Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03182 and MPMX19_03183 are separated by 687 nucleotides MPMX19_03183 and MPMX19_03184 are separated by 98 nucleotides MPMX19_03184 and MPMX19_03185 are separated by 27 nucleotides
MPMX19_03182: MPMX19_03182 - hypothetical protein, at 476,660 to 477,553
_03182
MPMX19_03183: MPMX19_03183 - hypothetical protein, at 478,241 to 478,546
_03183
MPMX19_03184: MPMX19_03184 - hypothetical protein, at 478,645 to 479,001
_03184
MPMX19_03185: MPMX19_03185 - IS3 family transposase ISMdi5, at 479,029 to 479,889
_03185
Position (kb) 478
479 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 477.410 kb on + strand, within MPMX19_03182 at 477.410 kb on + strand, within MPMX19_03182 at 477.410 kb on + strand, within MPMX19_03182 at 477.411 kb on - strand, within MPMX19_03182 at 477.456 kb on + strand, within MPMX19_03182 at 477.456 kb on + strand, within MPMX19_03182 at 477.456 kb on + strand, within MPMX19_03182 at 477.456 kb on + strand, within MPMX19_03182 at 477.457 kb on - strand, within MPMX19_03182 at 477.457 kb on - strand, within MPMX19_03182 at 477.457 kb on - strand, within MPMX19_03182 at 477.457 kb on - strand, within MPMX19_03182 at 477.465 kb on + strand at 477.466 kb on - strand at 477.466 kb on - strand at 477.573 kb on + strand at 477.573 kb on + strand at 477.573 kb on + strand at 477.574 kb on - strand at 477.574 kb on - strand at 477.574 kb on - strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.575 kb on + strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.576 kb on - strand at 477.608 kb on + strand at 477.608 kb on + strand at 477.608 kb on + strand at 477.608 kb on + strand at 477.609 kb on - strand at 477.609 kb on - strand at 477.727 kb on + strand at 477.760 kb on + strand at 477.760 kb on + strand at 477.760 kb on + strand at 477.760 kb on + strand at 477.761 kb on - strand at 477.854 kb on + strand at 477.854 kb on + strand at 477.854 kb on + strand at 477.855 kb on - strand at 477.855 kb on - strand at 477.855 kb on - strand at 477.937 kb on + strand at 477.937 kb on + strand at 477.937 kb on + strand at 477.938 kb on - strand at 477.938 kb on - strand at 477.938 kb on - strand at 477.938 kb on - strand at 478.035 kb on + strand at 478.035 kb on + strand at 478.035 kb on + strand at 478.035 kb on + strand at 478.036 kb on - strand at 478.036 kb on - strand at 478.101 kb on + strand at 478.147 kb on - strand at 478.147 kb on - strand at 478.233 kb on + strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.234 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.254 kb on - strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.535 kb on + strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.536 kb on - strand at 478.861 kb on + strand, within MPMX19_03184 at 478.861 kb on + strand, within MPMX19_03184 at 478.861 kb on + strand, within MPMX19_03184 at 478.862 kb on - strand, within