Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00757 and MPMX19_00758 are separated by 365 nucleotides MPMX19_00758 and MPMX19_00759 are separated by 91 nucleotides MPMX19_00759 and MPMX19_00760 are separated by 116 nucleotides
MPMX19_00757: MPMX19_00757 - Carbamoyl-phosphate synthase small chain, at 772,148 to 773,320
_00757
MPMX19_00758: MPMX19_00758 - putative protein YqeY, at 773,686 to 774,150
_00758
MPMX19_00759: MPMX19_00759 - hypothetical protein, at 774,242 to 774,838
_00759
MPMX19_00760: MPMX19_00760 - DNA primase, at 774,955 to 776,862
_00760
Position (kb) 773
774
775 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 773.413 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.491 kb on - strand at 773.493 kb on - strand at 773.493 kb on - strand at 773.493 kb on - strand at 773.493 kb on - strand at 773.493 kb on - strand at 773.493 kb on - strand at 773.493 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.523 kb on - strand at 773.627 kb on + strand at 773.627 kb on + strand at 773.627 kb on + strand at 773.628 kb on - strand at 773.653 kb on + strand at 773.653 kb on + strand at 773.653 kb on + strand at 773.654 kb on - strand at 773.654 kb on - strand at 773.899 kb on + strand, within MPMX19_00758 at 773.899 kb on + strand, within MPMX19_00758 at 773.899 kb on + strand, within MPMX19_00758 at 773.899 kb on + strand, within MPMX19_00758 at 773.899 kb on + strand, within MPMX19_00758 at 773.899 kb on + strand, within MPMX19_00758 at 773.899 kb on + strand, within MPMX19_00758 at 773.899 kb on + strand, within MPMX19_00758 at 773.899 kb on + strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.900 kb on - strand, within MPMX19_00758 at 773.965 kb on + strand, within MPMX19_00758 at 773.965 kb on + strand, within MPMX19_00758 at 773.965 kb on + strand, within MPMX19_00758 at 773.965 kb on + strand, within MPMX19_00758 at 773.965 kb on + strand, within MPMX19_00758 at 773.965 kb on + strand, within MPMX19_00758 at 773.965 kb on + strand, within MPMX19_00758 at 773.965 kb on + strand, within MPMX19_00758 at 773.965 kb on + strand, within MPMX19_00758 at 773.966 kb on - strand, within MPMX19_00758 at 773.966 kb on - strand, within MPMX19_00758 at 773.966 kb on - strand, within MPMX19_00758 at 773.966 kb on - strand, within MPMX19_00758 at 773.966 kb on - strand, within MPMX19_00758 at 773.966 kb on - strand, within MPMX19_00758 at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.148 kb on + strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.149 kb on - strand at 774.327 kb on - strand, within MPMX19_00759 at 774.399 kb on + strand, within MPMX19_00759 at 774.399 kb on + strand, within MPMX19_00759 at 774.399 kb on + strand, within MPMX19_00759 at 774.399 kb on + strand, within MPMX19_00759 at 774.399 kb on + strand, within MPMX19_00759 at 774.399 kb on + strand, within MPMX19_00759 at 774.399 kb on + strand, within MPMX19_00759 at 774.400 kb on - strand, within MPMX19_00759 at 774.400 kb on - strand, within MPMX19_00759 at 774.400 kb on - strand, within MPMX19_00759 