Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02808

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02807 and MPMX19_02808 are separated by 98 nucleotidesMPMX19_02808 and MPMX19_02809 are separated by 275 nucleotides MPMX19_02807: MPMX19_02807 - L-threonine dehydratase biosynthetic IlvA, at 42,169 to 43,698 _02807 MPMX19_02808: MPMX19_02808 - HTH-type transcriptional repressor NanR, at 43,797 to 44,573 _02808 MPMX19_02809: MPMX19_02809 - D-erythronate kinase, at 44,849 to 46,048 _02809 Position (kb) 43 44 45Strain fitness (log2 ratio) -2 -1 0 1at 43.036 kb on + strand, within MPMX19_02807at 43.036 kb on + strand, within MPMX19_02807at 43.037 kb on - strand, within MPMX19_02807at 43.037 kb on - strand, within MPMX19_02807at 43.196 kb on - strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.247 kb on - strand, within MPMX19_02807at 43.247 kb on - strand, within MPMX19_02807at 43.247 kb on - strand, within MPMX19_02807at 43.252 kb on + strand, within MPMX19_02807at 43.253 kb on - strand, within MPMX19_02807at 43.253 kb on - strand, within MPMX19_02807at 43.402 kb on + strand, within MPMX19_02807at 43.402 kb on + strand, within MPMX19_02807at 43.402 kb on + strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.555 kb on + strandat 43.737 kb on + strandat 43.737 kb on + strandat 43.737 kb on + strandat 44.439 kb on + strand, within MPMX19_02808at 44.571 kb on + strandat 44.650 kb on + strandat 44.670 kb on + strandat 44.678 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 45.006 kb on - strand, within MPMX19_02809at 45.040 kb on + strand, within MPMX19_02809at 45.040 kb on + strand, within MPMX19_02809at 45.040 kb on + strand, within MPMX19_02809at 45.040 kb on + strand, within MPMX19_02809at 45.041 kb on - strand, within MPMX19_02809at 45.041 kb on - strand, within MPMX19_02809at 45.041 kb on - strand, within MPMX19_02809at 45.147 kb on - strand, within MPMX19_02809at 45.230 kb on - strand, within MPMX19_02809at 45.230 kb on - strand, within MPMX19_02809at 45.230 kb on - strand, within MPMX19_02809

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
remove
43,036 + MPMX19_02807 0.57 -2.1
43,036 + MPMX19_02807 0.57 -0.3
43,037 - MPMX19_02807 0.57 -0.0
43,037 - MPMX19_02807 0.57 -1.7
43,196 - MPMX19_02807 0.67 -1.2
43,246 + MPMX19_02807 0.70 +0.1
43,246 + MPMX19_02807 0.70 -0.0
43,246 + MPMX19_02807 0.70 -0.9
43,246 + MPMX19_02807 0.70 -1.0
43,246 + MPMX19_02807 0.70 +0.6
43,246 + MPMX19_02807 0.70 -1.0
43,246 + MPMX19_02807 0.70 +0.8
43,247 - MPMX19_02807 0.70 -1.1
43,247 - MPMX19_02807 0.70 -1.2
43,247 - MPMX19_02807 0.70 +0.6
43,252 + MPMX19_02807 0.71 -0.5
43,253 - MPMX19_02807 0.71 -0.4
43,253 - MPMX19_02807 0.71 +0.0
43,402 + MPMX19_02807 0.81 +1.1
43,402 + MPMX19_02807 0.81 -0.5
43,402 + MPMX19_02807 0.81 +0.7
43,403 - MPMX19_02807 0.81 -1.0
43,403 - MPMX19_02807 0.81 +0.2
43,403 - MPMX19_02807 0.81 +1.2
43,403 - MPMX19_02807 0.81 -0.6
43,403 - MPMX19_02807 0.81 -0.5
43,403 - MPMX19_02807 0.81 -1.1
43,403 - MPMX19_02807 0.81 +1.1
43,555 + +1.2
43,737 + -0.6
43,737 + -0.2
43,737 + -1.7
44,439 + MPMX19_02808 0.83 -2.2
44,571 + -0.4
44,650 + -0.5
44,670 + -1.7
44,678 + +0.4
44,699 + +0.5
44,699 + -0.7
44,699 + -0.4
44,699 + +0.3
44,699 + +0.2
44,699 + +1.1
44,699 + -1.2
44,699 + +0.1
44,699 + -0.6
44,699 + +0.1
44,699 + +0.4
44,699 + -1.5
44,699 + +0.4
44,699 + -0.8
44,699 + +0.7
44,699 + +0.2
44,699 + -0.7
44,699 + -0.4
44,699 + -1.6
44,699 + +0.6
44,699 + +0.4
44,699 + +0.4
44,700 - -0.1
44,700 - +0.6
44,700 - +1.4
44,700 - -1.9
44,700 - +1.6
44,700 - -1.0
44,700 - +0.4
44,700 - +1.4
44,700 - +0.2
44,700 - +1.0
44,700 - -1.2
44,700 - -0.7
44,700 - -0.7
44,700 - -0.9
44,700 - -0.0
44,700 - -0.2
44,700 - +0.6
44,700 - +1.1
44,700 - -0.7
44,700 - +1.2
44,700 - -1.6
44,700 - -1.0
44,700 - +0.4
44,700 - +1.6
44,700 - -1.1
44,700 - +0.7
44,700 - -0.3
44,700 - -1.2
44,700 - -0.7
44,700 - -0.2
45,006 - MPMX19_02809 0.13 -1.6
45,040 + MPMX19_02809 0.16 -0.2
45,040 + MPMX19_02809 0.16 -1.2
45,040 + MPMX19_02809 0.16 +0.1
45,040 + MPMX19_02809 0.16 -0.0
45,041 - MPMX19_02809 0.16 -2.1
45,041 - MPMX19_02809 0.16 +0.4
45,041 - MPMX19_02809 0.16 -1.4
45,147 - MPMX19_02809 0.25 -0.4
45,230 - MPMX19_02809 0.32 -0.6
45,230 - MPMX19_02809 0.32 -0.7
45,230 - MPMX19_02809 0.32 -0.3

Or see this region's nucleotide sequence