Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02859

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02858 and MPMX19_02859 are separated by 229 nucleotidesMPMX19_02859 and MPMX19_02860 are separated by 162 nucleotidesMPMX19_02860 and MPMX19_02861 are separated by 136 nucleotides MPMX19_02858: MPMX19_02858 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 102,353 to 103,183 _02858 MPMX19_02859: MPMX19_02859 - L-asparaginase 2, at 103,413 to 104,522 _02859 MPMX19_02860: MPMX19_02860 - hypothetical protein, at 104,685 to 105,251 _02860 MPMX19_02861: MPMX19_02861 - hypothetical protein, at 105,388 to 106,071 _02861 Position (kb) 103 104 105Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 102.596 kb on + strand, within MPMX19_02858at 102.727 kb on + strand, within MPMX19_02858at 102.728 kb on - strand, within MPMX19_02858at 102.782 kb on + strand, within MPMX19_02858at 102.782 kb on + strand, within MPMX19_02858at 102.782 kb on + strand, within MPMX19_02858at 102.782 kb on + strand, within MPMX19_02858at 102.783 kb on - strand, within MPMX19_02858at 102.783 kb on - strand, within MPMX19_02858at 102.783 kb on - strand, within MPMX19_02858at 102.783 kb on - strand, within MPMX19_02858at 102.783 kb on - strand, within MPMX19_02858at 102.783 kb on - strand, within MPMX19_02858at 102.941 kb on + strand, within MPMX19_02858at 102.941 kb on + strand, within MPMX19_02858at 102.941 kb on + strand, within MPMX19_02858at 102.941 kb on + strand, within MPMX19_02858at 102.941 kb on + strand, within MPMX19_02858at 102.941 kb on + strand, within MPMX19_02858at 102.942 kb on - strand, within MPMX19_02858at 102.942 kb on - strand, within MPMX19_02858at 102.942 kb on - strand, within MPMX19_02858at 102.942 kb on - strand, within MPMX19_02858at 103.325 kb on + strandat 103.386 kb on + strandat 103.387 kb on - strandat 103.608 kb on + strand, within MPMX19_02859at 103.609 kb on - strand, within MPMX19_02859at 103.831 kb on - strand, within MPMX19_02859at 103.831 kb on - strand, within MPMX19_02859at 103.929 kb on + strand, within MPMX19_02859at 103.929 kb on + strand, within MPMX19_02859at 103.930 kb on - strand, within MPMX19_02859at 103.930 kb on - strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.083 kb on - strand, within MPMX19_02859at 104.083 kb on - strand, within MPMX19_02859at 104.083 kb on - strand, within MPMX19_02859at 104.083 kb on - strand, within MPMX19_02859at 104.083 kb on - strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.110 kb on - strand, within MPMX19_02859at 104.110 kb on - strand, within MPMX19_02859at 104.110 kb on - strand, within MPMX19_02859at 104.110 kb on - strand, within MPMX19_02859at 104.110 kb on - strand, within MPMX19_02859at 104.193 kb on + strand, within MPMX19_02859at 104.193 kb on + strand, within MPMX19_02859at 104.193 kb on + strand, within MPMX19_02859at 104.193 kb on + strand, within MPMX19_02859at 104.193 kb on + strand, within MPMX19_02859at 104.193 kb on + strand, within MPMX19_02859at 104.193 kb on + strand, within MPMX19_02859at 104.193 kb on + strand, within MPMX19_02859at 104.193 kb on + strand, within MPMX19_02859at 104.194 kb on - strand, within MPMX19_02859at 104.194 kb on - strand, within MPMX19_02859at 104.194 kb on - strand, within MPMX19_02859at 104.194 kb on - strand, within MPMX19_02859at 104.194 kb on - strand, within MPMX19_02859at 104.199 