at 774.400 kb on - strand, within MPMX19_00759 at 774.400 kb on - strand, within MPMX19_00759 at 774.400 kb on - strand, within MPMX19_00759 at 774.400 kb on - strand, within MPMX19_00759 at 774.400 kb on - strand, within MPMX19_00759 at 774.400 kb on - strand, within MPMX19_00759 at 774.449 kb on - strand, within MPMX19_00759 at 774.468 kb on + strand, within MPMX19_00759 at 774.468 kb on + strand, within MPMX19_00759 at 774.468 kb on + strand, within MPMX19_00759 at 774.469 kb on - strand, within MPMX19_00759 at 774.469 kb on - strand, within MPMX19_00759 at 774.469 kb on - strand, within MPMX19_00759 at 774.469 kb on - strand, within MPMX19_00759 at 774.629 kb on + strand, within MPMX19_00759 at 774.629 kb on + strand, within MPMX19_00759 at 774.629 kb on + strand, within MPMX19_00759 at 774.629 kb on + strand, within MPMX19_00759 at 774.629 kb on + strand, within MPMX19_00759 at 774.629 kb on + strand, within MPMX19_00759 at 774.629 kb on + strand, within MPMX19_00759 at 774.629 kb on + strand, within MPMX19_00759 at 774.629 kb on + strand, within MPMX19_00759 at 774.629 kb on + strand, within MPMX19_00759 at 774.629 kb on + strand, within MPMX19_00759 at 774.630 kb on - strand, within MPMX19_00759 at 774.630 kb on - strand, within MPMX19_00759 at 774.630 kb on - strand, within MPMX19_00759 at 774.630 kb on - strand, within MPMX19_00759 at 774.630 kb on - strand, within MPMX19_00759 at 774.630 kb on - strand, within MPMX19_00759 at 774.630 kb on - strand, within MPMX19_00759 at 774.630 kb on - strand, within MPMX19_00759 at 774.630 kb on - strand, within MPMX19_00759 at 774.630 kb on - strand, within MPMX19_00759 at 774.630 kb on - strand, within MPMX19_00759 at 774.640 kb on - strand, within MPMX19_00759 at 774.640 kb on - strand, within MPMX19_00759 at 774.779 kb on + strand at 774.779 kb on + strand at 774.779 kb on + strand at 774.780 kb on - strand at 774.780 kb on - strand at 774.780 kb on - strand at 774.780 kb on - strand at 774.780 kb on - strand at 774.796 kb on + strand at 774.796 kb on + strand at 774.796 kb on + strand at 774.796 kb on + strand at 774.796 kb on + strand at 774.796 kb on + strand at 774.796 kb on + strand at 774.796 kb on + strand at 774.796 kb on + strand at 774.796 kb on + strand at 774.796 kb on + strand at 774.796 kb on + strand at 774.796 kb on + strand at 774.796 kb on + strand at 774.796 kb on + strand at 774.796 kb on + strand at 774.796 kb on + strand at 774.796 kb on + strand at 774.797 kb on - strand at 774.797 kb on - strand at 774.797 kb on - strand at 774.797 kb on - strand at 774.797 kb on - strand at 774.797 kb on - strand at 774.797 kb on - strand at 774.797 kb on - strand at 774.797 kb on - strand at 774.797 kb on - strand at 774.797 kb on - strand at 774.797 kb on - strand at 774.797 kb on - strand at 774.797 kb on - strand at 774.803 kb on + strand at 774.803 kb on + strand at 774.803 kb on + strand at 774.803 kb on + strand at 774.803 kb on + strand at 774.803 kb on + strand at 774.803 kb on + strand at 774.803 kb on + strand at 774.803 kb on + strand at 