Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03046 and MPMX19_03047 are separated by 173 nucleotides MPMX19_03047 and MPMX19_03048 are separated by 545 nucleotides MPMX19_03048 and MPMX19_03049 are separated by 6 nucleotides
MPMX19_03046: MPMX19_03046 - hypothetical protein, at 311,667 to 311,819
_03046
MPMX19_03047: MPMX19_03047 - hypothetical protein, at 311,993 to 312,133
_03047
MPMX19_03048: MPMX19_03048 - hypothetical protein, at 312,679 to 313,398
_03048
MPMX19_03049: MPMX19_03049 - putative protease YhbU, at 313,405 to 314,391
_03049
Position (kb)
312
313
314 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 311.994 kb on + strand at 311.994 kb on + strand at 311.995 kb on - strand at 311.995 kb on - strand at 312.129 kb on + strand at 312.129 kb on + strand at 312.129 kb on + strand at 312.130 kb on - strand at 312.151 kb on + strand at 312.152 kb on - strand at 312.292 kb on - strand at 312.301 kb on + strand at 312.301 kb on + strand at 312.301 kb on + strand at 312.302 kb on - strand at 312.331 kb on + strand at 312.331 kb on + strand at 312.331 kb on + strand at 312.332 kb on - strand at 312.332 kb on - strand at 312.332 kb on - strand at 312.332 kb on - strand at 312.332 kb on - strand at 312.362 kb on - strand at 312.533 kb on + strand at 312.534 kb on - strand at 312.534 kb on - strand at 312.534 kb on - strand at 312.534 kb on - strand at 312.534 kb on - strand at 313.030 kb on + strand, within MPMX19_03048 at 313.030 kb on + strand, within MPMX19_03048 at 313.030 kb on + strand, within MPMX19_03048 at 313.030 kb on + strand, within MPMX19_03048 at 313.031 kb on - strand, within MPMX19_03048 at 313.031 kb on - strand, within MPMX19_03048 at 313.031 kb on - strand, within MPMX19_03048 at 313.397 kb on - strand at 313.486 kb on + strand at 313.486 kb on + strand at 313.487 kb on - strand at 313.570 kb on + strand, within MPMX19_03049 at 313.571 kb on - strand, within MPMX19_03049 at 313.571 kb on - strand, within MPMX19_03049 at 313.597 kb on + strand, within MPMX19_03049 at 313.597 kb on + strand, within MPMX19_03049 at 313.597 kb on + strand, within MPMX19_03049 at 313.597 kb on + strand, within MPMX19_03049 at 313.597 kb on + strand, within MPMX19_03049 at 313.597 kb on + strand, within MPMX19_03049 at 313.597 kb on + strand, within MPMX19_03049 at 313.597 kb on + strand, within MPMX19_03049 at 313.598 kb on - strand, within MPMX19_03049 at 313.598 kb on - strand, within MPMX19_03049 at 313.598 kb on - strand, within MPMX19_03049 at 313.598 kb on - strand, within MPMX19_03049 at 313.598 kb on - strand, within MPMX19_03049 at 313.598 kb on - strand, within MPMX19_03049 at 313.598 kb on - strand, within MPMX19_03049 at 313.598 kb on - strand, within MPMX19_03049 at 313.598 kb on - strand, within MPMX19_03049 at 313.598 kb on - strand, within MPMX19_03049 at 313.598 