Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02853

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02852 and MPMX19_02853 are separated by 137 nucleotidesMPMX19_02853 and MPMX19_02854 overlap by 4 nucleotides MPMX19_02852: MPMX19_02852 - hypothetical protein, at 94,270 to 95,355 _02852 MPMX19_02853: MPMX19_02853 - Gluconate 2-dehydrogenase cytochrome c subunit, at 95,493 to 96,746 _02853 MPMX19_02854: MPMX19_02854 - Gluconate 2-dehydrogenase flavoprotein, at 96,743 to 98,515 _02854 Position (kb) 95 96 97Strain fitness (log2 ratio) -2 -1 0 1 2at 95.033 kb on + strand, within MPMX19_02852at 95.033 kb on + strand, within MPMX19_02852at 95.033 kb on + strand, within MPMX19_02852at 95.034 kb on - strand, within MPMX19_02852at 95.034 kb on - strand, within MPMX19_02852at 95.034 kb on - strand, within MPMX19_02852at 95.034 kb on - strand, within MPMX19_02852at 95.120 kb on + strand, within MPMX19_02852at 95.121 kb on - strand, within MPMX19_02852at 95.581 kb on + strandat 95.581 kb on + strandat 95.581 kb on + strandat 95.581 kb on + strandat 95.581 kb on + strandat 95.581 kb on + strandat 95.581 kb on + strandat 95.581 kb on + strandat 95.581 kb on + strandat 95.581 kb on + strandat 95.581 kb on + strandat 95.581 kb on + strandat 95.581 kb on + strandat 95.581 kb on + strandat 95.581 kb on + strandat 95.582 kb on - strandat 95.582 kb on - strandat 95.582 kb on - strandat 95.582 kb on - strandat 95.582 kb on - strandat 95.582 kb on - strandat 95.582 kb on - strandat 95.582 kb on - strandat 95.582 kb on - strandat 95.582 kb on - strandat 95.582 kb on - strandat 95.582 kb on - strandat 95.807 kb on + strand, within MPMX19_02853at 95.807 kb on + strand, within MPMX19_02853at 95.808 kb on - strand, within MPMX19_02853at 95.808 kb on - strand, within MPMX19_02853at 95.810 kb on - strand, within MPMX19_02853at 95.810 kb on - strand, within MPMX19_02853at 95.810 kb on - strand, within MPMX19_02853at 95.810 kb on - strand, within MPMX19_02853at 95.810 kb on - strand, within MPMX19_02853at 95.896 kb on + strand, within MPMX19_02853at 95.896 kb on + strand, within MPMX19_02853at 95.896 kb on + strand, within MPMX19_02853at 95.896 kb on + strand, within MPMX19_02853at 95.896 kb on + strand, within MPMX19_02853at 95.896 kb on + strand, within MPMX19_02853at 95.897 kb on - strand, within MPMX19_02853at 95.897 kb on - strand, within MPMX19_02853at 95.897 kb on - strand, within MPMX19_02853at 95.897 kb on - strand, within MPMX19_02853at 96.007 kb on + strand, within MPMX19_02853at 96.008 kb on - strand, within MPMX19_02853at 96.076 kb on + strand, within MPMX19_02853at 96.076 kb on + strand, within MPMX19_02853at 96.077 kb on - strand, within MPMX19_02853at 96.077 kb on - strand, within MPMX19_02853at 96.077 kb on - strand, within MPMX19_02853at 96.077 kb on - strand, within MPMX19_02853at 96.077 kb on - strand, within MPMX19_02853at 96.077 kb on - strand, within MPMX19_02853at 96.087 kb on + strand, within MPMX19_02853at 96.087 kb on + strand, within MPMX19_02853at 96.087 kb on + strand, within MPMX19_02853at 96.088 kb on - strand, within MPMX19_02853at 96.088 kb on - strand, within MPMX19_02853at 96.088 kb on - strand, within MPMX19_02853at 96.088 kb on - strand, within MPMX19_02853at 96.088 kb on - strand, within MPMX19_02853at 96.184 kb on + strand, within