Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00428 and MPMX19_00429 are separated by 118 nucleotides MPMX19_00429 and MPMX19_00430 are separated by 111 nucleotides MPMX19_00430 and MPMX19_00431 are separated by 12 nucleotides
MPMX19_00428: MPMX19_00428 - hypothetical protein, at 429,281 to 430,783
_00428
MPMX19_00429: MPMX19_00429 - hypothetical protein, at 430,902 to 431,135
_00429
MPMX19_00430: MPMX19_00430 - hypothetical protein, at 431,247 to 431,609
_00430
MPMX19_00431: MPMX19_00431 - hypothetical protein, at 431,622 to 432,335
_00431
Position (kb) 430
431
432 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 430.118 kb on + strand, within MPMX19_00428 at 430.118 kb on + strand, within MPMX19_00428 at 430.119 kb on - strand, within MPMX19_00428 at 430.119 kb on - strand, within MPMX19_00428 at 430.119 kb on - strand, within MPMX19_00428 at 430.119 kb on - strand, within MPMX19_00428 at 430.119 kb on - strand, within MPMX19_00428 at 430.119 kb on - strand, within MPMX19_00428 at 430.119 kb on - strand, within MPMX19_00428 at 430.445 kb on + strand, within MPMX19_00428 at 430.446 kb on - strand, within MPMX19_00428 at 430.446 kb on - strand, within MPMX19_00428 at 430.451 kb on + strand, within MPMX19_00428 at 430.451 kb on + strand, within MPMX19_00428 at 430.451 kb on + strand, within MPMX19_00428 at 430.451 kb on + strand, within MPMX19_00428 at 430.451 kb on + strand, within MPMX19_00428 at 430.451 kb on + strand, within MPMX19_00428 at 430.451 kb on + strand, within MPMX19_00428 at 430.451 kb on + strand, within MPMX19_00428 at 430.451 kb on + strand, within MPMX19_00428 at 430.451 kb on + strand, within MPMX19_00428 at 430.451 kb on + strand, within MPMX19_00428 at 430.451 kb on + strand, within MPMX19_00428 at 430.451 kb on + strand, within MPMX19_00428 at 430.452 kb on - strand, within MPMX19_00428 at 430.452 kb on - strand, within MPMX19_00428 at 430.452 kb on - strand, within MPMX19_00428 at 430.452 kb on - strand, within MPMX19_00428 at 430.452 kb on - strand, within MPMX19_00428 at 430.452 kb on - strand, within MPMX19_00428 at 430.452 kb on - strand, within MPMX19_00428 at 430.452 kb on - strand, within MPMX19_00428 at 430.493 kb on + strand, within MPMX19_00428 at 430.493 kb on + strand, within MPMX19_00428 at 430.493 kb on + strand, within MPMX19_00428 at 430.493 kb on + strand, within MPMX19_00428 at 430.493 kb on + strand, within MPMX19_00428 at 430.493 kb on + strand, within MPMX19_00428 at 430.493 kb on + strand, within MPMX19_00428 at 430.493 kb on + strand, within MPMX19_00428 at 430.493 kb on + strand, within MPMX19_00428 at 430.493 kb on + strand, within MPMX19_00428 at 430.493 kb on + strand, within MPMX19_00428 at 430.493 kb on + strand, within MPMX19_00428 at 430.493 kb on + strand, within MPMX19_00428 at 430.493 kb on + strand, within MPMX19_00428 at 430.493 kb on + strand, within MPMX19_00428 at 430.493 kb on + strand, within MPMX19_00428 at 430.493 kb on + strand, within MPMX19_00428 at 430.493 kb on + strand, within MPMX19_00428 at 430.494 kb on - strand, within MPMX19_00428 at 430.494 kb on - strand, within MPMX19_00428 at 430.494 kb on - strand, within MPMX19_00428 at 430.494 kb on - strand, within