MPMX19_03184 at 478.862 kb on - strand, within MPMX19_03184 at 478.862 kb on - strand, within MPMX19_03184 at 478.862 kb on - strand, within MPMX19_03184 at 478.862 kb on - strand, within MPMX19_03184 at 478.869 kb on + strand, within MPMX19_03184 at 478.869 kb on + strand, within MPMX19_03184 at 478.869 kb on + strand, within MPMX19_03184 at 478.870 kb on - strand, within MPMX19_03184 at 478.870 kb on - strand, within MPMX19_03184 at 478.870 kb on - strand, within MPMX19_03184 at 478.870 kb on - strand, within MPMX19_03184 at 479.041 kb on + strand at 479.041 kb on + strand at 479.041 kb on + strand at 479.041 kb on + strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.042 kb on - strand at 479.066 kb on + strand at 479.066 kb on + strand at 479.067 kb on - strand at 479.067 kb on - strand at 479.099 kb on + strand at 479.099 kb on + strand at 479.099 kb on + strand at 479.099 kb on + strand at 479.100 kb on - strand at 479.100 kb on - strand at 479.100 kb on - strand at 479.100 kb on - strand at 479.100 kb on - strand at 479.102 kb on + strand at 479.102 kb on + strand at 479.103 kb on - strand at 479.103 kb on - strand at 479.103 kb on - strand at 479.103 kb on - strand at 479.103 kb on - strand at 479.103 kb on - strand at 479.114 kb on + strand at 479.114 kb on + strand at 479.115 kb on - strand, within MPMX19_03185 at 479.115 kb on - strand, within MPMX19_03185 at 479.160 kb on + strand, within MPMX19_03185 at 479.160 kb on + strand, within MPMX19_03185 at 479.161 kb on - strand, within MPMX19_03185 at 479.161 kb on - strand, within MPMX19_03185 at 479.161 kb on - strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.214 kb on + strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.215 kb on - strand, within MPMX19_03185 at 479.219 kb on + strand, within MPMX19_03185 at 479.219 kb on + strand, within MPMX19_03185 at 479.219 kb on + strand, within MPMX19_03185 at 479.219 kb on + strand, within MPMX19_03185 at 479.219 kb on + strand, within MPMX19_03185 at 479.219 kb on + strand, within MPMX19_03185 at 479.220 kb on - strand, within MPMX19_03185 at 479.220 kb on - strand, within MPMX19_03185 at 479.279 kb on + strand, within MPMX19_03185 at 479.280 kb on - strand, within MPMX19_03185 at 479.294 kb on + strand, within MPMX19_03185 at 479.294 kb on + strand, within MPMX19_03185 at 479.294 kb on + strand, within MPMX19_03185 at 479.294 kb on + strand, within MPMX19_03185 at 479.294 kb on + strand, within MPMX19_03185 at 479.295 kb on - strand, within MPMX19_03185 at 479.295 kb on - strand, within MPMX19_03185 at 479.295 kb on - strand, within MPMX19_03185 at 479.295 kb on - strand, within MPMX19_03185 at 479.295 kb on - strand, within MPMX19_03185 at 479.391 kb on + strand, within MPMX19_03185 at 479.391 kb on + strand, within MPMX19_03185 at 479.391 kb on + strand, within MPMX19_03185 at 479.391 kb on + strand, within MPMX19_03185 at 479.391 kb on + strand, within