kb on - strand, within MPMX19_03049 at 313.598 kb on - strand, within MPMX19_03049 at 313.598 kb on - strand, within MPMX19_03049 at 313.598 kb on - strand, within MPMX19_03049 at 313.598 kb on - strand, within MPMX19_03049 at 313.598 kb on - strand, within MPMX19_03049 at 313.615 kb on + strand, within MPMX19_03049 at 313.615 kb on + strand, within MPMX19_03049 at 313.616 kb on - strand, within MPMX19_03049 at 313.718 kb on - strand, within MPMX19_03049 at 313.718 kb on - strand, within MPMX19_03049 at 313.718 kb on - strand, within MPMX19_03049 at 313.798 kb on + strand, within MPMX19_03049 at 313.798 kb on + strand, within MPMX19_03049 at 313.799 kb on - strand, within MPMX19_03049 at 313.954 kb on + strand, within MPMX19_03049 at 313.955 kb on - strand, within MPMX19_03049 at 313.955 kb on - strand, within MPMX19_03049 at 313.955 kb on - strand, within MPMX19_03049 at 313.955 kb on - strand, within MPMX19_03049 at 313.955 kb on - strand, within MPMX19_03049 at 314.095 kb on + strand, within MPMX19_03049 at 314.144 kb on - strand, within MPMX19_03049 at 314.144 kb on - strand, within MPMX19_03049 at 314.251 kb on + strand, within MPMX19_03049 at 314.251 kb on + strand, within MPMX19_03049 at 314.251 kb on + strand, within MPMX19_03049 at 314.251 kb on + strand, within MPMX19_03049 at 314.251 kb on + strand, within MPMX19_03049 at 314.251 kb on + strand, within MPMX19_03049 at 314.251 kb on + strand, within MPMX19_03049 at 314.252 kb on - strand, within MPMX19_03049 at 314.252 kb on - strand, within MPMX19_03049 at 314.252 kb on - strand, within MPMX19_03049 at 314.252 kb on - strand, within MPMX19_03049 at 314.252 kb on - strand, within MPMX19_03049 at 314.252 kb on - strand, within MPMX19_03049 at 314.252 kb on - strand, within MPMX19_03049 at 314.252 kb on - strand, within MPMX19_03049 at 314.252 kb on - strand, within MPMX19_03049 at 314.253 kb on + strand, within MPMX19_03049 at 314.253 kb on + strand, within MPMX19_03049 at 314.276 kb on - strand, within MPMX19_03049 at 314.371 kb on + strand at 314.371 kb on + strand at 314.371 kb on + strand at 314.371 kb on + strand at 314.372 kb on - strand at 314.373 kb on + strand at 314.373 kb on + strand at 314.373 kb on + strand at 314.373 kb on + strand at 314.373 kb on + strand at 314.373 kb on + strand at 314.373 kb on + strand at 314.373 kb on + strand at 314.373 kb on + strand at 314.373 kb on + strand at 314.374 kb on - strand at 314.390 kb on - strand at 314.