kb on + strand, within MPMX19_02859at 104.199 kb on + strand, within MPMX19_02859at 104.200 kb on - strand, within MPMX19_02859at 104.200 kb on - strand, within MPMX19_02859at 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.512 kb on - strandat 104.512 kb on - strandat 104.512 kb on - strandat 104.512 kb on - strandat 104.512 kb on - strandat 104.512 kb on - strandat 104.512 kb on - strandat 104.512 kb on - strandat 104.517 kb on + strandat 104.517 kb on + strandat 104.517 kb on + strandat 104.517 kb on + strandat 104.517 kb on + strandat 104.518 kb on - strandat 104.518 kb on - strandat 104.518 kb on - strandat 104.518 kb on - strandat 104.518 kb on - strandat 104.518 kb on - strandat 104.518 kb on - strandat 104.518 kb on - strandat 104.518 kb on - strandat 104.755 kb on + strand, within MPMX19_02860at 104.755 kb on + strand, within MPMX19_02860at 104.755 kb on + strand, within MPMX19_02860at 104.755 kb on + strand, within MPMX19_02860at 104.755 kb on + strand, within MPMX19_02860at 104.756 kb on - strand, within MPMX19_02860at 104.756 kb on - strand, within MPMX19_02860at 104.756 kb on - strand, within MPMX19_02860at 104.756 kb on - strand, within MPMX19_02860at 104.756 kb on - strand, within MPMX19_02860at 105.275 kb on - strandat 105.338 kb on + strandat 105.338 kb on + strandat 105.338 kb on + strandat 105.410 kb on - strandat 105.479 kb on + strand, within MPMX19_02861at 105.479 kb on + strand, within MPMX19_02861at 105.479 kb on + strand, within MPMX19_02861at 105.479 kb on + strand, within MPMX19_02861at 105.479 kb on + strand, within MPMX19_02861at 105.479 kb on + strand, within MPMX19_02861at 105.480 kb on - strand, within MPMX19_02861at 105.480 kb on - strand, within MPMX19_02861at 105.480 kb on - strand, within MPMX19_02861at 105.480 kb on - strand, within MPMX19_02861at 105.480 kb on - strand, within MPMX19_02861at 105.480 kb on - strand, within MPMX19_02861

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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102,596 + MPMX19_02858 0.29 -2.1
102,727 + MPMX19_02858 0.45 -2.0
102,728 - MPMX19_02858 0.45 -0.7
102,782 + MPMX19_02858 0.52 -0.9
102,782 + MPMX19_02858 0.52 -1.2
102,782 + MPMX19_02858 0.52 -0.7
102,782 + MPMX19_02858 0.52 +0.6
102,783 - MPMX19_02858 0.52 +0.5
102,783 - MPMX19_02858 0.52 -0.0
102,783 - MPMX19_02858 0.52 -0.2
102,783 - MPMX19_02858 0.52 +0.8
102,783 - MPMX19_02858 0.52 -1.0
102,783 - MPMX19_02858 0.52 -0.4
102,941 + MPMX19_02858 0.71 +1.0
102,941 + MPMX19_02858 0.71 +0.3
102,941 + MPMX19_02858 0.71 -1.3
102,941 + MPMX19_02858 0.71 +0.4
102,941 + MPMX19_02858 0.71 +0.3
102,941 + MPMX19_02858 0.71 -0.4
102,942 - MPMX19_02858 0.71 -0.3
102,942 - MPMX19_02858 0.71 -1.4
102,942 - MPMX19_02858 0.71 -2.8
102,942 - MPMX19_02858 0.71 -0.6
103,325 + -0.7
103,386 + -0.4
103,387 - -1.3
103,608 + MPMX19_02859 0.18 +0.7
103,609 - MPMX19_02859 0.18 -1.7
103,831 - MPMX19_02859 0.38 -1.1
103,831 - MPMX19_02859 0.38 +0.9
103,929 + MPMX19_02859 0.46 +0.4
103,929 + MPMX19_02859 0.46 +0.7
103,930 - MPMX19_02859 0.47 -0.4
103,930 - MPMX19_02859 0.47 +0.3
104,082 + MPMX19_02859 0.60 +0.6
104,082 + MPMX19_02859 0.60 -0.7
104,082 + MPMX19_02859 0.60 -0.6
104,082 + MPMX19_02859 0.60 +1.9
104,082 + MPMX19_02859 0.60 -0.7
104,082 + MPMX19_02859 0.60 -0.3
104,082 + MPMX19_02859 0.60 +0.1
104,082 + MPMX19_02859 0.60 +1.1
104,082 + MPMX19_02859 0.60 -0.3
