Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01321

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
1,378,299	+		MPMX19_01320	0.18	-1.7
1,378,299	+		MPMX19_01320	0.18	-2.3
1,378,299	+		MPMX19_01320	0.18	-0.7
1,378,300	-		MPMX19_01320	0.19	-0.9
1,378,300	-		MPMX19_01320	0.19	-0.8
1,378,457	+		MPMX19_01320	0.33	-1.8
1,378,457	+		MPMX19_01320	0.33	-1.3
1,378,457	+		MPMX19_01320	0.33	-0.1
1,378,457	+		MPMX19_01320	0.33	+0.9
1,378,457	+		MPMX19_01320	0.33	-0.0
1,378,457	+		MPMX19_01320	0.33	+0.2
1,378,457	+		MPMX19_01320	0.33	-1.5
1,378,457	+		MPMX19_01320	0.33	-1.0
1,378,457	+		MPMX19_01320	0.33	+1.1
1,378,457	+		MPMX19_01320	0.33	+0.9
1,378,457	+		MPMX19_01320	0.33	+2.2
1,378,457	+		MPMX19_01320	0.33	+1.5
1,378,458	-		MPMX19_01320	0.33	+0.2
1,378,458	-		MPMX19_01320	0.33	+1.3
1,378,458	-		MPMX19_01320	0.33	-0.4
1,378,458	-		MPMX19_01320	0.33	-0.1
1,378,458	-		MPMX19_01320	0.33	+0.1
1,378,458	-		MPMX19_01320	0.33	-0.5
1,378,458	-		MPMX19_01320	0.33	+0.5
1,378,458	-		MPMX19_01320	0.33	-0.2
1,378,458	-		MPMX19_01320	0.33	-0.9
1,378,458	-		MPMX19_01320	0.33	-0.2
1,378,458	-		MPMX19_01320	0.33	-1.2
1,378,458	-		MPMX19_01320	0.33	-0.3
1,378,458	-		MPMX19_01320	0.33	+0.8
1,378,458	-		MPMX19_01320	0.33	-0.3
1,378,469	-		MPMX19_01320	0.34	-0.7
1,378,469	-		MPMX19_01320	0.34	-0.2
1,378,469	-		MPMX19_01320	0.34	-1.0
1,378,543	+		MPMX19_01320	0.40	-1.1
1,378,543	+		MPMX19_01320	0.40	-0.0
1,378,544	-		MPMX19_01320	0.40	-0.6
1,378,544	-		MPMX19_01320	0.40	-1.4
1,378,544	-		MPMX19_01320	0.40	+0.3
1,378,544	-		MPMX19_01320	0.40	-0.1
1,378,545	+		MPMX19_01320	0.40	+0.0
1,378,545	+		MPMX19_01320	0.40	+0.5
1,378,545	+		MPMX19_01320	0.40	+0.0
1,378,545	+		MPMX19_01320	0.40	+0.3
1,378,545	+		MPMX19_01320	0.40	+1.8
1,378,545	+		MPMX19_01320	0.40	+1.1
1,378,545	+		MPMX19_01320	0.40	-0.5
1,378,545	+		MPMX19_01320	0.40	+0.9
1,378,545	+		MPMX19_01320	0.40	-0.4
1,378,545	+		MPMX19_01320	0.40	-2.3
1,378,545	+		MPMX19_01320	0.40	+0.0
1,378,545	+		MPMX19_01320	0.40	+0.3
1,378,545	+		MPMX19_01320	0.40	+0.9
1,378,546	-		MPMX19_01320	0.40	+0.1
1,378,546	-		MPMX19_01320	0.40	-0.7
1,378,546	-		MPMX19_01320	0.40	-1.3
1,378,546	-		MPMX19_01320	0.40	+0.1
1,378,546	-		MPMX19_01320	0.40	-1.1
1,378,546	-		MPMX19_01320	0.40	-1.1
1,378,546	-		MPMX19_01320	0.40	+0.3
1,378,546	-		MPMX19_01320	0.40	-1.7
1,378,548	+		MPMX19_01320	0.41	+0.7
1,378,548	+		MPMX19_01320	0.41	+0.1
1,378,548	+		MPMX19_01320	0.41	-1.3
1,378,548	+		MPMX19_01320	0.41	-1.0
1,378,549	-		MPMX19_01320	0.41	+1.5
1,378,549	-		MPMX19_01320	0.41	+1.5
1,378,549	-		MPMX19_01320	0.41	-1.3
1,378,549	-		MPMX19_01320	0.41	-0.8