MPMX19_03185 at 479.391 kb on + strand, within MPMX19_03185 at 479.392 kb on - strand, within MPMX19_03185 at 479.392 kb on - strand, within MPMX19_03185 at 479.453 kb on + strand, within MPMX19_03185 at 479.453 kb on + strand, within MPMX19_03185 at 479.453 kb on + strand, within MPMX19_03185 at 479.453 kb on + strand, within MPMX19_03185 at 479.453 kb on + strand, within MPMX19_03185 at 479.453 kb on + strand, within MPMX19_03185 at 479.454 kb on - strand, within MPMX19_03185 at 479.454 kb on - strand, within MPMX19_03185 at 479.454 kb on - strand, within MPMX19_03185 at 479.454 kb on - strand, within MPMX19_03185
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 477,410 + MPMX19_03182 0.84 -0.5 477,410 + MPMX19_03182 0.84 +0.5 477,410 + MPMX19_03182 0.84 -0.8 477,411 - MPMX19_03182 0.84 +0.4 477,456 + MPMX19_03182 0.89 +0.0 477,456 + MPMX19_03182 0.89 -0.5 477,456 + MPMX19_03182 0.89 -1.4 477,456 + MPMX19_03182 0.89 -0.9 477,457 - MPMX19_03182 0.89 -0.1 477,457 - MPMX19_03182 0.89 -1.6 477,457 - MPMX19_03182 0.89 -0.8 477,457 - MPMX19_03182 0.89 +0.3 477,465 + -0.8 477,466 - -0.3 477,466 - -0.4 477,573 + -0.5 477,573 + -0.9 477,573 + +0.3 477,574 - +1.3 477,574 - +0.9 477,574 - -1.1 477,575 + -0.8 477,575 + -1.5 477,575 + -0.4 477,575 + +0.4 477,575 + -1.3 477,575 + +0.2 477,575 + +1.0 477,575 + -0.2 477,576 - -0.4 477,576 - +1.1 477,576 - -0.1 477,576 - -1.8 477,576 - -1.5 477,576 - -0.9 477,576 - -1.5 477,576 - +0.8 477,576 - +1.0 477,608 + -0.4 477,608 + +1.3 477,608 + -1.7 477,608 + -0.3 477,609 - -0.7 477,609 - +0.7 477,727 + -0.1 477,760 + -0.5 477,760 + -1.5 477,760 + -0.1 477,760 + +0.0 477,761 - -1.9 477,854 + -0.8 477,854 + +0.4 477,854 + +0.4 477,855 - +1.9 477,855 - +0.3 477,855 - +1.2 477,937 + +0.5 477,937 + -1.6 477,937 + -0.1 477,938 - -0.7 477,938 - -0.9 477,938 - +0.0 477,938 - +0.1 478,035 + +0.4 478,035 + -0.9 478,035 + +1.2 478,035 + +0.2 478,036 - -0.3 478,036 - -0.1 478,101 + -0.6 478,147 - -0.6 478,147 - -0.6 478,233 + +0.9 478,234 - -0.6 478,234 - -2.2 478,234 - +0.9 478,234 - +0.1 478,234 - +0.4 478,234 - -0.1 478,234 - +0.5 478,234 - -0.9 478,234 - +0.2 478,254 - -0.1 478,254 - -0.3 478,254 - -0.7 478,254 - -1.9 478,254 - -1.6 478,535 + +0.3 478,535 + +0.8 478,535 + -0.5 478,535 + -0.6 478,535 + -1.1 478,535 + -0.6 478,535 + -1.4 478,535 + +0.2 478,535 + +0.7 478,535 + -1.8 478,536 - -0.6 478,536 - +0.4 478,536 - -0.9 478,536 - -0.6 478,536 - +0.9 478,536 - -1.5 478,536 - -0.5 478,536 - -0.3 478,536 - -1.4 478,536 - +1.3 478,536 - -1.6 478,536 - -3.1 478,536 - +1.1 478,861 + MPMX19_03184 0.61 -0.9 478,861 + MPMX19_03184 0.61 -1.5 478,861 + MPMX19_03184 0.61 -1.9 478,862 - MPMX19_03184 0.61 +1.5 478,862 - MPMX19_03184 0.61 -0.5 478,862 - MPMX19_03184 0.61 -1.9 478,862 - MPMX19_03184 0.61 +0.7 478,862 - MPMX19_03184 0.61 -0.5 478,869 + MPMX19_03184 0.63 -0.3 478,869 + MPMX19_03184 0.63 +0.6 478,869 + MPMX19_03184 0.63 +0.3 478,870 - MPMX19_03184 