Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00707 and MPMX19_00708 are separated by 84 nucleotides MPMX19_00708 and MPMX19_00709 are separated by 145 nucleotides
MPMX19_00707: MPMX19_00707 - ATP-dependent zinc metalloprotease FtsH, at 728,187 to 730,124
_00707
MPMX19_00708: MPMX19_00708 - hypothetical protein, at 730,209 to 731,372
_00708
MPMX19_00709: MPMX19_00709 - Enoyl-[acyl-carrier-protein] reductase [NADH] FabI, at 731,518 to 732,366
_00709
Position (kb) 730
731
732 Strain fitness (log2 ratio) -2
-1
0
1
2 at 730.288 kb on + strand at 730.288 kb on + strand at 730.288 kb on + strand at 730.289 kb on - strand at 730.289 kb on - strand at 730.289 kb on - strand at 730.289 kb on - strand at 730.364 kb on - strand, within MPMX19_00708 at 730.379 kb on - strand, within MPMX19_00708 at 730.402 kb on + strand, within MPMX19_00708 at 730.402 kb on + strand, within MPMX19_00708 at 730.402 kb on + strand, within MPMX19_00708 at 730.456 kb on + strand, within MPMX19_00708 at 730.456 kb on + strand, within MPMX19_00708 at 730.543 kb on + strand, within MPMX19_00708 at 730.543 kb on + strand, within MPMX19_00708 at 730.543 kb on + strand, within MPMX19_00708 at 730.639 kb on + strand, within MPMX19_00708 at 730.639 kb on + strand, within MPMX19_00708 at 730.645 kb on + strand, within MPMX19_00708 at 730.645 kb on + strand, within MPMX19_00708 at 730.645 kb on + strand, within MPMX19_00708 at 730.645 kb on + strand, within MPMX19_00708 at 730.645 kb on + strand, within MPMX19_00708 at 730.645 kb on + strand, within MPMX19_00708 at 730.645 kb on + strand, within MPMX19_00708 at 730.645 kb on + strand, within MPMX19_00708 at 730.645 kb on + strand, within MPMX19_00708 at 730.646 kb on - strand, within MPMX19_00708 at 730.646 kb on - strand, within MPMX19_00708 at 730.646 kb on - strand, within MPMX19_00708 at 730.646 kb on - strand, within MPMX19_00708 at 730.646 kb on - strand, within MPMX19_00708 at 730.646 kb on - strand, within MPMX19_00708 at 730.646 kb on - strand, within MPMX19_00708 at 730.646 kb on - strand, within MPMX19_00708 at 730.646 kb on - strand, within MPMX19_00708 at 730.646 kb on - strand, within MPMX19_00708 at 731.065 kb on + strand, within MPMX19_00708 at 731.065 kb on + strand, within MPMX19_00708 at 731.065 kb on + strand, within MPMX19_00708 at 731.065 kb on + strand, within MPMX19_00708 at 731.065 kb on + strand, within MPMX19_00708 at 731.065 kb on + strand, within MPMX19_00708 at 731.066 kb on - strand, within MPMX19_00708 at 731.066 kb on - strand, within MPMX19_00708 at 731.066 kb on - strand, within MPMX19_00708 at 731.113 kb on + strand, within MPMX19_00708 at 731.113 kb on + strand, within MPMX19_00708 at 731.113 kb on + strand, within MPMX19_00708 at 731.113 kb on + strand, within MPMX19_00708 at 731.113 kb on + strand, within MPMX19_00708 at 731.113 kb on + strand, within MPMX19_00708 at 731.113 kb on + strand, within MPMX19_00708 at 731.113 kb on + strand, within MPMX19_00708 at 731.113 kb on + strand, within MPMX19_00708 at 731.113 kb on + strand, within MPMX19_00708 at 731.113 kb on + strand, within MPMX19_00708 at 731.113 kb on + strand, within MPMX19_00708 at 731.113 kb on + strand, within MPMX19_00708 at 731.113 kb on + strand, within MPMX19_00708 at 731.113 kb on + strand, within MPMX19_00708 at 731.113 kb on + strand, within MPMX19_00708 at 731.113 kb on + strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.114 kb on - strand, within MPMX19_00708 at 731.209 kb on + strand, within MPMX19_00708 at 731.317 kb on + strand