104,083 - MPMX19_02859 0.60 -0.7
104,083 - MPMX19_02859 0.60 -0.1
104,083 - MPMX19_02859 0.60 -0.6
104,083 - MPMX19_02859 0.60 -0.1
104,083 - MPMX19_02859 0.60 -1.7
104,084 + MPMX19_02859 0.60 -1.0
104,084 + MPMX19_02859 0.60 -0.5
104,084 + MPMX19_02859 0.60 +0.6
104,084 + MPMX19_02859 0.60 -1.0
104,084 + MPMX19_02859 0.60 -0.3
104,084 + MPMX19_02859 0.60 +0.3
104,084 + MPMX19_02859 0.60 -0.2
104,084 + MPMX19_02859 0.60 -0.8
104,084 + MPMX19_02859 0.60 +0.0
104,085 - MPMX19_02859 0.61 -1.0
104,085 - MPMX19_02859 0.61 -0.3
104,085 - MPMX19_02859 0.61 +1.6
104,085 - MPMX19_02859 0.61 -0.3
104,085 - MPMX19_02859 0.61 -1.6
104,085 - MPMX19_02859 0.61 +1.6
104,085 - MPMX19_02859 0.61 -0.2
104,085 - MPMX19_02859 0.61 -0.1
104,085 - MPMX19_02859 0.61 +1.9
104,085 - MPMX19_02859 0.61 +1.7
104,085 - MPMX19_02859 0.61 -0.2
104,085 - MPMX19_02859 0.61 +0.4
104,085 - MPMX19_02859 0.61 -0.0
104,085 - MPMX19_02859 0.61 +1.2
104,085 - MPMX19_02859 0.61 +1.3
104,085 - MPMX19_02859 0.61 -0.2
104,085 - MPMX19_02859 0.61 -1.4
104,109 + MPMX19_02859 0.63 -0.3
104,109 + MPMX19_02859 0.63 -2.0
104,109 + MPMX19_02859 0.63 -2.2
104,109 + MPMX19_02859 0.63 -1.5
104,109 + MPMX19_02859 0.63 +1.1
104,109 + MPMX19_02859 0.63 -0.5
104,109 + MPMX19_02859 0.63 -0.0
104,110 - MPMX19_02859 0.63 +0.3
104,110 - MPMX19_02859 0.63 +0.8
104,110 - MPMX19_02859 0.63 -1.4
104,110 - MPMX19_02859 0.63 -0.2
104,110 - MPMX19_02859 0.63 -1.1
104,193 + MPMX19_02859 0.70 -0.7
104,193 + MPMX19_02859 0.70 +0.7
104,193 + MPMX19_02859 0.70 -0.0
104,193 + MPMX19_02859 0.70 -1.2
104,193 + MPMX19_02859 0.70 -0.7
104,193 + MPMX19_02859 0.70 +0.1
104,193 + MPMX19_02859 0.70 -0.6
104,193 + MPMX19_02859 0.70 -0.7
104,193 + MPMX19_02859 0.70 -1.2
104,194 - MPMX19_02859 0.70 +0.8
104,194 - MPMX19_02859 0.70 -0.1
104,194 - MPMX19_02859 0.70 -1.4
104,194 - MPMX19_02859 0.70 -1.9
104,194 - MPMX19_02859 0.70 -0.1
104,199 + MPMX19_02859 0.71 -1.7
104,199 + MPMX19_02859 0.71 +0.1
104,200 - MPMX19_02859 0.71 +1.4
104,200 - MPMX19_02859 0.71 +0.1
104,511 + +0.8
104,511 + +0.2
104,511 + -0.2
104,511 + +0.0
104,511 + -1.0
104,511 + +1.9
104,511 + -0.7
104,511 + +0.3
104,511 + +0.1
104,511 + -0.4
104,511 + -0.7
104,511 + -0.2
104,512 - -1.7
104,512 - -0.0
104,512 - -0.2
104,512 - -0.7
104,512 - +0.5
104,512 - +0.1
104,512 - +0.6
104,512 - +0.4
104,517 + +0.2
104,517 + +0.2
104,517 + -0.6
104,517 + -0.6
104,517 + +0.8
104,518 - +0.4
104,518 - -0.9
104,518 - -0.7
104,518 - -0.1
104,518 - -0.1
104,518 - +0.1
104,518 - +0.8
104,518 - -0.1
104,518 - -0.7
104,755 + MPMX19_02860 0.12 +1.2
104,755 + MPMX19_02860 0.12 -1.2
104,755 + MPMX19_02860 0.12 +1.6
104,755 + MPMX19_02860 0.12 +0.6
104,755 + MPMX19_02860 0.12 +0.1
104,756 - MPMX19_02860 0.13 +0.4
104,756 - MPMX19_02860 0.13 -0.9
104,756 - MPMX19_02860 0.13 +2.1
104,756 - MPMX19_02860 0.13 -1.7
104,756 - MPMX19_02860 0.13 -0.2
105,275 - -0.2
105,338 + -1.0
105,338 + -0.0
105,338 + -0.4
105,410 - +0.6
105,479 + MPMX19_02861 0.13 -0.2
105,479 + MPMX19_02861 0.13 -1.4
105,479 + MPMX19_02861 0.13 -1.1
105,479 + MPMX19_02861 0.13 -0.7
105,479 + MPMX19_02861 0.13 +2.4
105,479 + MPMX19_02861 0.13 -1.6
105,480 - MPMX19_02861 0.13 -2.6
105,480 - MPMX19_02861 0.13 +1.1
105,480 - MPMX19_02861 0.13 -2.3
105,480 - MPMX19_02861 0.13 -1.4
105,480 - MPMX19_02861 0.13 +0.0
105,480 - MPMX19_02861 0.13 -0.7

Or see this region's nucleotide sequence