Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03289 and MPMX19_03290 are separated by 403 nucleotides MPMX19_03290 and MPMX19_03291 are separated by 41 nucleotides MPMX19_03291 and MPMX19_03292 are separated by 114 nucleotides
MPMX19_03289: MPMX19_03289 - Non-heme chloroperoxidase, at 636,302 to 637,330
_03289
MPMX19_03290: MPMX19_03290 - hypothetical protein, at 637,734 to 638,378
_03290
MPMX19_03291: MPMX19_03291 - hypothetical protein, at 638,420 to 639,148
_03291
MPMX19_03292: MPMX19_03292 - hypothetical protein, at 639,263 to 639,808
_03292
Position (kb) 637
638
639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 636.816 kb on + strand, within MPMX19_03289 at 636.816 kb on + strand, within MPMX19_03289 at 636.816 kb on + strand, within MPMX19_03289 at 636.816 kb on + strand, within MPMX19_03289 at 636.816 kb on + strand, within MPMX19_03289 at 636.817 kb on - strand, within MPMX19_03289 at 636.817 kb on - strand, within MPMX19_03289 at 636.909 kb on + strand, within MPMX19_03289 at 636.909 kb on + strand, within MPMX19_03289 at 636.909 kb on + strand, within MPMX19_03289 at 636.910 kb on - strand, within MPMX19_03289 at 636.910 kb on - strand, within MPMX19_03289 at 636.910 kb on - strand, within MPMX19_03289 at 636.910 kb on - strand, within MPMX19_03289 at 636.910 kb on - strand, within MPMX19_03289 at 636.910 kb on - strand, within MPMX19_03289 at 637.092 kb on + strand, within MPMX19_03289 at 637.092 kb on + strand, within MPMX19_03289 at 637.093 kb on - strand, within MPMX19_03289 at 637.093 kb on - strand, within MPMX19_03289 at 637.095 kb on + strand, within MPMX19_03289 at 637.095 kb on + strand, within MPMX19_03289 at 637.095 kb on + strand, within MPMX19_03289 at 637.095 kb on + strand, within MPMX19_03289 at 637.095 kb on + strand, within MPMX19_03289 at 637.095 kb on + strand, within MPMX19_03289 at 637.095 kb on + strand, within MPMX19_03289 at 637.095 kb on + strand, within MPMX19_03289 at 637.096 kb on - strand, within MPMX19_03289 at 637.096 kb on - strand, within MPMX19_03289 at 637.096 kb on - strand, within MPMX19_03289 at 637.411 kb on + strand at 637.433 kb on - strand at 637.464 kb on + strand at 637.465 kb on - strand at 637.465 kb on - strand at 637.469 kb on - strand at 637.472 kb on - strand at 637.472 kb on - strand at 637.493 kb on + strand at 637.493 kb on + strand at 637.513 kb on + strand at 637.514 kb on - strand at 637.618 kb on + strand at 637.618 kb on + strand at 637.619 kb on - strand at 638.376 kb on + strand at 638.376 kb on + strand at 638.376 kb on + strand at 638.491 kb on + strand at 638.491 kb on + strand at 638.491 kb on + strand at 638.491 kb on + strand at 638.491 kb on + strand at 638.491 kb on + strand at 638.491 kb on + strand at 638.491 kb on + strand at 638.491 kb on + strand at 638.492 kb on - strand at 638.492 kb on - strand at 638.492 kb on - strand at 638.669 kb on + strand, within MPMX19_03291 at 638.669 kb on + strand, within MPMX19_03291 at 638.669 kb on + strand, within MPMX19_03291 at 638.669 kb on + strand, within MPMX19_03291 at 638.669 kb on + strand, within MPMX19_03291 at 638.669 kb on + strand, within MPMX19_03291 at 638.669 kb on + strand, within MPMX19_03291 at 638.669 kb on + strand, within MPMX19_03291 at 638.670 kb on - strand, within MPMX19_03291 at 638.670 kb on - strand, within MPMX19_03291 at 638.670 kb on - strand, within MPMX19_03291 at 638.670 kb on - strand, within MPMX19_03291 at 638.670 kb on - strand, within MPMX19_03291 at 638.675 kb on + strand, within MPMX19_03291 at 638.675 kb on + strand, within MPMX19_03291 at 638.675 kb on + strand, within MPMX19_03291 at 638.675 kb on + strand, within MPMX19_03291 at 638.675 kb on + strand, within MPMX19_03291 at 638.675 kb on + strand, within