MPMX19_02853at 96.185 kb on - strand, within MPMX19_02853at 96.185 kb on - strand, within MPMX19_02853at 96.185 kb on - strand, within MPMX19_02853at 96.185 kb on - strand, within MPMX19_02853at 96.185 kb on - strand, within MPMX19_02853at 96.346 kb on + strand, within MPMX19_02853at 96.346 kb on + strand, within MPMX19_02853at 96.346 kb on + strand, within MPMX19_02853at 96.389 kb on - strand, within MPMX19_02853at 96.397 kb on + strand, within MPMX19_02853at 96.412 kb on + strand, within MPMX19_02853at 96.412 kb on + strand, within MPMX19_02853at 96.413 kb on - strand, within MPMX19_02853at 96.562 kb on + strand, within MPMX19_02853at 96.562 kb on + strand, within MPMX19_02853at 96.563 kb on - strand, within MPMX19_02853at 96.563 kb on - strand, within MPMX19_02853at 96.563 kb on - strand, within MPMX19_02853at 96.619 kb on + strand, within MPMX19_02853at 96.619 kb on + strand, within MPMX19_02853at 96.619 kb on + strand, within MPMX19_02853at 96.619 kb on + strand, within MPMX19_02853at 96.619 kb on + strand, within MPMX19_02853at 96.620 kb on - strand, within MPMX19_02853at 96.620 kb on - strand, within MPMX19_02853at 96.620 kb on - strand, within MPMX19_02853at 96.778 kb on - strandat 96.778 kb on - strandat 96.979 kb on - strand, within MPMX19_02854at 97.012 kb on - strand, within MPMX19_02854at 97.071 kb on + strand, within MPMX19_02854at 97.071 kb on + strand, within MPMX19_02854at 97.071 kb on + strand, within MPMX19_02854at 97.071 kb on + strand, within MPMX19_02854at 97.071 kb on + strand, within MPMX19_02854at 97.071 kb on + strand, within MPMX19_02854at 97.071 kb on + strand, within MPMX19_02854at 97.071 kb on + strand, within MPMX19_02854at 97.072 kb on - strand, within MPMX19_02854at 97.072 kb on - strand, within MPMX19_02854at 97.146 kb on + strand, within MPMX19_02854at 97.146 kb on + strand, within MPMX19_02854at 97.146 kb on + strand, within MPMX19_02854at 97.147 kb on - strand, within MPMX19_02854at 97.147 kb on - strand, within MPMX19_02854at 97.185 kb on + strand, within MPMX19_02854at 97.185 kb on + strand, within MPMX19_02854at 97.185 kb on + strand, within MPMX19_02854at 97.186 kb on - strand, within MPMX19_02854at 97.224 kb on + strand, within MPMX19_02854at 97.224 kb on + strand, within MPMX19_02854at 97.224 kb on + strand, within MPMX19_02854at 97.224 kb on + strand, within MPMX19_02854at 97.224 kb on + strand, within MPMX19_02854at 97.224 kb on + strand, within MPMX19_02854at 97.224 kb on + strand, within MPMX19_02854at 97.224 kb on + strand, within MPMX19_02854at 97.224 kb on + strand, within MPMX19_02854at 97.224 kb on + strand, within MPMX19_02854at 97.224 kb on + strand, within MPMX19_02854at 97.224 kb on + strand, within MPMX19_02854at 97.224 kb on + strand, within MPMX19_02854at 97.224 kb on + strand, within MPMX19_02854at 97.224 kb on + strand, within MPMX19_02854at 97.224 kb on + strand, within MPMX19_02854at 97.224 kb on + strand, within MPMX19_02854at 97.224 kb on + strand, within MPMX19_02854at 97.225 kb on - strand, within MPMX19_02854at 97.225 kb on - strand, within MPMX19_02854at 97.225 kb on - strand, within MPMX19_02854at 97.225 kb on - strand, within MPMX19_02854at 97.225 kb on - strand, within MPMX19_02854at 97.225 kb on - strand, within MPMX19_02854at 97.225 kb on - strand, within MPMX19_02854at 