1,378,549	-		MPMX19_01320	0.41	-0.1
1,378,549	-		MPMX19_01320	0.41	-0.8
1,378,554	+		MPMX19_01320	0.41	-0.4
1,378,554	+		MPMX19_01320	0.41	-0.5
1,378,554	+		MPMX19_01320	0.41	-0.1
1,378,613	-		MPMX19_01320	0.46	-0.3
1,378,710	+		MPMX19_01320	0.55	-0.3
1,378,710	+		MPMX19_01320	0.55	-0.5
1,378,711	-		MPMX19_01320	0.55	+0.5
1,378,715	-		MPMX19_01320	0.55	+0.9
1,378,736	-		MPMX19_01320	0.57	-0.1
1,378,771	+		MPMX19_01320	0.60	-0.1
1,378,771	+		MPMX19_01320	0.60	-0.3
1,378,771	+		MPMX19_01320	0.60	-1.2
1,378,772	-		MPMX19_01320	0.61	+0.2
1,378,827	-		MPMX19_01320	0.65	-0.7
1,378,844	-		MPMX19_01320	0.67	-0.0
1,378,844	-		MPMX19_01320	0.67	+1.5
1,378,844	-		MPMX19_01320	0.67	+1.1
1,378,929	+		MPMX19_01320	0.74	-0.1
1,378,929	+		MPMX19_01320	0.74	+0.7
1,378,929	+		MPMX19_01320	0.74	+0.5
1,378,930	-		MPMX19_01320	0.75	-0.2
1,378,930	-		MPMX19_01320	0.75	+1.5
1,378,962	+		MPMX19_01320	0.77	-0.3
1,378,962	+		MPMX19_01320	0.77	-0.7
1,378,962	+		MPMX19_01320	0.77	-0.1
1,378,962	+		MPMX19_01320	0.77	-0.5
1,378,982	+		MPMX19_01320	0.79	-0.5
1,378,982	+		MPMX19_01320	0.79	+0.4
1,378,982	+		MPMX19_01320	0.79	+0.3
1,378,982	+		MPMX19_01320	0.79	+0.5
1,378,982	+		MPMX19_01320	0.79	+0.9
1,378,982	+		MPMX19_01320	0.79	-2.5
1,378,982	+		MPMX19_01320	0.79	-0.0
1,378,982	+		MPMX19_01320	0.79	-0.4
1,378,982	+		MPMX19_01320	0.79	-0.1
1,378,982	+		MPMX19_01320	0.79	-3.2
1,378,982	+		MPMX19_01320	0.79	-1.5
1,378,982	+		MPMX19_01320	0.79	-1.5
1,378,982	+		MPMX19_01320	0.79	-0.5
1,378,982	+		MPMX19_01320	0.79	+0.1
1,378,982	+		MPMX19_01320	0.79	-1.2
1,378,983	-		MPMX19_01320	0.79	-0.9
1,378,983	-		MPMX19_01320	0.79	+1.5
1,378,983	-		MPMX19_01320	0.79	+1.3
1,378,983	-		MPMX19_01320	0.79	-1.1
1,378,983	-		MPMX19_01320	0.79	+0.7
1,378,983	-		MPMX19_01320	0.79	-0.2
1,378,983	-		MPMX19_01320	0.79	-0.2
1,378,983	-		MPMX19_01320	0.79	-0.5
1,378,983	-		MPMX19_01320	0.79	+0.0
1,378,983	-		MPMX19_01320	0.79	-1.1
1,378,983	-		MPMX19_01320	0.79	-0.2
1,378,983	-		MPMX19_01320	0.79	-0.1
1,378,983	-		MPMX19_01320	0.79	-0.8
1,378,983	-		MPMX19_01320	0.79	+0.5
1,378,983	-		MPMX19_01320	0.79	-2.2
1,378,988	+		MPMX19_01320	0.80	-0.1
1,378,988	+		MPMX19_01320	0.80	+1.2
1,378,988	+		MPMX19_01320	0.80	-0.4
1,378,988	+		MPMX19_01320	0.80	+0.1
1,378,988	+		MPMX19_01320	0.80	-0.7
1,378,988	+		MPMX19_01320	0.80	-0.3
1,378,988	+		MPMX19_01320	0.80	-0.3
1,378,988	+		MPMX19_01320	0.80	+0.5
1,378,989	-		MPMX19_01320	0.80	-0.5
1,378,989	-		MPMX19_01320	0.80	-1.1
1,378,989	-		MPMX19_01320	0.80	+1.2
1,379,026	+		MPMX19_01320	0.83	-0.4
1,379,026	+		MPMX19_01320	0.83	-0.4
1,379,026	+		MPMX19_01320	0.83	+0.5
1,379,026	+		MPMX19_01320	0.83	-0.6
