Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00839 and MPMX19_00840 are separated by 179 nucleotides MPMX19_00840 and MPMX19_00841 overlap by 4 nucleotides MPMX19_00841 and MPMX19_00842 overlap by 4 nucleotides MPMX19_00842 and MPMX19_00843 are separated by 0 nucleotides
MPMX19_00839: MPMX19_00839 - hypothetical protein, at 872,330 to 872,599
_00839
MPMX19_00840: MPMX19_00840 - Pyridoxine 5'-phosphate synthase, at 872,779 to 873,528
_00840
MPMX19_00841: MPMX19_00841 - Holo-[acyl-carrier-protein] synthase, at 873,525 to 874,004
_00841
MPMX19_00842: MPMX19_00842 - Signal peptidase I, at 874,001 to 874,768
_00842
MPMX19_00843: MPMX19_00843 - Ribonuclease 3, at 874,769 to 875,554
_00843
Position (kb) 873
874
875 Strain fitness (log2 ratio) -2
-1
0
1
2 at 872.567 kb on + strand, within MPMX19_00839 at 872.568 kb on - strand, within MPMX19_00839 at 872.568 kb on - strand, within MPMX19_00839 at 872.568 kb on - strand, within MPMX19_00839 at 872.598 kb on - strand at 872.598 kb on - strand at 872.658 kb on - strand at 872.658 kb on - strand at 872.658 kb on - strand at 872.720 kb on + strand at 872.720 kb on + strand at 872.720 kb on + strand at 872.720 kb on + strand at 872.720 kb on + strand at 872.720 kb on + strand at 872.720 kb on + strand at 872.720 kb on + strand at 872.720 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 873.118 kb on + strand, within MPMX19_00840 at 873.118 kb on + strand, within MPMX19_00840 at 873.118 kb on + strand, within MPMX19_00840 at 873.256 kb on + strand, within MPMX19_00840 at 873.256 kb on + strand, within MPMX19_00840 at 873.256 kb on + strand, within MPMX19_00840 at 873.370 kb on + strand, within MPMX19_00840 at 873.370 kb on + strand, within MPMX19_00840 at 873.370 kb on + strand, within MPMX19_00840 at 873.370 kb on + strand, within MPMX19_00840 at 873.370 kb on + strand, within MPMX19_00840 at 873.370 kb on + strand, within MPMX19_00840 at 873.705 kb on + strand, within MPMX19_00841 at 873.705 kb on + strand, within MPMX19_00841 at 873.705 kb on + strand, within MPMX19_00841 at 873.705 kb on + strand, within MPMX19_00841 at 873.705 kb on + strand, within MPMX19_00841 at 873.705 kb on + strand, within MPMX19_00841 at 873.912 kb on + strand, within MPMX19_00841 at 874.706 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 872,567 + MPMX19_00839 0.88 -0.0 872,568 - MPMX19_00839 0.88 -1.0 872,568 - MPMX19_00839 0.88 +0.0 872,568 - MPMX19_00839 0.88 -0.3 872,598 - +1.8 872,598 - +0.7 872,658 - +0.3 872,658 - -0.6 872,658 - -0.1 872,720 + +1.4 872,720 + +0.2 872,720 + -0.5 872,720 + -0.0 872,720 + -1.4 872,720 + -0.9 872,720 + +0.5 872,720 + -1.0 872,720 + -1.1 872,722 + -0.7 872,722 + -1.1 872,722 + +0.4 872,722 + -0.6 872,722 + -0.2 872,722 + -0.3 872,722 + -2.3 872,722 + +0.5 872,722 + -0.3 872,722 + -0.3 872,722 + +0.3 872,722 + -0.8 872,722 + -0.0 872,722 + +0.9 872,722 + +0.0 872,722 + -0.7 872,722 + -0.6 872,722 + +1.5 872,724 + +0.5 872,724 + -1.1 872,724 + +0.0 872,724 + -0.3 872,724 + -0.1 872,724 + -1.1 872,724 + -2.1 872,724 + +0.3 872,724 + -0.3 872,724 + +0.7 872,724 + -0.1 872,724 + -0.4 872,724 + -0.2 872,724 + +0.8 872,724 + -1.5 872,724 + +0.1 872,724 + -0.5 873,118 + MPMX19_00840 0.45 -0.0 873,118 + MPMX19_00840 0.45 +1.3 873,118 + MPMX19_00840 0.45 +0.5 873,256 + MPMX19_00840 0.64 -1.8 873,256 + MPMX19_00840 0.64 +0.3 873,256 + MPMX19_00840 0.64 +0.7 873,370 + MPMX19_00840 0.79 +1.1 873,370 + MPMX19_00840 0.79 -1.0 873,370 + MPMX19_00840 0.79 +0.1 873,370 + MPMX19_00840 0.79 -1.3 873,370 + MPMX19_00840 0.79 +1.0 873,370 + MPMX19_00840 0.79 -0.8 873,705 + MPMX19_00841 0.38 -1.7 873,705 + MPMX19_00841 0.38 -2.1 873,705 + MPMX19_00841 0.38 -1.5 873,705 + MPMX19_00841 0.38 +0.5 873,705 + MPMX19_00841 0.38 -0.1 873,705 + MPMX19_00841 0.38 +0.5 873,912 + MPMX19_00841 0.81 -0.1 874,706 + +0.1
Or see this region's nucleotide sequence