Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04558 and MPMX19_04559 are separated by 27 nucleotides MPMX19_04559 and MPMX19_04560 overlap by 4 nucleotides MPMX19_04560 and MPMX19_04561 overlap by 4 nucleotides
MPMX19_04558: MPMX19_04558 - hypothetical protein, at 937,810 to 940,437
_04558
MPMX19_04559: MPMX19_04559 - hypothetical protein, at 940,465 to 942,192
_04559
MPMX19_04560: MPMX19_04560 - hypothetical protein, at 942,189 to 942,710
_04560
MPMX19_04561: MPMX19_04561 - hypothetical protein, at 942,707 to 943,528
_04561
Position (kb) 940
941
942
943 Strain fitness (log2 ratio) -2
-1
0
1 at 939.498 kb on - strand, within MPMX19_04558 at 940.037 kb on + strand, within MPMX19_04558 at 940.037 kb on + strand, within MPMX19_04558 at 940.038 kb on - strand, within MPMX19_04558 at 940.218 kb on - strand at 940.218 kb on - strand at 940.218 kb on - strand at 941.475 kb on + strand, within MPMX19_04559 at 941.475 kb on + strand, within MPMX19_04559 at 941.475 kb on + strand, within MPMX19_04559 at 941.475 kb on + strand, within MPMX19_04559 at 941.476 kb on - strand, within MPMX19_04559 at 941.476 kb on - strand, within MPMX19_04559 at 941.476 kb on - strand, within MPMX19_04559 at 941.476 kb on - strand, within MPMX19_04559 at 941.476 kb on - strand, within MPMX19_04559 at 941.843 kb on + strand, within MPMX19_04559 at 941.843 kb on + strand, within MPMX19_04559 at 941.844 kb on - strand, within MPMX19_04559 at 941.844 kb on - strand, within MPMX19_04559 at 941.849 kb on + strand, within MPMX19_04559 at 941.849 kb on + strand, within MPMX19_04559 at 941.850 kb on - strand, within MPMX19_04559 at 941.850 kb on - strand, within MPMX19_04559 at 941.927 kb on + strand, within MPMX19_04559 at 941.927 kb on + strand, within MPMX19_04559 at 941.927 kb on + strand, within MPMX19_04559 at 941.927 kb on + strand, within MPMX19_04559 at 941.927 kb on + strand, within MPMX19_04559 at 941.928 kb on - strand, within MPMX19_04559 at 941.928 kb on - strand, within MPMX19_04559 at 941.928 kb on - strand, within MPMX19_04559 at 942.298 kb on + strand, within MPMX19_04560 at 942.298 kb on + strand, within MPMX19_04560 at 942.298 kb on + strand, within MPMX19_04560 at 942.299 kb on - strand, within MPMX19_04560 at 942.484 kb on + strand, within MPMX19_04560 at 942.484 kb on + strand, within MPMX19_04560 at 942.601 kb on + strand, within MPMX19_04560
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 939,498 - MPMX19_04558 0.64 +0.6 940,037 + MPMX19_04558 0.85 -1.2 940,037 + MPMX19_04558 0.85 +1.6 940,038 - MPMX19_04558 0.85 -1.0 940,218 - -1.0 940,218 - +0.0 940,218 - +0.6 941,475 + MPMX19_04559 0.58 -2.0 941,475 + MPMX19_04559 0.58 -1.6 941,475 + MPMX19_04559 0.58 -1.0 941,475 + MPMX19_04559 0.58 +0.0 941,476 - MPMX19_04559 0.59 -0.2 941,476 - MPMX19_04559 0.59 -1.3 941,476 - MPMX19_04559 0.59 -0.2 941,476 - MPMX19_04559 0.59 -1.0 941,476 - MPMX19_04559 0.59 -0.8 941,843 + MPMX19_04559 0.80 +0.1 941,843 + MPMX19_04559 0.80 -0.4 941,844 - MPMX19_04559 0.80 -1.7 941,844 - MPMX19_04559 0.80 -0.8 941,849 + MPMX19_04559 0.80 -0.6 941,849 + MPMX19_04559 0.80 -0.4 941,850 - MPMX19_04559 0.80 -0.1 941,850 - MPMX19_04559 0.80 -0.7 941,927 + MPMX19_04559 0.85 +0.8 941,927 + MPMX19_04559 0.85 +1.3 941,927 + MPMX19_04559 0.85 -0.2 941,927 + MPMX19_04559 0.85 +1.6 941,927 + MPMX19_04559 0.85 -1.4 941,928 - MPMX19_04559 0.85 +0.0 941,928 - MPMX19_04559 0.85 -0.7 941,928 - MPMX19_04559 0.85 -1.0 942,298 + MPMX19_04560 0.21 -1.7 942,298 + MPMX19_04560 0.21 +0.6 942,298 + MPMX19_04560 0.21 -1.0 942,299 - MPMX19_04560 0.21 -1.3 942,484 + MPMX19_04560 0.57 +0.3 942,484 + MPMX19_04560 0.57 -0.7 942,601 + MPMX19_04560 0.79 +1.4
Or see this region's nucleotide sequence