kb on + strand, within MPMX19_04629 at 4.580 kb on + strand, within MPMX19_04629 at 4.584 kb on - strand, within MPMX19_04629 at 4.584 kb on - strand, within MPMX19_04629 at 4.584 kb on - strand, within MPMX19_04629 at 4.930 kb on + strand at 4.930 kb on + strand at 4.930 kb on + strand at 4.930 kb on + strand at 4.930 kb on + strand at 4.931 kb on - strand at 4.931 kb on - strand at 4.931 kb on - strand at 4.931 kb on - strand at 4.931 kb on - strand at 4.931 kb on - strand at 4.933 kb on + strand at 4.933 kb on + strand at 4.933 kb on + strand at 4.934 kb on - strand at 4.934 kb on - strand at 4.934 kb on - strand at 4.934 kb on - strand at 4.934 kb on - strand at 4.934 kb on - strand at 5.161 kb on + strand, within MPMX19_04630 at 5.161 kb on + strand, within MPMX19_04630 at 5.161 kb on + strand, within MPMX19_04630 at 5.161 kb on + strand, within MPMX19_04630 at 5.161 kb on + strand, within MPMX19_04630 at 5.161 kb on + strand, within MPMX19_04630 at 5.162 kb on - strand, within MPMX19_04630 at 5.162 kb on - strand, within MPMX19_04630 at 5.162 kb on - strand, within MPMX19_04630 at 5.162 kb on - strand, within MPMX19_04630 at 5.162 kb on - strand, within MPMX19_04630 at 5.162 kb on - strand, within MPMX19_04630 at 5.162 kb on - strand, within MPMX19_04630 at 5.220 kb on + strand, within MPMX19_04630 at 5.368 kb on + strand, within MPMX19_04630 at 5.446 kb on + strand, within MPMX19_04630 at 5.446 kb on + strand, within MPMX19_04630 at 5.446 kb on + strand, within MPMX19_04630 at 5.446 kb on + strand, within MPMX19_04630 at 5.446 kb on + strand, within MPMX19_04630 at 5.446 kb on + strand, within MPMX19_04630 at 5.446 kb on + strand, within MPMX19_04630 at 5.446 kb on + strand, within MPMX19_04630 at 5.446 kb on + strand, within MPMX19_04630 at 5.446 kb on + strand, within MPMX19_04630 at 5.446 kb on + strand, within MPMX19_04630 at 5.446 kb on + strand, within MPMX19_04630 at 5.446 kb on + strand, within MPMX19_04630 at 5.446 kb on + strand, within MPMX19_04630 at 5.446 kb on + strand, within MPMX19_04630 at 5.446 kb on + strand, within MPMX19_04630 at 5.446 kb on + strand, within MPMX19_04630 at 5.446 kb on + strand, within MPMX19_04630 at 5.447 kb on - strand, within MPMX19_04630 at 5.447 kb on - strand, within MPMX19_04630 at 5.447 kb on - strand, within MPMX19_04630 at 5.447 kb on - strand, within MPMX19_04630 