1,379,026	+		MPMX19_01320	0.83	+0.3
1,379,026	+		MPMX19_01320	0.83	-0.3
1,379,026	+		MPMX19_01320	0.83	-1.4
1,379,026	+		MPMX19_01320	0.83	-0.1
1,379,026	+		MPMX19_01320	0.83	+0.5
1,379,026	+		MPMX19_01320	0.83	-0.7
1,379,027	-		MPMX19_01320	0.83	-1.8
1,379,027	-		MPMX19_01320	0.83	-0.4
1,379,027	-		MPMX19_01320	0.83	-0.7
1,379,027	-		MPMX19_01320	0.83	+0.5
1,379,027	-		MPMX19_01320	0.83	-0.1
1,379,027	-		MPMX19_01320	0.83	+0.7
1,379,027	-		MPMX19_01320	0.83	-0.1
1,379,027	-		MPMX19_01320	0.83	+0.3
1,379,208	+				-0.6
1,379,208	+				-0.4
1,379,208	+				-1.3
1,379,208	+				-1.7
1,379,208	+				-0.4
1,379,208	+				-0.8
1,379,208	+				-1.0
1,379,208	+				-0.5
1,379,208	+				-0.8
1,379,208	+				-0.5
1,379,208	+				+0.1
1,379,208	+				+0.3
1,379,208	+				+0.0
1,379,208	+				-1.1
1,379,208	+				-1.0
1,379,208	+				-1.5
1,379,208	+				-1.4
1,379,209	-				-1.4
1,379,209	-				+2.8
1,379,209	-				-0.5
1,379,209	-				-0.3
1,379,209	-				+1.0
1,379,209	-				+0.8
1,379,209	-				+1.3
1,379,209	-				-0.9
1,379,209	-				+1.5
1,379,209	-				-0.7
1,379,209	-				+0.6
1,379,209	-				+0.7
1,379,209	-				-0.1
1,379,209	-				+0.4
1,379,209	-				-1.3
1,379,264	-				-1.3
1,379,329	+		MPMX19_01321	0.58	-0.5
1,379,329	+		MPMX19_01321	0.58	+0.1
1,379,329	+		MPMX19_01321	0.58	-0.1
1,379,329	+		MPMX19_01321	0.58	-1.3
1,379,329	+		MPMX19_01321	0.58	-1.9
1,379,329	+		MPMX19_01321	0.58	+0.2
1,379,329	+		MPMX19_01321	0.58	-0.6
1,379,329	+		MPMX19_01321	0.58	-0.1
1,379,329	+		MPMX19_01321	0.58	-0.3
1,379,329	+		MPMX19_01321	0.58	-0.8
1,379,329	+		MPMX19_01321	0.58	-1.7
1,379,329	+		MPMX19_01321	0.58	-1.6
1,379,329	+		MPMX19_01321	0.58	+0.6
1,379,329	+		MPMX19_01321	0.58	+0.2
1,379,360	+				-0.7
1,379,360	+				-1.4
1,379,373	+				-0.3
1,379,374	-				-0.8
1,379,374	-				-1.8
1,379,374	-				-2.6
1,379,375	+				+1.1
1,379,375	+				-0.5
1,379,375	+				-0.3
1,379,375	+				+0.9
1,379,375	+				-1.7
1,379,375	+				-0.9
1,379,375	+				-1.5
1,379,375	+				+2.0
1,379,375	+				-0.0
1,379,375	+				+0.5
1,379,375	+				-1.1
1,379,375	+				-0.5
1,379,375	+				+0.5
1,379,375	+				-1.3
1,379,375	+				-1.2
1,379,375	+				+0.1
1,379,375	+				-0.2
1,379,375	+				-1.6
1,379,375	+				+1.2
1,379,375	+				-0.2
1,379,375	+				+0.0
1,379,375	+				-1.4
1,379,375	+				+0.5
1,379,375	+				-0.4
1,379,375	+				+0.0
1,379,375	+				-0.4
1,379,375	+				-1.8
1,379,375	+				-0.5
1,379,375	+				-0.1
1,379,375	+				-1.5
1,379,375	+				-0.4
1,379,375	+				-1.5
1,379,375	+				+0.9
1,379,375	+				+0.4
1,379,375	+				+1.5
1,379,375	+				-1.8
1,379,375	+				-2.0
1,379,375	+				-1.1
1,379,375	+				-0.3
1,379,375	+				-0.1
1,379,375	+				-0.5