at 731.317 kb on + strand at 731.317 kb on + strand at 731.317 kb on + strand at 731.376 kb on + strand at 731.377 kb on - strand at 731.377 kb on - strand at 731.395 kb on + strand at 731.395 kb on + strand at 731.395 kb on + strand at 731.395 kb on + strand at 731.396 kb on - strand at 731.410 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 730,288 + -0.6 730,288 + +0.1 730,288 + +0.1 730,289 - -0.7 730,289 - +0.6 730,289 - +0.2 730,289 - -0.8 730,364 - MPMX19_00708 0.13 -0.5 730,379 - MPMX19_00708 0.15 +0.8 730,402 + MPMX19_00708 0.17 +0.4 730,402 + MPMX19_00708 0.17 -0.5 730,402 + MPMX19_00708 0.17 +1.2 730,456 + MPMX19_00708 0.21 -0.7 730,456 + MPMX19_00708 0.21 -0.1 730,543 + MPMX19_00708 0.29 +0.2 730,543 + MPMX19_00708 0.29 +0.4 730,543 + MPMX19_00708 0.29 +0.3 730,639 + MPMX19_00708 0.37 -1.8 730,639 + MPMX19_00708 0.37 -0.6 730,645 + MPMX19_00708 0.37 -0.2 730,645 + MPMX19_00708 0.37 -0.1 730,645 + MPMX19_00708 0.37 +0.9 730,645 + MPMX19_00708 0.37 -0.2 730,645 + MPMX19_00708 0.37 +0.3 730,645 + MPMX19_00708 0.37 -0.1 730,645 + MPMX19_00708 0.37 +0.9 730,645 + MPMX19_00708 0.37 +0.3 730,645 + MPMX19_00708 0.37 -0.2 730,646 - MPMX19_00708 0.38 -0.5 730,646 - MPMX19_00708 0.38 +1.0 730,646 - MPMX19_00708 0.38 +2.1 730,646 - MPMX19_00708 0.38 +0.4 730,646 - MPMX19_00708 0.38 -0.7 730,646 - MPMX19_00708 0.38 +1.0 730,646 - MPMX19_00708 0.38 -0.1 730,646 - MPMX19_00708 0.38 +1.2 730,646 - MPMX19_00708 0.38 +0.3 730,646 - MPMX19_00708 0.38 -0.4 731,065 + MPMX19_00708 0.74 -0.5 731,065 + MPMX19_00708 0.74 -0.8 731,065 + MPMX19_00708 0.74 -1.1 731,065 + MPMX19_00708 0.74 -0.3 731,065 + MPMX19_00708 0.74 -0.9 731,065 + MPMX19_00708 0.74 +0.2 731,066 - MPMX19_00708 0.74 +1.5 731,066 - MPMX19_00708 0.74 -1.6 731,066 - MPMX19_00708 0.74 +0.5 731,113 + MPMX19_00708 0.78 +0.5 731,113 + MPMX19_00708 0.78 -0.9 731,113 + MPMX19_00708 0.78 -0.6 731,113 + MPMX19_00708 0.78 -0.1 731,113 + MPMX19_00708 0.78 +0.8 731,113 + MPMX19_00708 0.78 +0.4 731,113 + MPMX19_00708 0.78 +0.3 731,113 + MPMX19_00708 0.78 +1.3 731,113 + MPMX19_00708 0.78 -0.5 731,113 + MPMX19_00708 0.78 +0.2 731,113 + MPMX19_00708 0.78 +0.1 731,113 + MPMX19_00708 0.78 -0.3 731,113 + MPMX19_00708 0.78 +0.2 731,113 + MPMX19_00708 0.78 -0.5 731,113 + MPMX19_00708 0.78 -1.7 731,113 + MPMX19_00708 0.78 +0.1 731,113 + MPMX19_00708 0.78 -0.3 731,114 - MPMX19_00708 0.78 +0.9 731,114 - MPMX19_00708 0.78 -0.1 731,114 - MPMX19_00708 0.78 -1.9 731,114 - MPMX19_00708 0.78 -1.1 731,114 - MPMX19_00708 0.78 -0.8 731,114 - MPMX19_00708 0.78 -1.8 731,114 - MPMX19_00708 0.78 -1.1 731,114 - MPMX19_00708 0.78 -0.1 731,114 - MPMX19_00708 0.78 -1.5 731,114 - MPMX19_00708 0.78 -0.3 731,114 - MPMX19_00708 0.78 -0.1 731,114 - MPMX19_00708 0.78 +0.6 731,114 - MPMX19_00708 0.78 +0.0 731,114 - MPMX19_00708 0.78 -0.9 731,114 - MPMX19_00708 0.78 -0.1 731,114 - MPMX19_00708 0.78 +0.6 731,114 - MPMX19_00708 0.78 +0.2 731,114 - MPMX19_00708 0.78 -0.1 731,114 - MPMX19_00708 0.78 -0.5 731,114 - MPMX19_00708 0.78 +0.5 731,114 - MPMX19_00708 0.78 +0.2 731,114 - MPMX19_00708 0.78 +0.3 731,114 - MPMX19_00708 0.78 +0.7 731,114 - MPMX19_00708 0.78 -1.5 731,114 - MPMX19_00708 0.78 -0.5 731,114 - MPMX19_00708 0.78 +0.0 731,114 - MPMX19_00708 0.78 -1.8 731,114 - MPMX19_00708 0.78 -0.9 731,209 + MPMX19_00708 0.86 +0.2 731,317 + +0.3 731,317 + +0.5 731,317 + -0.9 731,317 + -0.5 731,376 + -0.1 731,377 - -1.1 731,377 - -1.5 731,395 + +0.0 731,395 + +0.4 731,395 + -0.3 731,395 + -1.0 731,396 - -0.8 731,410 - -0.8
Or see this region's nucleotide sequence