Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03965 and MPMX19_03966 are separated by 352 nucleotides MPMX19_03966 and MPMX19_03967 are separated by 97 nucleotides MPMX19_03967 and MPMX19_03968 are separated by 62 nucleotides
MPMX19_03965: MPMX19_03965 - Poly(3-hydroxyalkanoate) polymerase subunit PhaC, at 252,645 to 254,480
_03965
MPMX19_03966: MPMX19_03966 - hypothetical protein, at 254,833 to 255,249
_03966
MPMX19_03967: MPMX19_03967 - Type I secretion system membrane fusion protein PrsE, at 255,347 to 256,762
_03967
MPMX19_03968: MPMX19_03968 - Type I secretion system ATP-binding protein PrsD, at 256,825 to 258,594
_03968
Position (kb) 255
256
257 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 254.602 kb on + strand at 254.602 kb on + strand at 254.602 kb on + strand at 254.602 kb on + strand at 254.602 kb on + strand at 254.602 kb on + strand at 254.603 kb on - strand at 254.603 kb on - strand at 254.603 kb on - strand at 254.603 kb on - strand at 254.604 kb on + strand at 254.604 kb on + strand at 254.604 kb on + strand at 254.604 kb on + strand at 254.604 kb on + strand at 254.604 kb on + strand at 254.604 kb on + strand at 254.604 kb on + strand at 254.604 kb on + strand at 254.604 kb on + strand at 254.604 kb on + strand at 254.604 kb on + strand at 254.604 kb on + strand at 254.604 kb on + strand at 254.604 kb on + strand at 254.604 kb on + strand at 254.604 kb on + strand at 254.605 kb on - strand at 254.605 kb on - strand at 254.605 kb on - strand at 254.605 kb on - strand at 254.605 kb on - strand at 254.605 kb on - strand at 254.605 kb on - strand at 254.605 kb on - strand at 254.605 kb on - strand at 254.721 kb on + strand at 254.721 kb on + strand at 254.721 kb on + strand at 254.721 kb on + strand at 254.722 kb on - strand at 254.756 kb on + strand at 254.756 kb on + strand at 254.756 kb on + strand at 254.756 kb on + strand at 254.756 kb on + strand at 254.756 kb on + strand at 254.756 kb on + strand at 254.756 kb on + strand at 254.756 kb on + strand at 254.757 kb on - strand at 254.757 kb on - strand at 254.757 kb on - strand at 254.757 kb on - strand at 254.897 kb on + strand, within MPMX19_03966 at 254.898 kb on - strand, within MPMX19_03966 at 254.898 kb on - strand, within MPMX19_03966 at 254.898 kb on - strand, within MPMX19_03966 at 255.303 kb on + strand at 255.303 kb on + strand at 255.303 kb on + strand at 255.303 kb on + strand at 255.304 kb on - strand at 255.304 kb on - strand at 255.304 kb on - strand at 255.304 kb on - strand at 255.305 kb on + strand at 255.305 kb on + strand at 255.305 kb on + strand at 255.305 kb on + strand at 255.305 kb on + strand at 255.306 kb on - strand at 255.306 kb on - strand at 255.372 kb on + strand at 255.372 kb on + strand at 255.372 kb on + strand at 255.372 kb on + strand at 255.372 kb on + strand at 255.372 kb on + strand at 255.373 kb on - strand at 255.373 kb on - strand at 255.373 kb on - strand at 255.373 kb on - strand at 255.373 kb on - strand at 255.373 kb on - strand at 255.373 kb on - strand at 255.399 kb on + strand at 255.399 kb on + strand at 255.399 kb on + strand at 255.399 kb on + strand at 255.399 kb on + strand at 255.399 kb on + strand at 255.400 kb on - strand at 255.400 kb on - strand at 255.400 kb on - strand at 255.400 kb on - strand at 255.400 kb on - strand at 255.400 kb on - strand at 255.516 kb on + strand, within MPMX19_03967 at 255.516 kb on + strand, within MPMX19_03967 at 255.516 kb on + strand, within MPMX19_03967 at 255.516 kb on + strand, within MPMX19_03967 at 255.516 kb on + strand, within MPMX19_03967 at 255.516 kb on + strand, within MPMX19_03967 at 255.517 kb on - strand, within MPMX19_03967 at 255.517 kb on - strand, within MPMX19_03967 at 255.517 kb on - strand, within MPMX19_03967 at 255.517 kb on - strand, within MPMX19_03967 at 255.519 kb on + strand, within MPMX19_03967 at 255.519 kb on + strand, within MPMX19_03967 at 255.520 kb on - strand, within MPMX19_03967 at 255.520 kb on - strand, within MPMX19_03967 at 255.520 kb on - strand, within MPMX19_03967 at 255.520 kb on - strand, within MPMX19_03967 at 255.564 kb on + strand, within MPMX19_03967 at 255.564 kb on + strand, within MPMX19_03967 at 255.564 kb on + strand, within MPMX19_03967 at 255.564 kb on + strand, within MPMX19_03967 at 255.564 kb on + strand, within MPMX19_03967 at 255.564 kb on + strand, within MPMX19_03967 at 255.564 kb on + strand, within MPMX19_03967 at 255.564 kb on + strand, within MPMX19_03967 at 255.564 kb on + strand, within MPMX19_03967 at 255.564 kb on + strand, within MPMX19_03967 at 255.564 kb on + strand, within MPMX19_03967 at 255.564 kb on + strand, within MPMX19_03967 at 255.564 kb on + strand, within MPMX19_03967 at 255.565 kb on - strand, within MPMX19_03967 at 255.565 kb on - strand, within MPMX19_03967 at 255.565 kb on - strand, within MPMX19_03967 at 255.565 kb on - strand, within MPMX19_03967 at 255.565 kb on - strand, within MPMX19_03967 at 255.565 kb on - strand, within MPMX19_03967 at 255.565 kb on - strand, within MPMX19_03967 at 255.565 kb on - strand, within MPMX19_03967 at 255.565 kb on - strand, within MPMX19_03967 at 255.565 kb on - strand, within MPMX19_03967 at 255.565 kb on - strand, within MPMX19_03967 at 255.565 kb on - strand, within MPMX19_03967 at 255.565 kb on - strand, within MPMX19_03967 at 255.565 kb on - strand, within MPMX19_03967 at 255.606 kb on + strand, within MPMX19_03967 at 255.607 kb on - strand, within MPMX19_03967 at 255.607 kb on - strand, within MPMX19_03967 at 255.607 kb on - strand, within MPMX19_03967 at 255.607 kb on - strand, within MPMX19_03967 at 255.762 kb on + strand, within MPMX19_03967 at 255.762 kb on + strand, within MPMX19_03967 at 255.762 kb on + strand, within MPMX19_03967 at 255.762 kb on + strand, within MPMX19_03967 at 255.762 kb on + strand, within MPMX19_03967 at 255.762 kb on + strand, within MPMX19_03967 at 255.762 kb on + strand, within MPMX19_03967 at 255.762 kb on + strand, within MPMX19_03967 at 255.762 kb on + strand, within MPMX19_03967 at 255.763 kb on - strand, within MPMX19_03967 at 255.763 kb on - strand, within MPMX19_03967 at 255.763 kb on - strand, within MPMX19_03967 at 255.763 kb on - strand, within MPMX19_03967 at 255.763 kb on - strand, within MPMX19_03967 at 255.763 