at 5.447 kb on - strand, within MPMX19_04630 at 5.447 kb on - strand, within MPMX19_04630 at 5.447 kb on - strand, within MPMX19_04630 at 5.447 kb on - strand, within MPMX19_04630 at 5.447 kb on - strand, within MPMX19_04630 at 5.447 kb on - strand, within MPMX19_04630 at 5.447 kb on - strand, within MPMX19_04630 at 5.447 kb on - strand, within MPMX19_04630 at 5.572 kb on + strand, within MPMX19_04630 at 5.572 kb on + strand, within MPMX19_04630 at 5.573 kb on - strand, within MPMX19_04630 at 5.641 kb on + strand, within MPMX19_04630 at 5.641 kb on + strand, within MPMX19_04630 at 5.641 kb on + strand, within MPMX19_04630 at 5.641 kb on + strand, within MPMX19_04630 at 5.642 kb on - strand, within MPMX19_04630 at 5.642 kb on - strand, within MPMX19_04630 at 5.642 kb on - strand, within MPMX19_04630 at 5.642 kb on - strand, within MPMX19_04630 at 5.642 kb on - strand, within MPMX19_04630 at 5.642 kb on - strand, within MPMX19_04630
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 2,046 + MPMX19_04628 0.37 -2.1 2,046 + MPMX19_04628 0.37 +1.5 2,046 + MPMX19_04628 0.37 -1.6 2,047 - MPMX19_04628 0.37 +1.1 2,047 - MPMX19_04628 0.37 +0.9 2,143 + MPMX19_04628 0.44 +0.6 2,143 + MPMX19_04628 0.44 +1.1 2,143 + MPMX19_04628 0.44 +0.9 2,144 - MPMX19_04628 0.44 +0.7 2,144 - MPMX19_04628 0.44 -0.8 2,205 + MPMX19_04628 0.48 +0.9 2,206 - MPMX19_04628 0.49 -0.2 2,206 - MPMX19_04628 0.49 -1.1 2,307 + MPMX19_04628 0.56 -0.5 2,307 + MPMX19_04628 0.56 +0.4 2,307 + MPMX19_04628 0.56 -0.2 2,307 + MPMX19_04628 0.56 -0.8 2,308 - MPMX19_04628 0.56 -0.1 2,308 - MPMX19_04628 0.56 -1.3 2,308 - MPMX19_04628 0.56 +0.3 2,308 - MPMX19_04628 0.56 -1.1 2,505 + MPMX19_04628 0.70 -0.1 2,505 + MPMX19_04628 0.70 -1.5 2,505 + MPMX19_04628 0.70 +0.3 2,505 + MPMX19_04628 0.70 +0.3 2,505 + MPMX19_04628 0.70 +0.0 2,505 + MPMX19_04628 0.70 -0.1 2,505 + MPMX19_04628 0.70 -0.2 2,505 + MPMX19_04628 0.70 -1.9 2,505 + MPMX19_04628 0.70 -0.2 2,506 - MPMX19_04628 0.70 +1.5 2,506 - MPMX19_04628 0.70 +1.0 2,506 - MPMX19_04628 0.70 -0.1 2,568 + MPMX19_04628 0.75 -1.5 2,601 + MPMX19_04628 0.77 +0.8 2,601 + MPMX19_04628 0.77 +0.3 2,602 - MPMX19_04628 0.77 +0.2 2,731 - MPMX19_04628 0.86 -0.8 2,731 - MPMX19_04628 0.86 -0.2 2,763 + MPMX19_04628 0.89 +0.1 2,763 + MPMX19_04628 0.89 +1.5 2,763 + MPMX19_04628 0.89 -2.2 2,764 - MPMX19_04628 0.89 -0.5 2,879 + +0.4 2,879 + +0.8 2,880 - +0.4 2,880 - -0.4 2,880 - -0.8 2,880 - +0.5 2,940 + +0.5 2,941 - -2.1 2,987 + -1.6 3,064 + -0.4 3,065 - -0.1 3,422 + MPMX19_04629 0.25 +0.5 3,422 + MPMX19_04629 0.25 -0.5 3,422 + MPMX19_04629 0.25 +0.5 3,422 + MPMX19_04629 0.25 -0.6 3,422 + MPMX19_04629 0.25 +1.1 3,422 + MPMX19_04629 0.25 +1.5 3,422 + MPMX19_04629 0.25 -0.5 3,422 + MPMX19_04629 0.25 +1.9 3,423 - MPMX19_04629 0.25 -1.6 3,461 + MPMX19_04629 0.27 +0.6 3,461 + MPMX19_04629 0.27 +0.4 3,461 + MPMX19_04629 0.27 +0.9 3,462 - MPMX19_04629 0.27 -1.4 4,139 + MPMX19_04629 0.64 +0.5 4,139 + MPMX19_04629 0.64 -0.5 4,139 + MPMX19_04629 0.64 +1.2 4,139 + MPMX19_04629 0.64 +0.1 4,139 + MPMX19_04629 0.64 -0.1 4,139 + MPMX19_04629 0.64 -0.3 4,139 + MPMX19_04629 0.64 -1.5 4,139 + MPMX19_04629 0.64 +1.7 4,139 + MPMX19_04629 0.64 +1.5 4,139 + MPMX19_04629 0.64 -0.3 4,139 + MPMX19_04629 0.64 +0.5 4,139 + MPMX19_04629 0.64 +0.4 4,139 + MPMX19_04629 0.64 -0.9 4,139 + MPMX19_04629 0.64 -0.2 4,139 + MPMX19_04629 0.64 -0.1 4,140 - MPMX19_04629 0.64 +0.9 4,140 - MPMX19_04629 0.64 -0.6 4,140 - MPMX19_04629 0.64 +0.9 4,140 - MPMX19_04629 0.64 -0.2 4,140 - MPMX19_04629 0.64 +0.6 4,140 - MPMX19_04629 0.64 +0.4 4,193 + MPMX19_04629 0.67 -0.4 4,193 + MPMX19_04629 0.67 +0.2 4,193 + MPMX19_04629 0.67 +0.1 4,193 + MPMX19_04629 0.67 -0.5 4,193 + MPMX19_04629 0.67 -0.8 4,194 - MPMX19_04629 0.67 -2.3 4,194 - MPMX19_04629 0.67 -0.8 4,194 - MPMX19_04629 0.67 +0.6 4,194 - MPMX19_04629 0.67 -1.5 4,194 - MPMX19_04629 0.67 -0.6 4,202 + MPMX19_04629 0.67 +1.1 4,202 + MPMX19_04629 0.67 +0.3 4,202 + MPMX19_04629 0.67 -0.5 4,202 + MPMX19_04629 0.67 -0.8 4,202 + MPMX19_04629 0.67 +0.6 4,202 + MPMX19_04629 0.67 -1.1 4,202 + MPMX19_04629 0.67 +0.3 4,202 + MPMX19_04629 0.67 -0.2 4,202 + MPMX19_04629 0.67 +1.2 4,202 + MPMX19_04629 0.67 -0.2 4,202 + MPMX19_04629 0.67 +0.3 4,202 + MPMX19_04629 0.67 +1.0 4,202 + MPMX19_04629 0.67 -1.6 4,202 + MPMX19_04629 0.67 -1.6 4,203 - MPMX19_04629 0.67 +1.0 4,203 - MPMX19_04629 0.67 +0.5 4,203 - MPMX19_04629 0.67 -0.1 4,203 - MPMX19_04629 0.67 -1.8 4,203 - MPMX19_04629 0.67 +0.2 4,203 - MPMX19_04629 0.67 -0.8 4,203 - MPMX19_04629 0.67 +1.3 4,203 - MPMX19_04629 0.67 +0.5 4,280 + MPMX19_04629 0.71 +1.5 4,571 + MPMX19_04629 0.87 +0.9 4,571 + MPMX19_04629 0.87 +0.9 4,571 + MPMX19_04629 0.87 +0.7 4,572 - MPMX19_04629 0.87 +0.4 4,572 - MPMX19_04629 0.87 +0.9 4,572 - MPMX19_04629 