1,379,375	+				-0.2
1,379,375	+				+0.3
1,379,375	+				-0.4
1,379,376	-				-1.5
1,379,376	-				-0.7
1,379,376	-				-0.3
1,379,376	-				-1.1
1,379,376	-				-1.1
1,379,376	-				+0.0
1,379,376	-				-0.3
1,379,376	-				-0.3
1,379,376	-				+0.5
1,379,376	-				+1.3
1,379,376	-				+0.8
1,379,376	-				-0.3
1,379,376	-				-1.8
1,379,376	-				-0.1
1,379,376	-				+0.1
1,379,376	-				-0.3
1,379,376	-				-0.8
1,379,376	-				-0.7
1,379,376	-				+0.9
1,379,376	-				+0.2
1,379,376	-				-1.3
1,379,376	-				+0.4
1,379,376	-				+0.5
1,379,376	-				-0.4
1,379,376	-				+1.2
1,379,376	-				+0.2
1,379,376	-				-0.7
1,379,376	-				+1.1
1,379,376	-				-0.8
1,379,376	-				-0.1
1,379,376	-				-0.7
1,379,376	-				-2.6
1,379,376	-				+0.8
1,379,376	-				-2.9
1,379,376	-				-1.0
1,379,376	-				-0.2
1,379,376	-				-0.1
1,379,376	-				-0.7
1,379,376	-				+1.1
1,379,376	-				+0.2
1,379,390	+				-2.8
1,379,390	+				-0.6
1,379,390	+				-0.3
1,379,391	-				-0.0
1,379,391	-				-1.1
1,379,391	-				+0.1
1,379,391	-				+0.6
1,379,391	-				+0.3
1,379,391	-				-0.8
1,379,391	-				+0.3
1,379,391	-				-0.1
1,379,391	-				-0.1
1,379,391	-				+0.8
1,379,729	+				-0.1
1,379,729	+				-0.5
1,379,730	-				-0.8
1,379,730	-				+1.6
1,379,730	-				-0.9
1,379,733	+				+0.6
1,379,733	+				-0.5
1,379,734	-				+0.4
1,379,734	-				+0.3
1,379,734	-				-2.0
1,379,748	+				-0.0
1,379,748	+				+0.1
1,379,749	-				-1.0
1,379,762	+				-0.5
1,379,794	+				+0.0
1,379,794	+				-0.7
1,379,794	+				-0.2
1,379,794	+				+1.2
1,379,794	+				-0.5
1,379,794	+				-0.1
1,379,794	+				+0.3
1,379,794	+				-0.8
1,379,794	+				+0.6
1,379,795	-				-0.3
1,379,795	-				-2.5
1,379,795	-				-0.5
1,379,795	-				+0.2
1,379,855	+				-1.1
1,379,855	+				-0.8
1,379,855	+				+0.5
1,379,855	+				-1.7
1,379,856	-				-0.2
1,379,856	-				-2.5
1,379,864	+				-0.8
1,379,864	+				-0.3
1,379,864	+				+0.0
1,379,864	+				+0.2
1,379,865	-				+1.0
1,379,865	-				-0.4
1,379,865	-				+0.3
1,379,865	-				-0.3
1,379,865	-				+0.0
1,379,865	-				-0.0
1,379,865	-				-0.7
1,379,867	+				-0.6
1,379,867	+				-0.8
1,379,867	+				+1.5
1,379,867	+				+0.5
1,379,867	+				-2.6
1,379,868	-				-1.9
1,379,868	-				-1.6
1,379,868	-				-1.5
1,380,125	+		MPMX19_01323	0.82	-0.0
1,380,125	+		MPMX19_01323	0.82	+0.3
1,380,125	+		MPMX19_01323	0.82	-0.4
1,380,125	+		MPMX19_01323	0.82	-0.5
1,380,125	+		MPMX19_01323	0.82	+1.3
1,380,126	-		MPMX19_01323	0.83	+0.3
1,380,126	-		MPMX19_01323	0.83	+0.1
1,380,126	-		MPMX19_01323	0.83	-3.0
1,380,206	+				-0.4
1,380,206	+				-2.3
1,380,206	+				+0.6
1,380,206	+				-0.3
1,380,206	+				-0.4
1,380,206	+				-0.8
1,380,206	+				-0.7
1,380,206	+				+0.1
1,380,207	-				-0.8