MPMX19_03291 at 638.675 kb on + strand, within MPMX19_03291 at 638.675 kb on + strand, within MPMX19_03291 at 638.676 kb on - strand, within MPMX19_03291 at 638.676 kb on - strand, within MPMX19_03291 at 638.676 kb on - strand, within MPMX19_03291 at 638.676 kb on - strand, within MPMX19_03291 at 638.676 kb on - strand, within MPMX19_03291 at 638.676 kb on - strand, within MPMX19_03291 at 638.676 kb on - strand, within MPMX19_03291 at 638.676 kb on - strand, within MPMX19_03291 at 638.781 kb on - strand, within MPMX19_03291 at 638.942 kb on + strand, within MPMX19_03291 at 638.942 kb on + strand, within MPMX19_03291 at 639.146 kb on + strand at 639.147 kb on - strand at 639.147 kb on - strand at 639.147 kb on - strand at 639.147 kb on - strand at 639.147 kb on - strand at 639.147 kb on - strand at 639.147 kb on - strand at 639.254 kb on + strand at 639.254 kb on + strand at 639.254 kb on + strand at 639.254 kb on + strand at 639.255 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 636,816 + MPMX19_03289 0.50 -0.4 636,816 + MPMX19_03289 0.50 +0.4 636,816 + MPMX19_03289 0.50 -1.2 636,816 + MPMX19_03289 0.50 +1.1 636,816 + MPMX19_03289 0.50 +0.2 636,817 - MPMX19_03289 0.50 -0.5 636,817 - MPMX19_03289 0.50 -1.4 636,909 + MPMX19_03289 0.59 -0.5 636,909 + MPMX19_03289 0.59 -0.6 636,909 + MPMX19_03289 0.59 +0.5 636,910 - MPMX19_03289 0.59 -2.7 636,910 - MPMX19_03289 0.59 -0.3 636,910 - MPMX19_03289 0.59 -0.6 636,910 - MPMX19_03289 0.59 +1.3 636,910 - MPMX19_03289 0.59 +0.1 636,910 - MPMX19_03289 0.59 -1.6 637,092 + MPMX19_03289 0.77 -0.3 637,092 + MPMX19_03289 0.77 -1.5 637,093 - MPMX19_03289 0.77 -0.0 637,093 - MPMX19_03289 0.77 +0.3 637,095 + MPMX19_03289 0.77 -0.4 637,095 + MPMX19_03289 0.77 +0.6 637,095 + MPMX19_03289 0.77 -0.1 637,095 + MPMX19_03289 0.77 -0.4 637,095 + MPMX19_03289 0.77 +0.2 637,095 + MPMX19_03289 0.77 -1.0 637,095 + MPMX19_03289 0.77 -1.6 637,095 + MPMX19_03289 0.77 +0.8 637,096 - MPMX19_03289 0.77 +0.5 637,096 - MPMX19_03289 0.77 -1.9 637,096 - MPMX19_03289 0.77 -1.2 637,411 + +0.4 637,433 - +0.7 637,464 + -0.1 637,465 - -0.3 637,465 - -0.0 637,469 - -2.2 637,472 - +0.3 637,472 - -0.1 637,493 + -0.5 637,493 + +0.2 637,513 + +1.1 637,514 - +0.2 637,618 + -1.5 637,618 + +0.7 637,619 - -0.5 638,376 + +0.3 638,376 + -0.9 638,376 + -1.5 638,491 + +2.3 638,491 + -0.4 638,491 + +0.4 638,491 + +0.1 638,491 + -0.8 638,491 + -0.3 638,491 + -1.7 638,491 + +0.0 638,491 + -0.1 638,492 - -0.8 638,492 - +0.0 638,492 - +0.0 638,669 + MPMX19_03291 0.34 -0.3 638,669 + MPMX19_03291 0.34 -2.2 638,669 + MPMX19_03291 0.34 +0.5 638,669 + MPMX19_03291 0.34 +1.5 638,669 + MPMX19_03291 0.34 -0.8 638,669 + MPMX19_03291 0.34 -1.6 638,669 + MPMX19_03291 0.34 +0.3 638,669 + MPMX19_03291 0.34 +2.1 638,670 - MPMX19_03291 0.34 -0.8 638,670 - MPMX19_03291 0.34 +0.3 638,670 - MPMX19_03291 0.34 -0.6 638,670 - MPMX19_03291 0.34 -0.1 638,670 - MPMX19_03291 0.34 -0.1 638,675 + MPMX19_03291 0.35 +0.6 638,675 + MPMX19_03291 0.35 -0.7 638,675 + MPMX19_03291 0.35 -0.7 638,675 + MPMX19_03291 0.35 +0.5 638,675 + MPMX19_03291 0.35 +0.3 638,675 + MPMX19_03291 0.35 +0.4 638,675 + MPMX19_03291 0.35 -0.9 638,675 + MPMX19_03291 0.35 +1.1 638,676 - MPMX19_03291 0.35 +0.6 638,676 - MPMX19_03291 0.35 +0.2 638,676 - MPMX19_03291 0.35 -1.3 638,676 - MPMX19_03291 0.35 +0.3 638,676 - MPMX19_03291 0.35 -1.1 638,676 - MPMX19_03291 0.35 +1.5 638,676 - MPMX19_03291 0.35 +0.1 638,676 - MPMX19_03291 0.35 -1.2 638,781 - MPMX19_03291 0.50 -1.1 638,942 + MPMX19_03291 0.72 -1.4 638,942 + MPMX19_03291 0.72 +0.3 639,146 + -3.7 639,147 - -0.5 639,147 - -0.5 639,147 - -0.3 639,147 - -0.3 639,147 - -1.9 639,147 - +0.5 639,147 - -0.5 639,254 + -0.5 639,254 + +0.1 639,254 + -0.0 639,254 + -0.8 639,255 - -1.2
Or see this region's nucleotide sequence