774.803 kb on + strand at 774.803 kb on + strand at 774.803 kb on + strand at 774.803 kb on + strand at 774.803 kb on + strand at 774.803 kb on + strand at 774.803 kb on + strand at 774.803 kb on + strand at 774.804 kb on - strand at 774.804 kb on - strand at 774.804 kb on - strand at 774.804 kb on - strand at 774.804 kb on - strand at 774.804 kb on - strand at 774.804 kb on - strand at 774.804 kb on - strand at 774.804 kb on - strand at 774.804 kb on - strand at 774.882 kb on + strand at 774.882 kb on + strand at 774.882 kb on + strand at 774.882 kb on + strand at 774.882 kb on + strand at 774.882 kb on + strand at 774.882 kb on + strand at 774.882 kb on + strand at 774.882 kb on + strand at 774.882 kb on + strand at 774.882 kb on + strand at 774.882 kb on + strand at 774.882 kb on + strand at 774.882 kb on + strand at 774.882 kb on + strand at 774.882 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.885 kb on + strand at 774.896 kb on + strand at 774.896 kb on + strand at 774.896 kb on + strand at 774.896 kb on + strand at 774.896 kb on + strand at 774.896 kb on + strand at 774.896 kb on + strand at 774.896 kb on + strand at 774.896 kb on + strand at 774.896 kb on + strand at 774.896 kb on + strand at 774.896 kb on + strand at 774.896 kb on + strand at 774.896 kb on + strand at 774.896 kb on + strand at 774.896 kb on + strand at 774.896 kb on + strand at 774.898 kb on + strand at 774.898 kb on + strand at 774.898 kb on + strand at 774.898 kb on + strand at 774.898 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 773,413 - +0.2 773,491 - +0.2 773,491 - +0.0 773,491 - +0.9 773,491 - -1.9 773,491 - -1.5 773,491 - -1.1 773,491 - -2.2 773,491 - -0.9 773,491 - -0.5 773,491 - -0.9 773,491 - +0.3 773,491 - +0.5 773,491 - +0.1 773,491 - -0.7 773,491 - +0.2 773,491 - +0.4 773,491 - -0.1 773,491 - -0.4 773,491 - +0.7 773,491 - +0.3 773,491 - +1.3 773,491 - +0.7 773,491 - -1.3 773,491 - -0.1 773,491 - -1.2 773,491 - -1.8 773,493 - -2.4 773,493 - +0.1 773,493 - -0.1 773,493 - -1.6 773,493 - +0.5 773,493 - +0.3 773,493 - -1.1 773,523 - +2.8 773,523 - -0.9 773,523 - -0.4 773,523 - +1.2 773,523 - -0.9 773,523 - -1.1 773,523 - +0.3 773,523 - -0.5 773,523 - +1.1 773,523 - -1.8 773,523 - +0.2 773,523 - +0.0 773,523 - -0.2 773,523 - -0.4 773,523 - -0.1 773,523 - +0.9 773,523 - -0.3 773,523 - -0.1 773,523 - -0.5 773,627 + -0.3 773,627 + -0.3 773,627 + +0.3 773,628 - -0.7 773,653 + -0.8 773,653 + -0.4 773,653 + -0.0 773,654 - +0.8 773,654 - -0.4 773,899 + MPMX19_00758 0.46 -0.7 773,899 + MPMX19_00758 0.46 -0.2 773,899 + MPMX19_00758 0.46 -0.2 773,899 + MPMX19_00758 0.46 -0.1 773,899 + MPMX19_00758 0.46 -0.4 773,899 + MPMX19_00758 0.46 -0.2 773,899 + MPMX19_00758 0.46 -0.3 773,899 + MPMX19_00758 0.46 +0.6 773,899 + MPMX19_00758 0.46 -0.6 773,900 - MPMX19_00758 0.46 -0.7 773,900 - MPMX19_00758 0.46 -1.7 773,900 - MPMX19_00758 0.46 +0.8 773,900 - MPMX19_00758 0.46 +0.1 773,900 - MPMX19_00758 0.46 +0.3 773,900 - MPMX19_00758 0.46 -0.9 773,900 - MPMX19_00758 0.46 -1.3 773,900 - MPMX19_00758 0.46 -0.3 773,900 - MPMX19_00758 