MPMX19_00428 at 430.494 kb on - strand, within MPMX19_00428 at 430.494 kb on - strand, within MPMX19_00428 at 430.494 kb on - strand, within MPMX19_00428 at 430.494 kb on - strand, within MPMX19_00428 at 430.494 kb on - strand, within MPMX19_00428 at 430.494 kb on - strand, within MPMX19_00428 at 430.494 kb on - strand, within MPMX19_00428 at 430.494 kb on - strand, within MPMX19_00428 at 430.494 kb on - strand, within MPMX19_00428 at 430.494 kb on - strand, within MPMX19_00428 at 430.494 kb on - strand, within MPMX19_00428 at 430.494 kb on - strand, within MPMX19_00428 at 430.494 kb on - strand, within MPMX19_00428 at 430.553 kb on + strand, within MPMX19_00428 at 430.553 kb on + strand, within MPMX19_00428 at 430.553 kb on + strand, within MPMX19_00428 at 430.553 kb on + strand, within MPMX19_00428 at 430.553 kb on + strand, within MPMX19_00428 at 430.554 kb on - strand, within MPMX19_00428 at 430.554 kb on - strand, within MPMX19_00428 at 430.554 kb on - strand, within MPMX19_00428 at 430.554 kb on - strand, within MPMX19_00428 at 430.554 kb on - strand, within MPMX19_00428 at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.859 kb on + strand at 430.861 kb on + strand at 430.862 kb on - strand at 430.869 kb on + strand at 430.957 kb on + strand, within MPMX19_00429 at 430.957 kb on + strand, within MPMX19_00429 at 430.957 kb on + strand, within MPMX19_00429 at 430.957 kb on + strand, within MPMX19_00429 at 430.957 kb on + strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.218 kb on + strand at 431.218 kb on - strand at 431.218 kb on - strand at 431.218 kb on - strand at 431.218 kb on - strand at 431.218 kb on - strand at 431.218 kb on - strand at 431.218 kb on - strand at 431.235 kb on + strand at 431.235 kb on + strand at 431.235 kb on + strand at 431.235 kb on + strand at 431.266 kb on + strand at 431.266 kb on + strand at 431.266 kb on + strand at 431.266 kb on + strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.404 kb on + strand, within MPMX19_00430 at 431.404 kb on + strand, within MPMX19_00430 at 431.404 kb on + strand, within MPMX19_00430 at 431.404 kb on + strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.419 kb on + strand, within MPMX19_00430 at 431.419 kb on + strand, within MPMX19_00430 at 431.419 kb on + strand, within MPMX19_00430 at 431.419 kb on + strand, within MPMX19_00430 at 431.419 kb on + strand, within MPMX19_00430 at 431.420 kb on - strand, within MPMX19_00430 at 431.420 kb on - strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.675 kb on - strand at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.729 kb on + strand, within MPMX19_00431 at 431.729 kb on + strand, within MPMX19_00431 at 431.729 kb on + strand, within MPMX19_00431 at 431.729 kb on + strand, within MPMX19_00431 at 431.730 kb on - strand, within MPMX19_00431 at 431.730 kb on - strand, within MPMX19_00431 at 431.842 kb on + strand, within MPMX19_00431 at 431.842 kb on + strand, within MPMX19_00431 at 431.843 kb on - strand, within MPMX19_00431 at 431.843 kb on - strand, within MPMX19_00431 at 431.843 kb on - strand, within MPMX19_00431 at 431.843 kb on - strand, within MPMX19_00431 at 431.843 kb on - strand, within MPMX19_00431