kb on - strand, within MPMX19_03967 at 255.763 kb on - strand, within MPMX19_03967 at 255.763 kb on - strand, within MPMX19_03967 at 255.763 kb on - strand, within MPMX19_03967 at 255.763 kb on - strand, within MPMX19_03967 at 255.763 kb on - strand, within MPMX19_03967 at 255.763 kb on - strand, within MPMX19_03967 at 255.763 kb on - strand, within MPMX19_03967 at 255.763 kb on - strand, within MPMX19_03967 at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.964 kb on + strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.965 kb on - strand at 256.980 kb on + strand at 256.980 kb on + strand at 256.980 kb on + strand at 256.980 kb on + strand at 256.980 kb on + strand at 256.980 kb on + strand at 256.980 kb on + strand at 256.981 kb on - strand at 256.981 kb on - strand at 256.981 kb on - strand at 256.981 kb on - strand at 256.981 kb on - strand at 256.981 kb on - strand at 256.981 kb on - strand at 256.981 kb on - strand at 257.204 kb on + strand, within MPMX19_03968 at 257.205 kb on - strand, within MPMX19_03968 at 257.205 kb on - strand, within MPMX19_03968
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 254,602 + -0.0 254,602 + -1.8 254,602 + -0.8 254,602 + -1.8 254,602 + +0.1 254,602 + -0.1 254,603 - +0.5 254,603 - +0.9 254,603 - +0.4 254,603 - +0.7 254,604 + -0.0 254,604 + -2.0 254,604 + -0.7 254,604 + +0.0 254,604 + -0.7 254,604 + -1.8 254,604 + -0.4 254,604 + -1.4 254,604 + +0.4 254,604 + +0.2 254,604 + +0.0 254,604 + -2.7 254,604 + -0.9 254,604 + -0.9 254,604 + -0.6 254,604 + +0.3 254,604 + -0.4 254,605 - +0.9 254,605 - +0.3 254,605 - -1.5 254,605 - +0.3 254,605 - -1.0 254,605 - +0.5 254,605 - -2.4 254,605 - -1.1 254,605 - +0.4 254,721 + -0.0 254,721 + -0.5 254,721 + -1.5 254,721 + -0.1 254,722 - +1.1 254,756 + +1.6 254,756 + -0.0 254,756 + +0.1 254,756 + -0.0 254,756 + -0.6 254,756 + -1.9 254,756 + -0.6 254,756 + +0.7 254,756 + -1.0 254,757 - -0.2 254,757 - +0.7 254,757 - -2.5 254,757 - -1.8 254,897 + MPMX19_03966 0.15 -0.2 254,898 - MPMX19_03966 0.16 +1.0 254,898 - MPMX19_03966 0.16 -0.8 254,898 - MPMX19_03966 0.16 -1.3 255,303 + +0.1 255,303 + -0.0 255,303 + -1.5 255,303 + +0.1 255,304 - -0.0 255,304 - -0.8 255,304 - -0.8 255,304 - +0.3 255,305 + -0.9 255,305 + +0.3 255,305 + -0.7 255,305 + -0.9 255,305 + -1.8 255,306 - -0.3 255,306 - -0.8 255,372 + -0.1 255,372 + -1.2 255,372 + +0.4 255,372 + -1.4 255,372 + +1.3 255,372 + +0.6 255,373 - +0.1 255,373 - -0.4 255,373 - -1.2 255,373 - -0.6 255,373 - -0.6 255,373 - -1.0 255,373 - +0.8 255,399 + -0.9 255,399 + -0.0 255,399 + -1.6 255,399 + -1.0 255,399 + -1.1 255,399 + -0.8 255,400 - -0.2 255,400 - -0.8 255,400 - -0.6 255,400 - -1.1 255,400 - -0.8 255,400 - -2.3 255,516 + MPMX19_03967 0.12 +0.3 255,516 + MPMX19_03967 0.12 +0.4 255,516 + MPMX19_03967 0.12 -2.1 255,516 + MPMX19_03967 0.12 -1.0 255,516 + MPMX19_03967 0.12 +0.1 255,516 + MPMX19_03967 0.12 -1.9 255,517 - MPMX19_03967 0.12 -0.0 255,517 - MPMX19_03967 0.12 -0.9 255,517 - MPMX19_03967 0.12 -0.9 255,517 - MPMX19_03967 0.12 -1.4 255,519 + MPMX19_03967 0.12 -0.4 255,519 + MPMX19_03967 0.12 -0.6 255,520 - MPMX19_03967 0.12 -1.0 255,520 - MPMX19_03967 