Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03048

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03046 and MPMX19_03047 are separated by 173 nucleotidesMPMX19_03047 and MPMX19_03048 are separated by 545 nucleotidesMPMX19_03048 and MPMX19_03049 are separated by 6 nucleotides MPMX19_03046: MPMX19_03046 - hypothetical protein, at 311,667 to 311,819 _03046 MPMX19_03047: MPMX19_03047 - hypothetical protein, at 311,993 to 312,133 _03047 MPMX19_03048: MPMX19_03048 - hypothetical protein, at 312,679 to 313,398 _03048 MPMX19_03049: MPMX19_03049 - putative protease YhbU, at 313,405 to 314,391 _03049 Position (kb) 312 313 314Strain fitness (log2 ratio) -2 -1 0 1 2at 311.994 kb on + strandat 311.994 kb on + strandat 311.995 kb on - strandat 311.995 kb on - strandat 312.129 kb on + strandat 312.129 kb on + strandat 312.129 kb on + strandat 312.130 kb on - strandat 312.151 kb on + strandat 312.152 kb on - strandat 312.292 kb on - strandat 312.301 kb on + strandat 312.301 kb on + strandat 312.301 kb on + strandat 312.302 kb on - strandat 312.331 kb on + strandat 312.331 kb on + strandat 312.331 kb on + strandat 312.332 kb on - strandat 312.332 kb on - strandat 312.332 kb on - strandat 312.332 kb on - strandat 312.332 kb on - strandat 312.362 kb on - strandat 312.533 kb on + strandat 312.534 kb on - strandat 312.534 kb on - strandat 312.534 kb on - strandat 312.534 kb on - strandat 312.534 kb on - strandat 313.030 kb on + strand, within MPMX19_03048at 313.030 kb on + strand, within MPMX19_03048at 313.030 kb on + strand, within MPMX19_03048at 313.030 kb on + strand, within MPMX19_03048at 313.031 kb on - strand, within MPMX19_03048at 313.031 kb on - strand, within MPMX19_03048at 313.031 kb on - strand, within MPMX19_03048at 313.397 kb on - strandat 313.486 kb on + strandat 313.486 kb on + strandat 313.487 kb on - strandat 313.570 kb on + strand, within MPMX19_03049at 313.571 kb on - strand, within MPMX19_03049at 313.571 kb on - strand, within MPMX19_03049at 313.597 kb on + strand, within MPMX19_03049at 313.597 kb on + strand, within MPMX19_03049at 313.597 kb on + strand, within MPMX19_03049at 313.597 kb on + strand, within MPMX19_03049at 313.597 kb on + strand, within MPMX19_03049at 313.597 kb on + strand, within MPMX19_03049at 313.597 kb on + strand, within MPMX19_03049at 313.597 kb on + strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.598 kb on - strand, within MPMX19_03049at 313.615 kb on + strand, within MPMX19_03049at 313.615 kb on + strand, within MPMX19_03049at 313.616 kb on - strand, within MPMX19_03049at 313.718 kb on - strand, within MPMX19_03049at 313.718 kb on - strand, within MPMX19_03049at 313.718 kb on - strand, within MPMX19_03049at 313.798 kb on + strand, within MPMX19_03049at 313.798 kb on + strand, within MPMX19_03049at 313.799 kb on - strand, within MPMX19_03049at 313.954 kb on + strand, within MPMX19_03049at 313.955 kb on - strand, within MPMX19_03049at 313.955 kb on - strand, within MPMX19_03049at 313.955 kb on - strand, within MPMX19_03049at 313.955 kb on - strand, within MPMX19_03049at 313.955 kb on - strand, within MPMX19_03049at 314.095 kb on + strand, within MPMX19_03049at 314.144 kb on - strand, within MPMX19_03049at 314.144 kb on - strand, within MPMX19_03049at 314.251 kb on + strand, within MPMX19_03049at 314.251 kb on + strand, within MPMX19_03049at 314.251 kb on + strand, within MPMX19_03049at 314.251 kb on + strand, within MPMX19_03049at 314.251 kb on + strand, within MPMX19_03049at 314.251 kb on + strand, within MPMX19_03049at 314.251 kb on + strand, within MPMX19_03049at 314.252 kb on - strand, within MPMX19_03049at 314.252 kb on - strand, within MPMX19_03049at 314.252 kb on - strand, within MPMX19_03049at 314.252 kb on - strand, within MPMX19_03049at 314.252 kb on - strand, within MPMX19_03049at 314.252 kb on - strand, within MPMX19_03049at 314.252 kb on - strand, within MPMX19_03049at 314.252 kb on - strand, within MPMX19_03049at 314.252 kb on - strand, within MPMX19_03049at 314.253 kb on + strand, within MPMX19_03049at 314.253 kb on + strand, within MPMX19_03049at 314.276 kb on - strand, within MPMX19_03049at 314.371 kb on + strandat 314.371 kb on + strandat 314.371 kb on + strandat 314.371 kb on + strandat 314.372 kb on - strandat 314.373 kb on + strandat 314.373 kb on + strandat 314.373 kb on + strandat 314.373 kb on + strandat 314.373 kb on + strandat 314.373 kb on + strandat 314.373 kb on + strandat 314.373 kb on + strandat 314.373 kb on + strandat 314.373 kb on + strandat 314.374 kb on - strandat 314.390 kb on - strandat 314.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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311,994 + -0.3
311,994 + -1.4
311,995 - +0.4
311,995 - +0.1
312,129 + -0.0
312,129 + -0.4
312,129 + +0.3
312,130 - +1.8
312,151 + +0.7
312,152 - +1.2
312,292 - -0.7
312,301 + -0.7
312,301 + -1.6
312,301 + -1.7
312,302 - -1.4
312,331 + -0.6
312,331 + +0.8
312,331 + +0.3
312,332 - -0.4
312,332 - -0.2
312,332 - -0.7
312,332 - -0.1
312,332 - -0.3
312,362 - -0.9
312,533 + +1.6
312,534 - +0.1
312,534 - +0.7
312,534 - -0.2
312,534 - +0.7
312,534 - -1.1
313,030 + MPMX19_03048 0.49 -1.6
313,030 + MPMX19_03048 0.49 -0.4
313,030 + MPMX19_03048 0.49 -1.0
313,030 + MPMX19_03048 0.49 -2.1
313,031 - MPMX19_03048 0.49 -2.2
313,031 - MPMX19_03048 0.49 -2.2
313,031 - MPMX19_03048 0.49 -0.2
313,397 - +0.2
313,486 + -0.0
313,486 + -0.1
313,487 - -0.3
313,570 + MPMX19_03049 0.17 -0.4
313,571 - MPMX19_03049 0.17 +0.8
313,571 - MPMX19_03049 0.17 +0.2
313,597 + MPMX19_03049 0.19 -0.3
313,597 + MPMX19_03049 0.19 +0.8
313,597 + MPMX19_03049 0.19 -1.8
313,597 + MPMX19_03049 0.19 -1.0
313,597 + MPMX19_03049 0.19 -0.3
313,597 + MPMX19_03049 0.19 -0.0
313,597 + MPMX19_03049 0.19 -0.0
313,597 + MPMX19_03049 0.19 +0.6
313,598 - MPMX19_03049 0.20 -1.4
313,598 - MPMX19_03049 0.20 +0.1
313,598 - MPMX19_03049 0.20 +0.3
313,598 - MPMX19_03049 0.20 -1.8
313,598 - MPMX19_03049 0.20 -2.1
313,598 - MPMX19_03049 0.20 +1.6
313,598 - MPMX19_03049 0.20 +0.3
313,598 - MPMX19_03049 0.20 +0.1
313,598 - MPMX19_03049 0.20 -0.6
313,598 - MPMX19_03049 0.20 +1.2
313,598 - MPMX19_03049 0.20 -0.1
313,598 - MPMX19_03049 0.20 -0.1
313,598 - MPMX19_03049 0.20 +1.1
313,598 - MPMX19_03049 0.20 +1.2
313,598 - MPMX19_03049 0.20 -1.6
313,598 - MPMX19_03049 0.20 -0.9
313,615 + MPMX19_03049 0.21 -2.1
313,615 + MPMX19_03049 0.21 -0.0
313,616 - MPMX19_03049 0.21 -0.0
313,718 - MPMX19_03049 0.32 +0.6
313,718 - MPMX19_03049 0.32 -0.5
313,718 - MPMX19_03049 0.32 +1.6
313,798 + MPMX19_03049 0.40 -0.9
313,798 + MPMX19_03049 0.40 -1.2
313,799 - MPMX19_03049 0.40 +0.7
313,954 + MPMX19_03049 0.56 -2.3
313,955 - MPMX19_03049 0.56 +0.1
313,955 - MPMX19_03049 0.56 +0.7
313,955 - MPMX19_03049 0.56 -0.4
313,955 - MPMX19_03049 0.56 -0.6
313,955 - MPMX19_03049 0.56 +0.7
314,095 + MPMX19_03049 0.70 +0.7
314,144 - MPMX19_03049 0.75 +0.5
314,144 - MPMX19_03049 0.75 -0.3
314,251 + MPMX19_03049 0.86 -1.0
314,251 + MPMX19_03049 0.86 +1.3
314,251 + MPMX19_03049 0.86 +0.9
314,251 + MPMX19_03049 0.86 +0.9
314,251 + MPMX19_03049 0.86 +0.3
314,251 + MPMX19_03049 0.86 +0.6
314,251 + MPMX19_03049 0.86 -0.9
314,252 - MPMX19_03049 0.86 -1.8
314,252 - MPMX19_03049 0.86 +1.6
314,252 - MPMX19_03049 0.86 -1.2
314,252 - MPMX19_03049 0.86 -0.5
314,252 - MPMX19_03049 0.86 +0.2
314,252 - MPMX19_03049 0.86 +0.6
314,252 - MPMX19_03049 0.86 +0.8
314,252 - MPMX19_03049 0.86 +0.3
314,252 - MPMX19_03049 0.86 +1.0
314,253 + MPMX19_03049 0.86 -0.4
314,253 + MPMX19_03049 0.86 +0.6
314,276 - MPMX19_03049 0.88 -0.0
314,371 + -1.5
314,371 + +0.8
314,371 + -1.1
314,371 + -0.3
314,372 - +0.4
314,373 + -0.8
314,373 + +0.6
314,373 + -0.6
314,373 + -0.4
314,373 + -0.2
314,373 + -0.6
314,373 + -0.4
314,373 + -1.0
314,373 + +0.9
314,373 + -2.3
314,374 - +1.4
314,390 - +1.1
314,390 - -0.2

Or see this region's nucleotide sequence