0.46 +0.4 773,900 - MPMX19_00758 0.46 -0.1 773,900 - MPMX19_00758 0.46 -1.0 773,965 + MPMX19_00758 0.60 -0.4 773,965 + MPMX19_00758 0.60 -0.8 773,965 + MPMX19_00758 0.60 -0.6 773,965 + MPMX19_00758 0.60 -1.5 773,965 + MPMX19_00758 0.60 +0.5 773,965 + MPMX19_00758 0.60 -2.5 773,965 + MPMX19_00758 0.60 -0.5 773,965 + MPMX19_00758 0.60 -0.3 773,965 + MPMX19_00758 0.60 +0.3 773,966 - MPMX19_00758 0.60 +0.5 773,966 - MPMX19_00758 0.60 +0.1 773,966 - MPMX19_00758 0.60 -0.1 773,966 - MPMX19_00758 0.60 +0.5 773,966 - MPMX19_00758 0.60 -0.0 773,966 - MPMX19_00758 0.60 +0.5 774,148 + -1.3 774,148 + +0.0 774,148 + -0.5 774,148 + -0.8 774,148 + -0.5 774,148 + +0.3 774,148 + -0.9 774,148 + +0.2 774,148 + -1.3 774,148 + -0.1 774,148 + -0.3 774,148 + -0.1 774,148 + +1.3 774,148 + -1.0 774,148 + +0.7 774,148 + +0.7 774,148 + -2.1 774,148 + +0.0 774,148 + +0.2 774,148 + +0.2 774,148 + -0.3 774,148 + +0.4 774,148 + +0.6 774,148 + +0.4 774,149 - -2.4 774,149 - +0.5 774,149 - +0.3 774,149 - -1.2 774,149 - +0.7 774,149 - -1.1 774,149 - -1.8 774,149 - -1.7 774,149 - -1.3 774,149 - +0.1 774,149 - +0.3 774,149 - +0.0 774,149 - -0.8 774,149 - -1.5 774,149 - -0.2 774,149 - -1.1 774,149 - +1.5 774,149 - -1.1 774,149 - -0.5 774,149 - -0.1 774,149 - +1.6 774,327 - MPMX19_00759 0.14 -1.4 774,399 + MPMX19_00759 0.26 +0.2 774,399 + MPMX19_00759 0.26 +0.8 774,399 + MPMX19_00759 0.26 +0.3 774,399 + MPMX19_00759 0.26 -0.1 774,399 + MPMX19_00759 0.26 +0.6 774,399 + MPMX19_00759 0.26 +0.5 774,399 + MPMX19_00759 0.26 +0.5 774,400 - MPMX19_00759 0.26 +0.5 774,400 - MPMX19_00759 0.26 -0.8 774,400 - MPMX19_00759 0.26 +0.4 774,400 - MPMX19_00759 0.26 -1.5 774,400 - MPMX19_00759 0.26 -0.5 774,400 - MPMX19_00759 0.26 -0.6 774,400 - MPMX19_00759 0.26 +1.2 774,400 - MPMX19_00759 0.26 -1.3 774,400 - MPMX19_00759 0.26 +0.9 774,449 - MPMX19_00759 0.35 -0.1 774,468 + MPMX19_00759 0.38 +0.5 774,468 + MPMX19_00759 0.38 +0.3 774,468 + MPMX19_00759 0.38 -0.9 774,469 - MPMX19_00759 0.38 -1.8 774,469 - MPMX19_00759 0.38 +2.8 774,469 - MPMX19_00759 0.38 +1.5 774,469 - MPMX19_00759 0.38 -0.6 774,629 + MPMX19_00759 0.65 +0.1 774,629 + MPMX19_00759 0.65 -1.9 774,629 + MPMX19_00759 0.65 -1.7 774,629 + MPMX19_00759 0.65 -1.6 774,629 + MPMX19_00759 0.65 -1.1 774,629 + MPMX19_00759 0.65 -1.1 774,629 + MPMX19_00759 0.65 +1.2 774,629 + MPMX19_00759 0.65 +2.2 774,629 + MPMX19_00759 0.65 -1.8 774,629 + MPMX19_00759 0.65 +1.1 774,629 + MPMX19_00759 0.65 -1.0 774,630 - MPMX19_00759 0.65 -0.3 774,630 - MPMX19_00759 0.65 -0.1 774,630 - MPMX19_00759 0.65 -1.8 774,630 - MPMX19_00759 0.65 +0.6 774,630 - MPMX19_00759 0.65 +1.0 774,630 - MPMX19_00759 0.65 +0.7 774,630 - MPMX19_00759 0.65 +0.5 774,630 - MPMX19_00759 0.65 -0.6 774,630 - MPMX19_00759 0.65 -0.3 774,630 - MPMX19_00759 0.65 +0.3 774,630 - MPMX19_00759 0.65 -0.1 774,640 - MPMX19_00759 0.67 -1.7 774,640 - MPMX19_00759 0.67 +0.9 774,779 + -1.4 774,779 + +0.4 774,779 + +0.0 774,780 - -1.2 774,780 - +1.2 774,780 - -2.6 774,780 - 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Or see this region's nucleotide sequence