97.225 kb on - strand, within MPMX19_02854at 97.225 kb on - strand, within MPMX19_02854at 97.225 kb on - strand, within MPMX19_02854at 97.225 kb on - strand, within MPMX19_02854at 97.225 kb on - strand, within MPMX19_02854at 97.225 kb on - strand, within MPMX19_02854at 97.225 kb on - strand, within MPMX19_02854at 97.434 kb on + strand, within MPMX19_02854at 97.434 kb on + strand, within MPMX19_02854at 97.435 kb on - strand, within MPMX19_02854at 97.435 kb on - strand, within MPMX19_02854at 97.480 kb on - strand, within MPMX19_02854at 97.480 kb on - strand, within MPMX19_02854at 97.524 kb on + strand, within MPMX19_02854at 97.525 kb on - strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.636 kb on - strand, within MPMX19_02854at 97.636 kb on - strand, within MPMX19_02854at 97.636 kb on - strand, within MPMX19_02854at 97.636 kb on - strand, within MPMX19_02854at 97.636 kb on - strand, within MPMX19_02854at 97.636 kb on - strand, within MPMX19_02854at 97.636 kb on - strand, within MPMX19_02854at 97.636 kb on - strand, within MPMX19_02854

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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95,033 + MPMX19_02852 0.70 -0.7
95,033 + MPMX19_02852 0.70 +0.4
95,033 + MPMX19_02852 0.70 -0.5
95,034 - MPMX19_02852 0.70 -2.5
95,034 - MPMX19_02852 0.70 -0.7
95,034 - MPMX19_02852 0.70 -0.1
95,034 - MPMX19_02852 0.70 -0.3
95,120 + MPMX19_02852 0.78 -1.1
95,121 - MPMX19_02852 0.78 -0.4
95,581 + -1.7
95,581 + -0.5
95,581 + +0.1
95,581 + -0.0
95,581 + +1.2
95,581 + -0.3
95,581 + -0.4
95,581 + -1.1
95,581 + -1.6
95,581 + -0.4
95,581 + -0.5
95,581 + +0.4
95,581 + -0.8
95,581 + +0.6
95,581 + -1.0
95,582 - -0.7
95,582 - -0.7
95,582 - +0.6
95,582 - +0.1
95,582 - -1.0
95,582 - -0.9
95,582 - +1.0
95,582 - +0.5
95,582 - -0.3
95,582 - -0.2
95,582 - +0.6
95,582 - -0.3
95,807 + MPMX19_02853 0.25 +0.7
95,807 + MPMX19_02853 0.25 +0.4
95,808 - MPMX19_02853 0.25 +0.4
95,808 - MPMX19_02853 0.25 -0.1
95,810 - MPMX19_02853 0.25 +0.3
95,810 - MPMX19_02853 0.25 -0.2
95,810 - MPMX19_02853 0.25 -1.2
95,810 - MPMX19_02853 0.25 -1.2
95,810 - MPMX19_02853 0.25 -0.6
95,896 + MPMX19_02853 0.32 +0.4
95,896 + MPMX19_02853 0.32 +0.9
95,896 + MPMX19_02853 0.32 +1.0
95,896 + MPMX19_02853 0.32 +1.0
95,896 + MPMX19_02853 0.32 +0.7
95,896 + MPMX19_02853 0.32 +0.6
95,897 - MPMX19_02853 0.32 +0.4
95,897 - MPMX19_02853 0.32 -1.7
95,897 - MPMX19_02853 0.32 +0.6
95,897 - MPMX19_02853 0.32 -0.2
96,007 + MPMX19_02853 0.41 -0.3
96,008 - MPMX19_02853 0.41 -0.1
96,076 + MPMX19_02853 0.46 +0.1
96,076 + MPMX19_02853 0.46 -0.1
96,077 - MPMX19_02853 0.47 +0.4
96,077 - MPMX19_02853 0.47 -0.3
96,077 - MPMX19_02853 0.47 -0.5
96,077 - MPMX19_02853 0.47 -0.3
96,077 - MPMX19_02853 0.47 +0.2
96,077 - MPMX19_02853 0.47 -0.9
96,087 + MPMX19_02853 0.47 +0.4
96,087 + MPMX19_02853 0.47 +0.4
96,087 + MPMX19_02853 0.47 +0.5
96,088 - MPMX19_02853 0.47 -0.0
96,088 - MPMX19_02853 0.47 +0.6
96,088 - MPMX19_02853 0.47 +1.3
96,088 - MPMX19_02853 0.47 +0.4
96,088 - MPMX19_02853 0.47 -1.9
96,184 + MPMX19_02853 0.55 -1.4
96,185 - MPMX19_02853 0.55 -0.4
96,185 - MPMX19_02853 0.55 +0.9
96,185 - MPMX19_02853 0.55 +0.7
96,185 - MPMX19_02853 0.55 +1.0
96,185 - MPMX19_02853 0.55 -1.7
96,346 + MPMX19_02853 0.68 -1.9
96,346 + MPMX19_02853 0.68 -1.5
96,346 + MPMX19_02853 0.68 +0.1
