Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00265 and MPMX19_00266 are separated by 115 nucleotides MPMX19_00266 and MPMX19_00267 are separated by 51 nucleotides MPMX19_00267 and MPMX19_00268 are separated by 251 nucleotides
MPMX19_00265: MPMX19_00265 - hypothetical protein, at 266,189 to 268,357
_00265
MPMX19_00266: MPMX19_00266 - hypothetical protein, at 268,473 to 268,730
_00266
MPMX19_00267: MPMX19_00267 - hypothetical protein, at 268,782 to 268,967
_00267
MPMX19_00268: MPMX19_00268 - Transcriptional regulatory protein OmpR, at 269,219 to 269,932
_00268
Position (kb) 268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 267.630 kb on + strand, within MPMX19_00265 at 267.630 kb on + strand, within MPMX19_00265 at 267.630 kb on + strand, within MPMX19_00265 at 267.630 kb on + strand, within MPMX19_00265 at 267.630 kb on + strand, within MPMX19_00265 at 267.630 kb on + strand, within MPMX19_00265 at 267.631 kb on - strand, within MPMX19_00265 at 267.631 kb on - strand, within MPMX19_00265 at 267.631 kb on - strand, within MPMX19_00265 at 267.631 kb on - strand, within MPMX19_00265 at 267.631 kb on - strand, within MPMX19_00265 at 267.631 kb on - strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.663 kb on + strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 267.664 kb on - strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.128 kb on + strand, within MPMX19_00265 at 268.129 kb on - strand, within MPMX19_00265 at 268.129 kb on - strand, within MPMX19_00265 at 268.129 kb on - strand, within MPMX19_00265 at 268.129 kb on - strand, within MPMX19_00265 at 268.129 kb on - strand, within MPMX19_00265 at 268.129 kb on - strand, within MPMX19_00265 at 268.215 kb on + strand at 268.215 kb on + strand at 268.215 kb on + strand at 268.215 kb on + strand at 268.215 kb on + strand at 268.216 kb on - strand at 268.216 kb on - strand at 268.224 kb on + strand at 268.224 kb on + strand at 268.225 kb on - strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.396 kb on + strand at 268.397 kb on - strand at 268.397 kb on - strand at 268.397 kb on - strand at 268.397 kb on - strand at 268.397 kb on - strand at 268.397 kb on - strand at 268.418 kb on + strand at 268.418 kb on + strand at 268.418 kb on + strand at 268.419 kb on - strand at 268.419 kb on - strand at 268.447 kb on - strand at 268.529 kb on + strand, within MPMX19_00266 at 268.529 kb on + strand, within MPMX19_00266 at 268.529 kb on + strand, within MPMX19_00266 at 268.529 kb on + strand, within MPMX19_00266 at 268.530 kb on - strand, within MPMX19_00266 at 268.530 kb on - strand, within MPMX19_00266 at 268.530 kb on - strand, within MPMX19_00266 at 268.888 kb on + strand, within MPMX19_00267 at 268.888 kb on + strand, within MPMX19_00267 at 268.888 kb on + strand, within MPMX19_00267 at 268.888 kb on + strand, within MPMX19_00267 at 268.888 kb on + strand, within MPMX19_00267 at 268.889 kb on - strand, within MPMX19_00267 at 268.889 kb on - strand, within MPMX19_00267 at 268.889 kb on - strand, within MPMX19_00267 at 268.889 kb on - strand, within MPMX19_00267 at 268.889 kb on - strand, within MPMX19_00267 