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 311,994 + -0.3 311,994 + -1.4 311,995 - +0.4 311,995 - +0.1 312,129 + -0.0 312,129 + -0.4 312,129 + +0.3 312,130 - +1.8 312,151 + +0.7 312,152 - +1.2 312,292 - -0.7 312,301 + -0.7 312,301 + -1.6 312,301 + -1.7 312,302 - -1.4 312,331 + -0.6 312,331 + +0.8 312,331 + +0.3 312,332 - -0.4 312,332 - -0.2 312,332 - -0.7 312,332 - -0.1 312,332 - -0.3 312,362 - -0.9 312,533 + +1.6 312,534 - +0.1 312,534 - +0.7 312,534 - -0.2 312,534 - +0.7 312,534 - -1.1 313,030 + MPMX19_03048 0.49 -1.6 313,030 + MPMX19_03048 0.49 -0.4 313,030 + MPMX19_03048 0.49 -1.0 313,030 + MPMX19_03048 0.49 -2.1 313,031 - MPMX19_03048 0.49 -2.2 313,031 - MPMX19_03048 0.49 -2.2 313,031 - MPMX19_03048 0.49 -0.2 313,397 - +0.2 313,486 + -0.0 313,486 + -0.1 313,487 - -0.3 313,570 + MPMX19_03049 0.17 -0.4 313,571 - MPMX19_03049 0.17 +0.8 313,571 - MPMX19_03049 0.17 +0.2 313,597 + MPMX19_03049 0.19 -0.3 313,597 + MPMX19_03049 0.19 +0.8 313,597 + MPMX19_03049 0.19 -1.8 313,597 + MPMX19_03049 0.19 -1.0 313,597 + MPMX19_03049 0.19 -0.3 313,597 + MPMX19_03049 0.19 -0.0 313,597 + MPMX19_03049 0.19 -0.0 313,597 + MPMX19_03049 0.19 +0.6 313,598 - MPMX19_03049 0.20 -1.4 313,598 - MPMX19_03049 0.20 +0.1 313,598 - MPMX19_03049 0.20 +0.3 313,598 - MPMX19_03049 0.20 -1.8 313,598 - MPMX19_03049 0.20 -2.1 313,598 - MPMX19_03049 0.20 +1.6 313,598 - MPMX19_03049 0.20 +0.3 313,598 - MPMX19_03049 0.20 +0.1 313,598 - MPMX19_03049 0.20 -0.6 313,598 - MPMX19_03049 0.20 +1.2 313,598 - MPMX19_03049 0.20 -0.1 313,598 - MPMX19_03049 0.20 -0.1 313,598 - MPMX19_03049 0.20 +1.1 313,598 - MPMX19_03049 0.20 +1.2 313,598 - MPMX19_03049 0.20 -1.6 313,598 - MPMX19_03049 0.20 -0.9 313,615 + MPMX19_03049 0.21 -2.1 313,615 + MPMX19_03049 0.21 -0.0 313,616 - MPMX19_03049 0.21 -0.0 313,718 - MPMX19_03049 0.32 +0.6 313,718 - MPMX19_03049 0.32 -0.5 313,718 - MPMX19_03049 0.32 +1.6 313,798 + MPMX19_03049 0.40 -0.9 313,798 + MPMX19_03049 0.40 -1.2 313,799 - MPMX19_03049 0.40 +0.7 313,954 + MPMX19_03049 0.56 -2.3 313,955 - MPMX19_03049 0.56 +0.1 313,955 - MPMX19_03049 0.56 +0.7 313,955 - MPMX19_03049 0.56 -0.4 313,955 - MPMX19_03049 0.56 -0.6 313,955 - MPMX19_03049 0.56 +0.7 314,095 + MPMX19_03049 0.70 +0.7 314,144 - MPMX19_03049 0.75 +0.5 314,144 - MPMX19_03049 0.75 -0.3 314,251 + MPMX19_03049 0.86 -1.0 314,251 + MPMX19_03049 0.86 +1.3 314,251 + MPMX19_03049 0.86 +0.9 314,251 + MPMX19_03049 0.86 +0.9 314,251 + MPMX19_03049 0.86 +0.3 314,251 + MPMX19_03049 0.86 +0.6 314,251 + MPMX19_03049 0.86 -0.9 314,252 - MPMX19_03049 0.86 -1.8 314,252 - MPMX19_03049 0.86 +1.6 314,252 - MPMX19_03049 0.86 -1.2 314,252 - MPMX19_03049 0.86 -0.5 314,252 - MPMX19_03049 0.86 +0.2 314,252 - MPMX19_03049 0.86 +0.6 314,252 - MPMX19_03049 0.86 +0.8 314,252 - MPMX19_03049 0.86 +0.3 314,252 - MPMX19_03049 0.86 +1.0 314,253 + MPMX19_03049 0.86 -0.4 314,253 + MPMX19_03049 0.86 +0.6 314,276 - MPMX19_03049 0.88 -0.0 314,371 + -1.5 314,371 + +0.8 314,371 + -1.1 314,371 + -0.3 314,372 - +0.4 314,373 + -0.8 314,373 + +0.6 314,373 + -0.6 314,373 + -0.4 314,373 + -0.2 314,373 + -0.6 314,373 + -0.4 314,373 + -1.0 314,373 + +0.9 314,373 + -2.3 314,374 - +1.4 314,390 - +1.1 314,390 - -0.2
Or see this region's nucleotide sequence