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 430,118 + MPMX19_00428 0.56 +0.8 430,118 + MPMX19_00428 0.56 +1.4 430,119 - MPMX19_00428 0.56 -0.8 430,119 - MPMX19_00428 0.56 -1.1 430,119 - MPMX19_00428 0.56 -0.4 430,119 - MPMX19_00428 0.56 +0.4 430,119 - MPMX19_00428 0.56 +2.0 430,119 - MPMX19_00428 0.56 +0.3 430,119 - MPMX19_00428 0.56 -0.3 430,445 + MPMX19_00428 0.77 +0.3 430,446 - MPMX19_00428 0.78 +1.8 430,446 - MPMX19_00428 0.78 +1.1 430,451 + MPMX19_00428 0.78 -1.4 430,451 + MPMX19_00428 0.78 +0.8 430,451 + MPMX19_00428 0.78 +0.8 430,451 + MPMX19_00428 0.78 +1.0 430,451 + MPMX19_00428 0.78 -1.2 430,451 + MPMX19_00428 0.78 -1.0 430,451 + MPMX19_00428 0.78 +0.6 430,451 + MPMX19_00428 0.78 -0.9 430,451 + MPMX19_00428 0.78 -0.4 430,451 + MPMX19_00428 0.78 -0.4 430,451 + MPMX19_00428 0.78 +1.1 430,451 + MPMX19_00428 0.78 +0.2 430,451 + MPMX19_00428 0.78 -0.8 430,452 - MPMX19_00428 0.78 +0.7 430,452 - MPMX19_00428 0.78 -0.0 430,452 - MPMX19_00428 0.78 -1.2 430,452 - MPMX19_00428 0.78 +0.3 430,452 - MPMX19_00428 0.78 +0.1 430,452 - MPMX19_00428 0.78 -0.2 430,452 - MPMX19_00428 0.78 +0.6 430,452 - MPMX19_00428 0.78 -0.4 430,493 + MPMX19_00428 0.81 -0.4 430,493 + MPMX19_00428 0.81 -0.6 430,493 + MPMX19_00428 0.81 -0.9 430,493 + MPMX19_00428 0.81 +0.8 430,493 + MPMX19_00428 0.81 -1.3 430,493 + MPMX19_00428 0.81 +1.0 430,493 + MPMX19_00428 0.81 -0.0 430,493 + MPMX19_00428 0.81 +0.2 430,493 + MPMX19_00428 0.81 +0.1 430,493 + MPMX19_00428 0.81 +0.1 430,493 + MPMX19_00428 0.81 -1.6 430,493 + MPMX19_00428 0.81 -0.4 430,493 + MPMX19_00428 0.81 -0.9 430,493 + MPMX19_00428 0.81 +0.2 430,493 + MPMX19_00428 0.81 -1.0 430,493 + MPMX19_00428 0.81 -0.6 430,493 + MPMX19_00428 0.81 +0.2 430,493 + MPMX19_00428 0.81 -0.5 430,494 - MPMX19_00428 0.81 +0.8 430,494 - MPMX19_00428 0.81 +1.0 430,494 - MPMX19_00428 0.81 -0.4 430,494 - MPMX19_00428 0.81 +0.7 430,494 - MPMX19_00428 0.81 +0.6 430,494 - MPMX19_00428 0.81 -1.3 430,494 - MPMX19_00428 0.81 -0.8 430,494 - MPMX19_00428 0.81 -1.3 430,494 - MPMX19_00428 0.81 -0.4 430,494 - MPMX19_00428 0.81 -0.3 430,494 - MPMX19_00428 0.81 -0.6 430,494 - MPMX19_00428 0.81 +0.4 430,494 - MPMX19_00428 0.81 -2.0 430,494 - MPMX19_00428 0.81 -1.3 430,494 - MPMX19_00428 0.81 +0.4 430,494 - MPMX19_00428 0.81 -0.2 430,494 - MPMX19_00428 0.81 +0.8 430,553 + MPMX19_00428 0.85 +0.8 430,553 + MPMX19_00428 0.85 +0.1 430,553 + MPMX19_00428 0.85 -0.2 430,553 + MPMX19_00428 0.85 -0.7 430,553 + MPMX19_00428 0.85 +0.6 430,554 - MPMX19_00428 0.85 +0.7 430,554 - MPMX19_00428 0.85 -0.4 430,554 - MPMX19_00428 0.85 -0.2 430,554 - MPMX19_00428 0.85 +0.6 430,554 - MPMX19_00428 0.85 -0.7 430,781 + -1.0 430,781 + +0.6 430,781 + -0.4 430,781 + -0.6 430,781 + -1.1 430,781 + +0.1 430,781 + -0.4 430,781 + -0.6 430,781 + -1.4 430,781 + -0.2 430,781 + -0.7 430,781 + +1.6 430,782 - -2.8 430,782 - +1.0 430,782 - +0.0 430,782 - -0.4 430,782 - +1.0 430,782 - +0.3 430,782 - +0.2 430,782 - -1.0 430,782 - +1.6 430,782 - -2.0 430,859 + +1.0 430,861 + +0.7 430,862 - -1.1 430,869 + +0.7 430,957 + MPMX19_00429 0.24 -1.4 430,957 + MPMX19_00429 0.24 -0.3 430,957 + MPMX19_00429 0.24 -1.8 430,957 + MPMX19_00429 0.24 -0.4 430,957 + MPMX19_00429 0.24 -1.0 430,958 - MPMX19_00429 0.24 -0.7 430,958 - MPMX19_00429 0.24 -1.8 430,958 - MPMX19_00429 0.24 -0.0 430,958 - MPMX19_00429 0.24 -0.1 430,958 - MPMX19_00429 0.24 -0.6 430,958 - MPMX19_00429 0.24 -0.6 430,958 - MPMX19_00429 0.24 -0.3 431,217 + -0.4 431,217 + -0.9 431,217 + +0.2 431,217 + -0.7 431,217 + -1.6 431,217 + +0.6 431,217 + -0.4 431,217 + -1.3 431,217 + -1.3 431,218 + -1.5 431,218 - -0.4 431,218 - -0.2 431,218 - -2.6 431,218 - -1.0 431,218 - -1.0 431,218 - -0.9 431,218 - +0.9 431,235 + -0.4 431,235 + -0.4 431,235 + +0.3 431,235 + -1.3 431,266 + -0.9 431,266 + -1.2 431,266 + +0.6 431,266 + +0.6 431,267 - -0.4 431,267 - +0.8 431,267 - -1.2 431,267 - +0.2 431,267 - +0.3 431,267 - -1.5 431,267 - -0.8 431,267 - -0.6 431,267 - -2.4 431,267 - +0.3 431,267 - -0.9 431,404 + MPMX19_00430 0.43 +0.9 431,404 + MPMX19_00430 0.43 +1.3 431,404 + MPMX19_00430 0.43 +0.4 431,404 + MPMX19_00430 0.43 -0.3 431,405 - MPMX19_00430 0.44 +0.1 431,405 - MPMX19_00430 0.44 -1.8 431,405 - MPMX19_00430 0.44 -1.8 431,405 - MPMX19_00430 0.44 -0.9 431,405 - MPMX19_00430 0.44 -0.5 431,405 - MPMX19_00430 0.44 -0.5 431,405 - MPMX19_00430 0.44 -0.3 431,405 - MPMX19_00430 0.44 +0.2 431,419 + MPMX19_00430 0.47 +0.4 431,419 + MPMX19_00430 0.47 -0.1 431,419 + MPMX19_00430 0.47 +1.1 431,419 + MPMX19_00430 0.47 +0.1 431,419 + MPMX19_00430 0.47 +0.3 431,420 - MPMX19_00430 0.48 +1.1 431,420 - MPMX19_00430 0.48 +0.8 431,488 + MPMX19_00430 0.66 -0.4 431,488 + MPMX19_00430 0.66 -1.8 431,488 + MPMX19_00430 0.66 +0.2 431,488 + MPMX19_00430 0.66 -0.8 431,488 + MPMX19_00430 0.66 +0.6 431,488 + MPMX19_00430 0.66 -0.3 431,488 + MPMX19_00430 0.66 -0.3 431,488 + MPMX19_00430 0.66 +0.5 431,488 + MPMX19_00430 0.66 +0.6 431,488 + MPMX19_00430 0.66 +0.0 431,488 + MPMX19_00430 0.66 -1.4 431,488 + MPMX19_00430 0.66 -0.7 431,489 - MPMX19_00430 0.67 -0.2 431,489 - MPMX19_00430 0.67 +0.2 431,489 - MPMX19_00430 0.67 -0.6 431,489 - MPMX19_00430 0.67 +0.6 431,489 - MPMX19_00430 0.67 -2.7 431,489 - MPMX19_00430 0.67 +0.7 431,489 - MPMX19_00430 0.67 +0.3 431,489 - MPMX19_00430 0.67 -0.3 431,489 - MPMX19_00430 0.67 +0.9 431,489 - MPMX19_00430 0.67 +0.3 431,489 - MPMX19_00430 0.67 -1.0 431,675 - -0.6 431,722 + MPMX19_00431 0.14 +0.4 431,722 + MPMX19_00431 0.14 -0.6 431,722 + MPMX19_00431 0.14 +0.2 431,722 + MPMX19_00431 0.14 -1.5 431,722 + MPMX19_00431 0.14 -1.1 431,722 + MPMX19_00431 0.14 +1.3 431,722 + MPMX19_00431 0.14 -0.5 431,722 + MPMX19_00431 0.14 +0.5 431,722 + MPMX19_00431 0.14 -0.8 431,722 + MPMX19_00431 0.14 +1.1 431,723 - MPMX19_00431 0.14 -0.4 431,723 - MPMX19_00431 0.14 -1.5 431,723 - MPMX19_00431 0.14 -0.5 431,723 - MPMX19_00431 0.14 -0.1 431,723 - MPMX19_00431 0.14 +0.3 431,723 - MPMX19_00431 0.14 -1.6 431,723 - MPMX19_00431 0.14 +0.7 431,723 - MPMX19_00431 0.14 -0.0 431,729 + MPMX19_00431 0.15 -0.0 431,729 + MPMX19_00431 0.15 +0.5 431,729 + MPMX19_00431 0.15 +1.3 431,729 + MPMX19_00431 0.15 +0.7 431,730 - MPMX19_00431 0.15 -1.0 431,730 - MPMX19_00431 0.15 -0.0 431,842 + MPMX19_00431 0.31 -2.3 431,842 + MPMX19_00431 0.31 -1.0 431,843 - MPMX19_00431 0.31 -0.9 431,843 - MPMX19_00431 0.31 +0.2 431,843 - MPMX19_00431 0.31 -1.0 431,843 - MPMX19_00431 0.31 +0.5 431,843 - MPMX19_00431 0.31 -1.3
Or see this region's nucleotide sequence