Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04559 and MPMX19_04560 overlap by 4 nucleotides MPMX19_04560 and MPMX19_04561 overlap by 4 nucleotides MPMX19_04561 and MPMX19_04562 overlap by 11 nucleotides
MPMX19_04559: MPMX19_04559 - hypothetical protein, at 940,465 to 942,192
_04559
MPMX19_04560: MPMX19_04560 - hypothetical protein, at 942,189 to 942,710
_04560
MPMX19_04561: MPMX19_04561 - hypothetical protein, at 942,707 to 943,528
_04561
MPMX19_04562: MPMX19_04562 - hypothetical protein, at 943,518 to 944,435
_04562
Position (kb) 942
943 Strain fitness (log2 ratio) -2
-1
0
1 at 941.475 kb on + strand, within MPMX19_04559 at 941.475 kb on + strand, within MPMX19_04559 at 941.475 kb on + strand, within MPMX19_04559 at 941.475 kb on + strand, within MPMX19_04559 at 941.476 kb on - strand, within MPMX19_04559 at 941.476 kb on - strand, within MPMX19_04559 at 941.476 kb on - strand, within MPMX19_04559 at 941.476 kb on - strand, within MPMX19_04559 at 941.476 kb on - strand, within MPMX19_04559 at 941.843 kb on + strand, within MPMX19_04559 at 941.843 kb on + strand, within MPMX19_04559 at 941.844 kb on - strand, within MPMX19_04559 at 941.844 kb on - strand, within MPMX19_04559 at 941.849 kb on + strand, within MPMX19_04559 at 941.849 kb on + strand, within MPMX19_04559 at 941.850 kb on - strand, within MPMX19_04559 at 941.850 kb on - strand, within MPMX19_04559 at 941.927 kb on + strand, within MPMX19_04559 at 941.927 kb on + strand, within MPMX19_04559 at 941.927 kb on + strand, within MPMX19_04559 at 941.927 kb on + strand, within MPMX19_04559 at 941.927 kb on + strand, within MPMX19_04559 at 941.928 kb on - strand, within MPMX19_04559 at 941.928 kb on - strand, within MPMX19_04559 at 941.928 kb on - strand, within MPMX19_04559 at 942.298 kb on + strand, within MPMX19_04560 at 942.298 kb on + strand, within MPMX19_04560 at 942.298 kb on + strand, within MPMX19_04560 at 942.299 kb on - strand, within MPMX19_04560 at 942.484 kb on + strand, within MPMX19_04560 at 942.484 kb on + strand, within MPMX19_04560 at 942.601 kb on + strand, within MPMX19_04560 at 943.340 kb on + strand, within MPMX19_04561 at 943.479 kb on + strand at 943.479 kb on + strand at 943.479 kb on + strand at 943.480 kb on - strand at 943.480 kb on - strand at 943.480 kb on - strand at 943.480 kb on - strand at 943.480 kb on - strand at 943.480 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 941,475 + MPMX19_04559 0.58 -2.0 941,475 + MPMX19_04559 0.58 -1.6 941,475 + MPMX19_04559 0.58 -1.0 941,475 + MPMX19_04559 0.58 +0.0 941,476 - MPMX19_04559 0.59 -0.2 941,476 - MPMX19_04559 0.59 -1.3 941,476 - MPMX19_04559 0.59 -0.2 941,476 - MPMX19_04559 0.59 -1.0 941,476 - MPMX19_04559 0.59 -0.8 941,843 + MPMX19_04559 0.80 +0.1 941,843 + MPMX19_04559 0.80 -0.4 941,844 - MPMX19_04559 0.80 -1.7 941,844 - MPMX19_04559 0.80 -0.8 941,849 + MPMX19_04559 0.80 -0.6 941,849 + MPMX19_04559 0.80 -0.4 941,850 - MPMX19_04559 0.80 -0.1 941,850 - MPMX19_04559 0.80 -0.7 941,927 + MPMX19_04559 0.85 +0.8 941,927 + MPMX19_04559 0.85 +1.3 941,927 + MPMX19_04559 0.85 -0.2 941,927 + MPMX19_04559 0.85 +1.6 941,927 + MPMX19_04559 0.85 -1.4 941,928 - MPMX19_04559 0.85 +0.0 941,928 - MPMX19_04559 0.85 -0.7 941,928 - MPMX19_04559 0.85 -1.0 942,298 + MPMX19_04560 0.21 -1.7 942,298 + MPMX19_04560 0.21 +0.6 942,298 + MPMX19_04560 0.21 -1.0 942,299 - MPMX19_04560 0.21 -1.3 942,484 + MPMX19_04560 0.57 +0.3 942,484 + MPMX19_04560 0.57 -0.7 942,601 + MPMX19_04560 0.79 +1.4 943,340 + MPMX19_04561 0.77 +0.2 943,479 + +0.1 943,479 + -0.7 943,479 + -0.4 943,480 - -0.8 943,480 - +0.4 943,480 - -0.4 943,480 - -0.5 943,480 - -0.3 943,480 - +1.1
Or see this region's nucleotide sequence