1,380,207	-				+1.5
1,380,207	-				+1.7
1,380,207	-				-0.3
1,380,224	+				+0.2
1,380,224	+				+0.1
1,380,224	+				-0.4
1,380,224	+				-1.3
1,380,224	+				+0.0
1,380,224	+				-1.6
1,380,224	+				+1.0
1,380,224	+				-0.6
1,380,224	+				-0.3
1,380,224	+				+0.1
1,380,224	+				+0.5
1,380,224	+				-1.0
1,380,224	+				-2.2
1,380,224	+				-0.6
1,380,224	+				+0.9
1,380,224	+				-0.5
1,380,224	+				-1.0
1,380,224	+				-1.3
1,380,224	+				+0.6
1,380,225	-				-1.5
1,380,225	-				-3.2
1,380,225	-				+0.9
1,380,225	-				-1.1
1,380,225	-				-0.6
1,380,225	-				-2.2
1,380,225	-				-1.3
1,380,225	-				+1.3
1,380,225	-				+0.4
1,380,225	-				+0.2
1,380,225	-				-0.0
1,380,225	-				-0.9
1,380,225	-				-1.0
1,380,225	-				-0.1
1,380,225	-				+0.6
1,380,225	-				-0.2
1,380,225	-				-2.8
1,380,225	-				-2.6
1,380,225	-				+1.9
1,380,225	-				+0.7
1,380,225	-				-0.5
1,380,225	-				-1.6
1,380,307	+		MPMX19_01324	0.42	+0.8
1,380,307	+		MPMX19_01324	0.42	+0.3
1,380,308	-		MPMX19_01324	0.42	+0.3
1,380,308	-		MPMX19_01324	0.42	-1.3
1,380,312	+		MPMX19_01324	0.44	+0.7
1,380,312	+		MPMX19_01324	0.44	+0.5
1,380,312	+		MPMX19_01324	0.44	+0.3
1,380,312	+		MPMX19_01324	0.44	-0.3
1,380,312	+		MPMX19_01324	0.44	-0.5
1,380,312	+		MPMX19_01324	0.44	+1.0
1,380,312	+		MPMX19_01324	0.44	-0.0
1,380,312	+		MPMX19_01324	0.44	+0.6
1,380,312	+		MPMX19_01324	0.44	-0.8
1,380,312	+		MPMX19_01324	0.44	+0.0
1,380,312	+		MPMX19_01324	0.44	-0.3
1,380,312	+		MPMX19_01324	0.44	-2.5
1,380,312	+		MPMX19_01324	0.44	+0.7
1,380,312	+		MPMX19_01324	0.44	+0.7
1,380,312	+		MPMX19_01324	0.44	+0.4
1,380,312	+		MPMX19_01324	0.44	-3.2
1,380,312	+		MPMX19_01324	0.44	+0.3
1,380,312	+		MPMX19_01324	0.44	-0.1
1,380,312	+		MPMX19_01324	0.44	-0.4
1,380,312	+		MPMX19_01324	0.44	+0.6
1,380,312	+		MPMX19_01324	0.44	+0.2
1,380,313	-		MPMX19_01324	0.44	+0.1
1,380,313	-		MPMX19_01324	0.44	-2.2
1,380,313	-		MPMX19_01324	0.44	-0.5
1,380,313	-		MPMX19_01324	0.44	-0.7
1,380,313	-		MPMX19_01324	0.44	+1.3
1,380,313	-		MPMX19_01324	0.44	-0.6
1,380,313	-		MPMX19_01324	0.44	-2.2
1,380,313	-		MPMX19_01324	0.44	+1.3
1,380,313	-		MPMX19_01324	0.44	-2.4
1,380,313	-		MPMX19_01324	0.44	+1.5
1,380,313	-		MPMX19_01324	0.44	+0.4
1,380,313	-		MPMX19_01324	0.44	-0.6
1,380,313	-		MPMX19_01324	0.44	-0.1
1,380,313	-		MPMX19_01324	0.44	-0.5
1,380,313	-		MPMX19_01324	0.44	-0.3
1,380,313	-		MPMX19_01324	0.44	-0.0
1,380,313	-		MPMX19_01324	0.44	+2.7
1,380,313	-		MPMX19_01324	0.44	-0.1
1,380,313	-		MPMX19_01324	0.44	-0.3
1,380,313	-		MPMX19_01324	0.44	+1.0
1,380,313	-		MPMX19_01324	0.44	+0.2
1,380,313	-		MPMX19_01324	0.44	-0.9
1,380,313	-		MPMX19_01324	0.44	+0.2