Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00308 and MPMX19_00309 are separated by 9 nucleotides MPMX19_00309 and MPMX19_00310 are separated by 213 nucleotides
MPMX19_00308: MPMX19_00308 - NAD-dependent methanol dehydrogenase, at 310,780 to 312,096
_00308
MPMX19_00309: MPMX19_00309 - hypothetical protein, at 312,106 to 312,552
_00309
MPMX19_00310: MPMX19_00310 - 3-methylmercaptopropionyl-CoA dehydrogenase, at 312,766 to 314,562
_00310
Position (kb) 312
313 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 311.152 kb on + strand, within MPMX19_00308 at 311.152 kb on + strand, within MPMX19_00308 at 311.153 kb on - strand, within MPMX19_00308 at 311.153 kb on - strand, within MPMX19_00308 at 311.153 kb on - strand, within MPMX19_00308 at 311.153 kb on - strand, within MPMX19_00308 at 311.153 kb on - strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.182 kb on + strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.183 kb on - strand, within MPMX19_00308 at 311.338 kb on + strand, within MPMX19_00308 at 311.338 kb on + strand, within MPMX19_00308 at 311.338 kb on + strand, within MPMX19_00308 at 311.338 kb on + strand, within MPMX19_00308 at 311.338 kb on + strand, within MPMX19_00308 at 311.338 kb on + strand, within MPMX19_00308 at 311.339 kb on - strand, within MPMX19_00308 at 311.339 kb on - strand, within MPMX19_00308 at 311.339 kb on - strand, within MPMX19_00308 at 311.339 kb on - strand, within MPMX19_00308 at 311.339 kb on - strand, within MPMX19_00308 at 311.506 kb on + strand, within MPMX19_00308 at 311.506 kb on + strand, within MPMX19_00308 at 311.507 kb on - strand, within MPMX19_00308 at 311.507 kb on - strand, within MPMX19_00308 at 311.692 kb on + strand, within MPMX19_00308 at 311.692 kb on + strand, within MPMX19_00308 at 311.692 kb on + strand, within MPMX19_00308 at 311.692 kb on + strand, within MPMX19_00308 at 311.693 kb on - strand, within MPMX19_00308 at 311.693 kb on - strand, within MPMX19_00308 at 311.734 kb on + strand, within MPMX19_00308 at 311.735 kb on - strand, within MPMX19_00308 at 311.735 kb on - strand, within MPMX19_00308 at 311.735 kb on - strand, within MPMX19_00308 at 312.070 kb on + strand at 312.070 kb on + strand at 312.070 kb on + strand at 312.070 kb on + strand at 312.070 kb on + strand at 312.070 kb on + strand at 312.071 kb on - strand at 312.071 kb on - strand at 312.071 kb on - strand at 312.071 kb on - strand at 312.088 kb on + strand at 312.088 kb on + strand at 312.089 kb on - strand at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.200 kb on + strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.201 kb on - strand, within MPMX19_00309 at 312.314 kb on + strand, within MPMX19_00309 at 312.314 kb on + strand, within