0.12 -2.3 255,520 - MPMX19_03967 0.12 -0.9 255,520 - MPMX19_03967 0.12 -0.8 255,564 + MPMX19_03967 0.15 -0.9 255,564 + MPMX19_03967 0.15 -0.0 255,564 + MPMX19_03967 0.15 -0.3 255,564 + MPMX19_03967 0.15 -0.3 255,564 + MPMX19_03967 0.15 -2.1 255,564 + MPMX19_03967 0.15 -0.0 255,564 + MPMX19_03967 0.15 -0.7 255,564 + MPMX19_03967 0.15 -0.3 255,564 + MPMX19_03967 0.15 -0.2 255,564 + MPMX19_03967 0.15 -0.2 255,564 + MPMX19_03967 0.15 -1.6 255,564 + MPMX19_03967 0.15 +0.2 255,564 + MPMX19_03967 0.15 -0.8 255,565 - MPMX19_03967 0.15 +0.2 255,565 - MPMX19_03967 0.15 -0.1 255,565 - MPMX19_03967 0.15 -1.0 255,565 - MPMX19_03967 0.15 -0.4 255,565 - MPMX19_03967 0.15 -1.7 255,565 - MPMX19_03967 0.15 +0.4 255,565 - MPMX19_03967 0.15 -0.2 255,565 - MPMX19_03967 0.15 +0.1 255,565 - MPMX19_03967 0.15 -0.7 255,565 - MPMX19_03967 0.15 -0.2 255,565 - MPMX19_03967 0.15 +1.2 255,565 - MPMX19_03967 0.15 -1.4 255,565 - MPMX19_03967 0.15 -0.4 255,565 - MPMX19_03967 0.15 +0.8 255,606 + MPMX19_03967 0.18 -0.0 255,607 - MPMX19_03967 0.18 +0.1 255,607 - MPMX19_03967 0.18 +0.4 255,607 - MPMX19_03967 0.18 +0.8 255,607 - MPMX19_03967 0.18 +0.2 255,762 + MPMX19_03967 0.29 +0.7 255,762 + MPMX19_03967 0.29 -0.8 255,762 + MPMX19_03967 0.29 +0.1 255,762 + MPMX19_03967 0.29 -3.4 255,762 + MPMX19_03967 0.29 +0.3 255,762 + MPMX19_03967 0.29 -1.0 255,762 + MPMX19_03967 0.29 -0.2 255,762 + MPMX19_03967 0.29 -0.6 255,762 + MPMX19_03967 0.29 -0.6 255,763 - MPMX19_03967 0.29 -0.0 255,763 - MPMX19_03967 0.29 -0.8 255,763 - MPMX19_03967 0.29 -0.9 255,763 - MPMX19_03967 0.29 -1.3 255,763 - MPMX19_03967 0.29 -1.9 255,763 - MPMX19_03967 0.29 +0.7 255,763 - MPMX19_03967 0.29 -0.2 255,763 - MPMX19_03967 0.29 -0.8 255,763 - MPMX19_03967 0.29 -0.1 255,763 - MPMX19_03967 0.29 -0.2 255,763 - MPMX19_03967 0.29 -0.6 255,763 - MPMX19_03967 0.29 +0.1 255,763 - MPMX19_03967 0.29 -0.3 255,763 - MPMX19_03967 0.29 -0.2 256,964 + -0.9 256,964 + +0.3 256,964 + -0.2 256,964 + +0.3 256,964 + -0.7 256,964 + -1.8 256,964 + -1.4 256,964 + +1.0 256,964 + +0.3 256,964 + -0.6 256,964 + +1.0 256,964 + +0.6 256,964 + +0.2 256,964 + +0.3 256,964 + -0.3 256,964 + -0.0 256,964 + +0.1 256,964 + -1.4 256,964 + +0.4 256,964 + -0.2 256,964 + -0.0 256,964 + +1.3 256,964 + -0.4 256,964 + +0.6 256,964 + -1.4 256,964 + -0.4 256,964 + -0.4 256,964 + -0.4 256,964 + -0.7 256,964 + -1.4 256,964 + +0.0 256,965 - -0.5 256,965 - -1.0 256,965 - -0.6 256,965 - -0.5 256,965 - +0.4 256,965 - +0.3 256,965 - -0.8 256,965 - -0.4 256,965 - -0.4 256,965 - -1.1 256,965 - -2.5 256,965 - -1.2 256,965 - +1.0 256,965 - -0.7 256,965 - +0.6 256,965 - -0.3 256,965 - -0.8 256,965 - -1.4 256,965 - -1.2 256,965 - -1.5 256,965 - -1.2 256,965 - +0.2 256,965 - +0.6 256,965 - +0.7 256,965 - +0.3 256,965 - -2.1 256,965 - -1.2 256,965 - -0.6 256,980 + -0.1 256,980 + +0.6 256,980 + -0.4 256,980 + -1.3 256,980 + -0.6 256,980 + -1.5 256,980 + +1.4 256,981 - +0.4 256,981 - -1.2 256,981 - -0.0 256,981 - -0.9 256,981 - -0.4 256,981 - -0.2 256,981 - -2.2 256,981 - -0.6 257,204 + MPMX19_03968 0.21 +0.1 257,205 - MPMX19_03968 0.21 -0.2 257,205 - MPMX19_03968 0.21 +0.1
Or see this region's nucleotide sequence