0.63 -1.6 478,870 - MPMX19_03184 0.63 +0.1 478,870 - MPMX19_03184 0.63 -1.2 478,870 - MPMX19_03184 0.63 -0.4 479,041 + -0.9 479,041 + +1.0 479,041 + -0.6 479,041 + -0.3 479,042 - -0.5 479,042 - -1.4 479,042 - -0.5 479,042 - -1.6 479,042 - +0.2 479,042 - -0.3 479,042 - -0.5 479,042 - -0.8 479,066 + -1.4 479,066 + -0.3 479,067 - -0.9 479,067 - -0.4 479,099 + -0.7 479,099 + -1.2 479,099 + -2.6 479,099 + -0.1 479,100 - +1.3 479,100 - +0.2 479,100 - +0.6 479,100 - -0.2 479,100 - -1.1 479,102 + -0.3 479,102 + +0.2 479,103 - +0.4 479,103 - -0.6 479,103 - -0.5 479,103 - +2.3 479,103 - -0.5 479,103 - -0.8 479,114 + +0.2 479,114 + -0.5 479,115 - MPMX19_03185 0.10 -0.6 479,115 - MPMX19_03185 0.10 -0.1 479,160 + MPMX19_03185 0.15 -0.5 479,160 + MPMX19_03185 0.15 -0.4 479,161 - MPMX19_03185 0.15 -0.1 479,161 - MPMX19_03185 0.15 -1.0 479,161 - MPMX19_03185 0.15 +1.1 479,214 + MPMX19_03185 0.21 -0.8 479,214 + MPMX19_03185 0.21 -0.8 479,214 + MPMX19_03185 0.21 -1.6 479,214 + MPMX19_03185 0.21 -1.6 479,214 + MPMX19_03185 0.21 -0.4 479,214 + MPMX19_03185 0.21 -0.3 479,214 + MPMX19_03185 0.21 +1.2 479,214 + MPMX19_03185 0.21 +1.5 479,214 + MPMX19_03185 0.21 -1.5 479,214 + MPMX19_03185 0.21 -2.9 479,214 + MPMX19_03185 0.21 -1.6 479,214 + MPMX19_03185 0.21 +0.7 479,215 - MPMX19_03185 0.22 +1.1 479,215 - MPMX19_03185 0.22 +0.3 479,215 - MPMX19_03185 0.22 +0.1 479,215 - MPMX19_03185 0.22 +0.8 479,215 - MPMX19_03185 0.22 +0.5 479,215 - MPMX19_03185 0.22 +0.9 479,215 - MPMX19_03185 0.22 -1.0 479,215 - MPMX19_03185 0.22 +0.5 479,215 - MPMX19_03185 0.22 -0.1 479,215 - MPMX19_03185 0.22 -0.1 479,215 - MPMX19_03185 0.22 +0.4 479,219 + MPMX19_03185 0.22 -0.4 479,219 + MPMX19_03185 0.22 -0.1 479,219 + MPMX19_03185 0.22 -0.2 479,219 + MPMX19_03185 0.22 -0.5 479,219 + MPMX19_03185 0.22 -1.3 479,219 + MPMX19_03185 0.22 -0.4 479,220 - MPMX19_03185 0.22 -0.8 479,220 - MPMX19_03185 0.22 -0.5 479,279 + MPMX19_03185 0.29 -0.9 479,280 - MPMX19_03185 0.29 +0.1 479,294 + MPMX19_03185 0.31 -1.5 479,294 + MPMX19_03185 0.31 +0.8 479,294 + MPMX19_03185 0.31 +0.2 479,294 + MPMX19_03185 0.31 +0.1 479,294 + MPMX19_03185 0.31 -1.3 479,295 - MPMX19_03185 0.31 -0.5 479,295 - MPMX19_03185 0.31 -0.1 479,295 - MPMX19_03185 0.31 +1.0 479,295 - MPMX19_03185 0.31 -1.4 479,295 - MPMX19_03185 0.31 +1.2 479,391 + MPMX19_03185 0.42 -0.1 479,391 + MPMX19_03185 0.42 -0.9 479,391 + MPMX19_03185 0.42 -1.3 479,391 + MPMX19_03185 0.42 -0.5 479,391 + MPMX19_03185 0.42 -0.5 479,391 + MPMX19_03185 0.42 +1.4 479,392 - MPMX19_03185 0.42 -1.6 479,392 - MPMX19_03185 0.42 +0.4 479,453 + MPMX19_03185 0.49 -0.5 479,453 + MPMX19_03185 0.49 -0.1 479,453 + MPMX19_03185 0.49 -1.6 479,453 + MPMX19_03185 0.49 -0.6 479,453 + MPMX19_03185 0.49 -0.1 479,453 + MPMX19_03185 0.49 -0.1 479,454 - MPMX19_03185 0.49 -0.5 479,454 - MPMX19_03185 0.49 -0.1 479,454 - MPMX19_03185 0.49 -0.8 479,454 - MPMX19_03185 0.49 +0.3
Or see this region's nucleotide sequence