MPMX19_00309 at 312.314 kb on + strand, within MPMX19_00309 at 312.314 kb on + strand, within MPMX19_00309 at 312.314 kb on + strand, within MPMX19_00309 at 312.315 kb on - strand, within MPMX19_00309 at 312.315 kb on - strand, within MPMX19_00309 at 312.315 kb on - strand, within MPMX19_00309 at 312.455 kb on + strand, within MPMX19_00309 at 312.455 kb on + strand, within MPMX19_00309 at 312.455 kb on + strand, within MPMX19_00309 at 312.455 kb on + strand, within MPMX19_00309 at 312.455 kb on + strand, within MPMX19_00309 at 312.455 kb on + strand, within MPMX19_00309 at 312.456 kb on - strand, within MPMX19_00309 at 312.456 kb on - strand, within MPMX19_00309 at 312.456 kb on - strand, within MPMX19_00309 at 312.597 kb on + strand at 312.598 kb on - strand at 312.598 kb on - strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.630 kb on + strand at 312.631 kb on - strand at 312.631 kb on - strand at 312.631 kb on - strand at 312.631 kb on - strand at 312.631 kb on - strand at 312.631 kb on - strand at 312.631 kb on - strand at 312.631 kb on - strand at 312.860 kb on + strand at 312.860 kb on + strand at 312.861 kb on - strand at 312.861 kb on - strand at 312.861 kb on - strand at 312.861 kb on - strand at 312.975 kb on + strand, within MPMX19_00310 at 312.975 kb on + strand, within MPMX19_00310 at 312.975 kb on + strand, within MPMX19_00310 at 312.976 kb on - strand, within MPMX19_00310 at 312.992 kb on + strand, within MPMX19_00310 at 312.992 kb on + strand, within MPMX19_00310 at 312.992 kb on + strand, within MPMX19_00310 at 312.993 kb on - strand, within MPMX19_00310 at 312.993 kb on - strand, within MPMX19_00310 at 313.250 kb on + strand, within MPMX19_00310 at 313.250 kb on + strand, within MPMX19_00310 at 313.250 kb on + strand, within MPMX19_00310 at 313.250 kb on + strand, within MPMX19_00310 at 313.250 kb on + strand, within MPMX19_00310 at 313.250 kb on + strand, within MPMX19_00310 at 313.251 kb on - strand, within MPMX19_00310 at 313.251 kb on - strand, within MPMX19_00310 at 313.251 kb on - strand, within MPMX19_00310 at 313.251 kb on - strand, within MPMX19_00310 at 313.251 kb on - strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.472 kb on + strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310 at 313.473 kb on - strand, within MPMX19_00310
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 311,152 + MPMX19_00308 0.28 -0.0 311,152 + MPMX19_00308 0.28 +0.8 311,153 - MPMX19_00308 0.28 +1.0 311,153 - MPMX19_00308 0.28 +0.3 311,153 - MPMX19_00308 0.28 +0.6 311,153 - MPMX19_00308 0.28 +0.2 311,153 - MPMX19_00308 0.28 +0.7 311,182 + MPMX19_00308 0.31 -1.0 311,182 + MPMX19_00308 0.31 -1.0 311,182 + MPMX19_00308 0.31 -0.6 311,182 + MPMX19_00308 0.31 +0.1 311,182 + MPMX19_00308 0.31 -0.1 311,182 + MPMX19_00308 0.31 -0.5 311,182 + MPMX19_00308 0.31 -0.5 311,182 + MPMX19_00308 0.31 -0.2 311,182 + MPMX19_00308 0.31 -0.6 311,182 + MPMX19_00308 0.31 -0.7 311,182 + MPMX19_00308 0.31 +0.4 311,182 + MPMX19_00308 0.31 -1.2 311,182 + MPMX19_00308 0.31 -0.9 311,182 + MPMX19_00308 0.31 +0.5 311,182 + MPMX19_00308 0.31 -0.1 311,182 + MPMX19_00308 0.31 -0.6 311,182 + MPMX19_00308 0.31 +1.4 311,182 + MPMX19_00308 0.31 -0.2 311,182 + MPMX19_00308 0.31 -0.2 311,183 - MPMX19_00308 0.31 -1.4 311,183 - MPMX19_00308 0.31 -1.0 311,183 - MPMX19_00308 0.31 +0.3 311,183 - MPMX19_00308 0.31 +0.5 311,183 - MPMX19_00308 0.31 -1.4 311,183 - MPMX19_00308 0.31 +0.8 311,183 - MPMX19_00308 0.31 -0.2 311,183 - MPMX19_00308 0.31 -0.1 311,183 - MPMX19_00308 0.31 +0.7 311,183 - MPMX19_00308 0.31 -2.0 311,183 - MPMX19_00308 0.31 +1.8 311,183 - MPMX19_00308 0.31 +0.8 311,183 - MPMX19_00308 0.31 +1.5 311,183 - MPMX19_00308 0.31 +0.2 311,183 - MPMX19_00308 0.31 -1.2 311,183 - MPMX19_00308 0.31 +0.5 311,338 + MPMX19_00308 0.42 -0.7 311,338 + MPMX19_00308 0.42 +0.7 311,338 + MPMX19_00308 0.42 -0.2 311,338 + MPMX19_00308 0.42 +1.8 311,338 + MPMX19_00308 0.42 +0.1 311,338 + MPMX19_00308 0.42 -1.4 311,339 - MPMX19_00308 0.42 -0.4 311,339 - MPMX19_00308 0.42 -0.3 311,339 - MPMX19_00308 0.42 -0.3 311,339 - MPMX19_00308 0.42 -1.3 311,339 - MPMX19_00308 0.42 -1.0 311,506 + MPMX19_00308 0.55 -0.6 311,506 + MPMX19_00308 0.55 +0.2 311,507 - MPMX19_00308 0.55 +0.6 311,507 - MPMX19_00308 0.55 +1.6 311,692 + MPMX19_00308 0.69 -1.8 311,692 + MPMX19_00308 0.69 +1.3 311,692 + MPMX19_00308 0.69 +0.8 311,692 + MPMX19_00308 0.69 +0.1 311,693 - MPMX19_00308 0.69 -1.2 311,693 - MPMX19_00308 0.69 -0.5 311,734 + MPMX19_00308 0.72 +1.3 311,735 - MPMX19_00308 0.73 +0.4 311,735 - MPMX19_00308 0.73 -1.4 311,735 - MPMX19_00308 0.73 +0.2 312,070 + -0.6 312,070 + +0.1 312,070 + +0.8 312,070 + -1.2 312,070 + +0.1 312,070 + -0.2 312,071 - -0.4 312,071 - +0.7 312,071 - -1.8 312,071 - +1.0 312,088 + -0.6 312,088 + -1.1 312,089 - +0.3 312,200 + MPMX19_00309 0.21 +0.4 312,200 + MPMX19_00309 0.21 +1.2 312,200 + MPMX19_00309 0.21 -0.7 312,200 + MPMX19_00309 0.21 +0.6 312,200 + MPMX19_00309 0.21 -0.3 312,200 + MPMX19_00309 0.21 -0.4 312,200 + MPMX19_00309 0.21 +0.1 312,200 + MPMX19_00309 0.21 +0.9 312,200 + MPMX19_00309 0.21 +1.8 312,200 + MPMX19_00309 0.21 -0.0 312,200 + MPMX19_00309 0.21 -1.7 312,200 + MPMX19_00309 0.21 +0.6 312,200 + MPMX19_00309 0.21 +1.8 312,200 + MPMX19_00309 0.21 -0.3 312,201 - MPMX19_00309 0.21 -0.2 312,201 - MPMX19_00309 0.21 -0.9 312,201 - MPMX19_00309 0.21 +1.4 312,201 - MPMX19_00309 0.21 +0.2 312,201 - MPMX19_00309 0.21 +0.6 312,201 - MPMX19_00309 0.21 -0.4 312,201 - MPMX19_00309 0.21 +0.5 312,201 - MPMX19_00309 0.21 -0.6 312,201 - MPMX19_00309 0.21 +0.1 312,201 - MPMX19_00309 0.21 +1.1 312,201 - MPMX19_00309 0.21 -0.7 312,201 - MPMX19_00309 0.21 -0.4 312,201 - MPMX19_00309 0.21 -1.7 312,201 - MPMX19_00309 0.21 -0.0 312,314 + MPMX19_00309 0.47 +1.2 312,314 + MPMX19_00309 0.47 +0.1 312,314 + MPMX19_00309 0.47 -1.6 312,314 + MPMX19_00309 0.47 +0.6 312,314 + MPMX19_00309 0.47 -0.3 312,315 - MPMX19_00309 0.47 -0.8 312,315 - MPMX19_00309 0.47 +0.6 312,315 - MPMX19_00309 0.47 -1.7 312,455 + MPMX19_00309 0.78 -1.7 312,455 + MPMX19_00309 0.78 +0.5 312,455 + MPMX19_00309 0.78 +0.9 312,455 + MPMX19_00309 0.78 -1.3 312,455 + MPMX19_00309 0.78 -0.4 312,455 + MPMX19_00309 0.78 -0.2 312,456 - MPMX19_00309 0.78 +1.5 312,456 - MPMX19_00309 0.78 +0.4 312,456 - MPMX19_00309 0.78 +0.0 312,597 + +1.1 312,598 - -0.9 312,598 - +0.3 312,630 + +0.5 312,630 + -1.0 312,630 + -1.2 312,630 + -1.5 312,630 + +0.7 312,630 + -0.6 312,630 + -0.6 312,630 + +1.4 312,630 + -1.1 312,630 + +0.3 312,630 + -0.9 312,630 + -2.8 312,630 + +0.5 312,631 - +0.2 312,631 - +0.3 312,631 - +0.2 312,631 - +1.1 312,631 - -0.4 312,631 - +1.0 312,631 - -0.2 312,631 - +0.3 312,860 + -0.4 312,860 + -0.7 312,861 - -1.1 312,861 - -1.3 312,861 - -0.2 312,861 - -0.5 312,975 + MPMX19_00310 0.12 +0.7 312,975 + MPMX19_00310 0.12 -0.1 312,975 + MPMX19_00310 0.12 -2.1 312,976 - MPMX19_00310 0.12 -0.1 312,992 + MPMX19_00310 0.13 +1.5 312,992 + MPMX19_00310 0.13 -0.4 312,992 + MPMX19_00310 0.13 -0.3 312,993 - MPMX19_00310 0.13 -0.0 312,993 - MPMX19_00310 0.13 -0.1 313,250 + MPMX19_00310 0.27 -0.5 313,250 + MPMX19_00310 0.27 -0.0 313,250 + MPMX19_00310 0.27 -0.4 313,250 + MPMX19_00310 0.27 -1.6 313,250 + MPMX19_00310 0.27 -0.6 313,250 + MPMX19_00310 0.27 -0.1 313,251 - MPMX19_00310 0.27 +1.6 313,251 - MPMX19_00310 0.27 -0.3 313,251 - MPMX19_00310 0.27 -1.4 313,251 - MPMX19_00310 0.27 -2.8 313,251 - MPMX19_00310 0.27 -1.9 313,472 + MPMX19_00310 0.39 +0.5 313,472 + MPMX19_00310 0.39 +0.7 313,472 + MPMX19_00310 0.39 -0.2 313,472 + MPMX19_00310 0.39 -0.3 313,472 + MPMX19_00310 0.39 +0.1 313,472 + MPMX19_00310 0.39 +1.4 313,472 + MPMX19_00310 0.39 -1.7 313,472 + MPMX19_00310 0.39 +1.3 313,472 + MPMX19_00310 0.39 +0.3 313,472 + MPMX19_00310 0.39 -1.2 313,472 + MPMX19_00310 0.39 -0.1 313,473 - MPMX19_00310 0.39 -0.0 313,473 - MPMX19_00310 0.39 +0.8 313,473 - MPMX19_00310 0.39 +0.3 313,473 - MPMX19_00310 0.39 -0.2 313,473 - MPMX19_00310 0.39 -0.6 313,473 - MPMX19_00310 0.39 -0.9 313,473 - MPMX19_00310 0.39 -0.1 313,473 - MPMX19_00310 0.39 -2.0 313,473 - MPMX19_00310 0.39 +0.5 313,473 - MPMX19_00310 0.39 +1.4 313,473 - MPMX19_00310 0.39 -0.4 313,473 - MPMX19_00310 0.39 +0.7 313,473 - MPMX19_00310 0.39 -0.0 313,473 - MPMX19_00310 0.39 +0.3 313,473 - MPMX19_00310 0.39 -1.9
Or see this region's nucleotide sequence