0.87 -0.5 4,580 + MPMX19_04629 0.88 -1.3 4,580 + MPMX19_04629 0.88 -0.7 4,580 + MPMX19_04629 0.88 -1.1 4,580 + MPMX19_04629 0.88 -1.6 4,580 + MPMX19_04629 0.88 -0.3 4,584 - MPMX19_04629 0.88 +0.3 4,584 - MPMX19_04629 0.88 -1.1 4,584 - MPMX19_04629 0.88 -0.6 4,930 + -0.7 4,930 + -0.3 4,930 + -0.5 4,930 + -0.2 4,930 + +0.8 4,931 - +0.3 4,931 - -0.8 4,931 - -0.4 4,931 - -0.5 4,931 - +0.5 4,931 - -0.6 4,933 + +0.3 4,933 + -0.2 4,933 + +0.2 4,934 - +0.5 4,934 - +2.9 4,934 - +1.0 4,934 - -1.3 4,934 - -1.1 4,934 - +0.5 5,161 + MPMX19_04630 0.16 -2.1 5,161 + MPMX19_04630 0.16 -0.7 5,161 + MPMX19_04630 0.16 +0.4 5,161 + MPMX19_04630 0.16 -0.5 5,161 + MPMX19_04630 0.16 -1.9 5,161 + MPMX19_04630 0.16 -2.1 5,162 - MPMX19_04630 0.16 -0.8 5,162 - MPMX19_04630 0.16 -1.5 5,162 - MPMX19_04630 0.16 -1.1 5,162 - MPMX19_04630 0.16 +1.0 5,162 - MPMX19_04630 0.16 +0.1 5,162 - MPMX19_04630 0.16 -0.1 5,162 - MPMX19_04630 0.16 -0.4 5,220 + MPMX19_04630 0.19 -0.2 5,368 + MPMX19_04630 0.26 -1.8 5,446 + MPMX19_04630 0.29 -0.3 5,446 + MPMX19_04630 0.29 -1.1 5,446 + MPMX19_04630 0.29 +0.6 5,446 + MPMX19_04630 0.29 -1.3 5,446 + MPMX19_04630 0.29 -0.6 5,446 + MPMX19_04630 0.29 +0.5 5,446 + MPMX19_04630 0.29 -0.1 5,446 + MPMX19_04630 0.29 +0.8 5,446 + MPMX19_04630 0.29 -1.2 5,446 + MPMX19_04630 0.29 -0.3 5,446 + MPMX19_04630 0.29 -0.4 5,446 + MPMX19_04630 0.29 -0.3 5,446 + MPMX19_04630 0.29 -0.3 5,446 + MPMX19_04630 0.29 -0.1 5,446 + MPMX19_04630 0.29 +0.9 5,446 + MPMX19_04630 0.29 +1.1 5,446 + MPMX19_04630 0.29 +0.7 5,446 + MPMX19_04630 0.29 +0.0 5,447 - MPMX19_04630 0.29 +1.0 5,447 - MPMX19_04630 0.29 -0.8 5,447 - MPMX19_04630 0.29 -1.2 5,447 - MPMX19_04630 0.29 -0.9 5,447 - MPMX19_04630 0.29 -1.1 5,447 - MPMX19_04630 0.29 +1.9 5,447 - MPMX19_04630 0.29 -1.1 5,447 - MPMX19_04630 0.29 +0.1 5,447 - MPMX19_04630 0.29 -0.0 5,447 - MPMX19_04630 0.29 -0.3 5,447 - MPMX19_04630 0.29 +0.2 5,447 - MPMX19_04630 0.29 -0.9 5,572 + MPMX19_04630 0.35 -1.6 5,572 + MPMX19_04630 0.35 -0.2 5,573 - MPMX19_04630 0.35 -1.2 5,641 + MPMX19_04630 0.38 -0.1 5,641 + MPMX19_04630 0.38 -2.6 5,641 + MPMX19_04630 0.38 +0.4 5,641 + MPMX19_04630 0.38 -0.2 5,642 - MPMX19_04630 0.38 +1.0 5,642 - MPMX19_04630 0.38 -0.7 5,642 - MPMX19_04630 0.38 +0.1 5,642 - MPMX19_04630 0.38 -1.4 5,642 - MPMX19_04630 0.38 +0.4 5,642 - MPMX19_04630 0.38 -0.2
Or see this region's nucleotide sequence