96,389 - MPMX19_02853 0.71 +0.6
96,397 + MPMX19_02853 0.72 -0.0
96,412 + MPMX19_02853 0.73 +0.2
96,412 + MPMX19_02853 0.73 +1.3
96,413 - MPMX19_02853 0.73 -1.6
96,562 + MPMX19_02853 0.85 +0.5
96,562 + MPMX19_02853 0.85 -0.1
96,563 - MPMX19_02853 0.85 +0.6
96,563 - MPMX19_02853 0.85 -0.0
96,563 - MPMX19_02853 0.85 -0.0
96,619 + MPMX19_02853 0.90 -0.3
96,619 + MPMX19_02853 0.90 -0.3
96,619 + MPMX19_02853 0.90 +0.2
96,619 + MPMX19_02853 0.90 -0.7
96,619 + MPMX19_02853 0.90 -0.8
96,620 - MPMX19_02853 0.90 -0.2
96,620 - MPMX19_02853 0.90 +0.1
96,620 - MPMX19_02853 0.90 -0.7
96,778 - +0.8
96,778 - -1.5
96,979 - MPMX19_02854 0.13 +0.9
97,012 - MPMX19_02854 0.15 +0.3
97,071 + MPMX19_02854 0.18 +0.3
97,071 + MPMX19_02854 0.18 +0.4
97,071 + MPMX19_02854 0.18 +0.6
97,071 + MPMX19_02854 0.18 +0.8
97,071 + MPMX19_02854 0.18 +1.1
97,071 + MPMX19_02854 0.18 +2.6
97,071 + MPMX19_02854 0.18 +0.7
97,071 + MPMX19_02854 0.18 -0.4
97,072 - MPMX19_02854 0.19 +0.6
97,072 - MPMX19_02854 0.19 -1.0
97,146 + MPMX19_02854 0.23 -0.4
97,146 + MPMX19_02854 0.23 -1.4
97,146 + MPMX19_02854 0.23 -0.5
97,147 - MPMX19_02854 0.23 +0.3
97,147 - MPMX19_02854 0.23 -1.4
97,185 + MPMX19_02854 0.25 -1.2
97,185 + MPMX19_02854 0.25 -0.4
97,185 + MPMX19_02854 0.25 -0.4
97,186 - MPMX19_02854 0.25 +0.2
97,224 + MPMX19_02854 0.27 -0.7
97,224 + MPMX19_02854 0.27 +0.7
97,224 + MPMX19_02854 0.27 -1.0
97,224 + MPMX19_02854 0.27 +0.8
97,224 + MPMX19_02854 0.27 -0.8
97,224 + MPMX19_02854 0.27 -0.8
97,224 + MPMX19_02854 0.27 -0.9
97,224 + MPMX19_02854 0.27 -1.4
97,224 + MPMX19_02854 0.27 -2.3
97,224 + MPMX19_02854 0.27 -0.9
97,224 + MPMX19_02854 0.27 +0.1
97,224 + MPMX19_02854 0.27 -1.9
97,224 + MPMX19_02854 0.27 -1.0
97,224 + MPMX19_02854 0.27 +0.6
97,224 + MPMX19_02854 0.27 +0.4
97,224 + MPMX19_02854 0.27 -0.4
97,224 + MPMX19_02854 0.27 +0.7
97,224 + MPMX19_02854 0.27 -1.2
97,225 - MPMX19_02854 0.27 -0.3
97,225 - MPMX19_02854 0.27 -0.5
97,225 - MPMX19_02854 0.27 -0.2
97,225 - MPMX19_02854 0.27 -0.0
97,225 - MPMX19_02854 0.27 -1.3
97,225 - MPMX19_02854 0.27 -0.4
97,225 - MPMX19_02854 0.27 -0.4
97,225 - MPMX19_02854 0.27 -0.0
97,225 - MPMX19_02854 0.27 +1.4
97,225 - MPMX19_02854 0.27 +0.5
97,225 - MPMX19_02854 0.27 +0.4
97,225 - MPMX19_02854 0.27 +0.3
97,225 - MPMX19_02854 0.27 +0.2
97,225 - MPMX19_02854 0.27 +0.4
97,434 + MPMX19_02854 0.39 -0.4
97,434 + MPMX19_02854 0.39 -1.0
97,435 - MPMX19_02854 0.39 -0.9
97,435 - MPMX19_02854 0.39 +0.3
97,480 - MPMX19_02854 0.42 -0.4
97,480 - MPMX19_02854 0.42 +0.6
97,524 + MPMX19_02854 0.44 +0.8
97,525 - MPMX19_02854 0.44 -0.4
97,635 + MPMX19_02854 0.50 -1.6
97,635 + MPMX19_02854 0.50 +0.7
97,635 + MPMX19_02854 0.50 -1.4
97,635 + MPMX19_02854 0.50 -0.4
97,635 + MPMX19_02854 0.50 -1.7
97,635 + MPMX19_02854 0.50 +1.2
97,635 + MPMX19_02854 0.50 +0.3
97,635 + MPMX19_02854 0.50 +0.4
97,635 + MPMX19_02854 0.50 +1.2
97,635 + MPMX19_02854 0.50 -0.5
97,635 + MPMX19_02854 0.50 -1.7
97,635 + MPMX19_02854 0.50 +0.4
97,635 + MPMX19_02854 0.50 -1.2
97,635 + MPMX19_02854 0.50 -0.7
97,636 - MPMX19_02854 0.50 +1.2
97,636 - MPMX19_02854 0.50 -0.3
97,636 - MPMX19_02854 0.50 +0.3
97,636 - MPMX19_02854 0.50 -0.5
97,636 - MPMX19_02854 0.50 -0.9
97,636 - MPMX19_02854 0.50 -0.8
97,636 - MPMX19_02854 0.50 -0.3
97,636 - MPMX19_02854 0.50 -0.7

Or see this region's nucleotide sequence