at 268.889 kb on - strand, within MPMX19_00267 at 269.045 kb on - strand at 269.045 kb on - strand at 269.067 kb on - strand at 269.083 kb on + strand at 269.083 kb on + strand at 269.083 kb on + strand at 269.083 kb on + strand at 269.083 kb on + strand at 269.084 kb on - strand at 269.084 kb on - strand at 269.084 kb on - strand at 269.084 kb on - strand at 269.084 kb on - strand at 269.084 kb on - strand at 269.084 kb on - strand at 269.084 kb on - strand at 269.084 kb on - strand at 269.089 kb on + strand at 269.089 kb on + strand at 269.089 kb on + strand at 269.089 kb on + strand at 269.089 kb on + strand at 269.089 kb on + strand at 269.089 kb on + strand at 269.089 kb on + strand at 269.089 kb on + strand at 269.089 kb on + strand at 269.090 kb on - strand at 269.090 kb on - strand at 269.090 kb on - strand at 269.090 kb on - strand at 269.090 kb on - strand at 269.090 kb on - strand at 269.163 kb on + strand at 269.163 kb on + strand at 269.163 kb on + strand at 269.163 kb on + strand at 269.163 kb on + strand at 269.163 kb on + strand at 269.163 kb on + strand at 269.163 kb on + strand at 269.164 kb on - strand at 269.164 kb on - strand at 269.164 kb on - strand at 269.164 kb on - strand at 269.164 kb on - strand at 269.164 kb on - strand at 269.164 kb on - strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.193 kb on + strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.194 kb on - strand at 269.211 kb on + strand at 269.211 kb on + strand at 269.211 kb on + strand at 269.211 kb on + strand at 269.211 kb on + strand at 269.211 kb on + strand at 269.211 kb on + strand at 269.211 kb on + strand at 269.211 kb on + strand at 269.212 kb on - strand at 269.212 kb on - strand at 269.212 kb on - strand at 269.212 kb on - strand at 269.212 kb on - strand at 269.212 kb on - strand at 269.212 kb on - strand at 269.212 kb on - strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.224 kb on + strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.225 kb on - strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.273 kb on + strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.274 kb on - strand at 269.315 kb on - strand, within MPMX19_00268 at 269.507 kb on + strand, within MPMX19_00268 at 269.507 kb on + strand, within MPMX19_00268 at 269.507 kb on + strand, within MPMX19_00268
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 267,630 + MPMX19_00265 0.66 +0.4 267,630 + MPMX19_00265 0.66 +0.0 267,630 + MPMX19_00265 0.66 -1.5 267,630 + MPMX19_00265 0.66 -0.3 267,630 + MPMX19_00265 0.66 +0.0 267,630 + MPMX19_00265 0.66 -0.2 267,631 - MPMX19_00265 0.66 -1.0 267,631 - MPMX19_00265 0.66 +0.0 267,631 - MPMX19_00265 0.66 -0.7 267,631 - MPMX19_00265 0.66 -0.0 267,631 - MPMX19_00265 0.66 -0.4 267,631 - MPMX19_00265 0.66 -0.3 267,663 + MPMX19_00265 0.68 -0.1 267,663 + MPMX19_00265 0.68 -0.2 267,663 + MPMX19_00265 0.68 -0.3 267,663 + MPMX19_00265 0.68 -0.5 267,663 + MPMX19_00265 0.68 +2.1 267,663 + MPMX19_00265 0.68 -0.0 267,663 + MPMX19_00265 0.68 -0.8 267,663 + MPMX19_00265 0.68 -1.1 267,663 + MPMX19_00265 0.68 +1.8 267,663 + MPMX19_00265 0.68 +0.6 267,663 + MPMX19_00265 0.68 +0.3 267,663 + MPMX19_00265 0.68 -1.2 267,663 + MPMX19_00265 0.68 +0.2 267,663 + MPMX19_00265 0.68 -0.4 267,663 + MPMX19_00265 0.68 -0.6 267,664 - MPMX19_00265 0.68 -0.5 267,664 - MPMX19_00265 0.68 -0.7 267,664 - MPMX19_00265 0.68 +1.0 267,664 - MPMX19_00265 0.68 -0.7 267,664 - MPMX19_00265 0.68 -0.5 267,664 - MPMX19_00265 0.68 +0.4 267,664 - MPMX19_00265 0.68 +0.4 267,664 - MPMX19_00265 0.68 +0.3 267,664 - MPMX19_00265 0.68 +0.9 267,664 - MPMX19_00265 0.68 +0.4 267,664 - MPMX19_00265 0.68 +0.0 267,664 - MPMX19_00265 0.68 -0.3 267,664 - MPMX19_00265 0.68 -0.2 267,664 - MPMX19_00265 0.68 -0.6 267,664 - MPMX19_00265 0.68 +0.4 267,664 - MPMX19_00265 0.68 -2.3 267,664 - MPMX19_00265 0.68 +0.1 267,664 - MPMX19_00265 0.68 +1.0 267,664 - MPMX19_00265 0.68 -0.2 268,128 + MPMX19_00265 0.89 -2.3 268,128 + MPMX19_00265 0.89 -0.0 268,128 + MPMX19_00265 0.89 -0.3 268,128 + MPMX19_00265 0.89 -0.4 268,128 + MPMX19_00265 0.89 -0.0 268,128 + MPMX19_00265 0.89 -0.3 268,128 + MPMX19_00265 0.89 -0.8 268,128 + MPMX19_00265 0.89 +1.6 268,128 + MPMX19_00265 0.89 -1.0 268,128 + MPMX19_00265 0.89 +0.0 268,128 + MPMX19_00265 0.89 +0.0 268,128 + MPMX19_00265 0.89 +0.9 268,128 + MPMX19_00265 0.89 +0.3 268,128 + MPMX19_00265 0.89 +1.3 268,129 - MPMX19_00265 0.89 +0.0 268,129 - MPMX19_00265 0.89 -1.4 268,129 - MPMX19_00265 0.89 +0.8 268,129 - MPMX19_00265 0.89 +0.3 268,129 - MPMX19_00265 0.89 +1.2 268,129 - MPMX19_00265 0.89 -1.8 268,215 + +0.7 268,215 + +0.6 268,215 + -0.3 268,215 + -0.9 268,215 + +0.2 268,216 - -0.3 268,216 - +0.8 268,224 + +1.2 268,224 + -0.9 268,225 - -0.6 268,396 + +0.6 268,396 + -0.3 268,396 + -1.7 268,396 + -0.4 268,396 + -0.6 268,396 + +0.6 268,396 + -0.2 268,396 + +0.7 268,396 + -0.0 268,396 + -1.8 268,396 + -0.7 268,396 + +0.5 268,397 - -0.4 268,397 - -1.2 268,397 - -1.8 268,397 - -1.2 268,397 - -0.4 268,397 - -1.1 268,418 + +1.3 268,418 + -1.1 268,418 + +1.6 268,419 - +0.3 268,419 - +0.5 268,447 - +0.3 268,529 + MPMX19_00266 0.22 -1.4 268,529 + MPMX19_00266 0.22 -0.5 268,529 + MPMX19_00266 0.22 +1.2 268,529 + MPMX19_00266 0.22 -1.0 268,530 - MPMX19_00266 0.22 -1.1 268,530 - MPMX19_00266 0.22 -1.6 268,530 - MPMX19_00266 0.22 +0.0 268,888 + MPMX19_00267 0.57 -1.4 268,888 + MPMX19_00267 0.57 +0.3 268,888 + MPMX19_00267 0.57 -2.0 268,888 + MPMX19_00267 0.57 -1.6 268,888 + MPMX19_00267 0.57 +0.3 268,889 - MPMX19_00267 0.58 -0.4 268,889 - MPMX19_00267 0.58 -0.7 268,889 - MPMX19_00267 0.58 -0.5 268,889 - MPMX19_00267 0.58 +0.7 268,889 - MPMX19_00267 0.58 +1.9 268,889 - MPMX19_00267 0.58 -0.5 269,045 - -0.1 269,045 - -0.8 269,067 - -1.0 269,083 + +0.0 269,083 + -1.1 269,083 + -0.3 269,083 + -0.0 269,083 + -0.8 269,084 - -0.4 269,084 - -1.1 269,084 - -0.2 269,084 - +0.2 269,084 - -0.7 269,084 - -0.4 269,084 - -1.8 269,084 - +0.4 269,084 - -0.1 269,089 + -0.8 269,089 + -0.6 269,089 + -1.2 269,089 + -0.5 269,089 + -0.2 269,089 + -1.7 269,089 + +1.6 269,089 + +0.3 269,089 + -2.3 269,089 + -0.8 269,090 - +0.4 269,090 - +1.8 269,090 - +1.3 269,090 - +0.8 269,090 - +0.4 269,090 - +0.4 269,163 + -1.2 269,163 + -0.8 269,163 + +1.4 269,163 + -0.2 269,163 + -0.6 269,163 + -0.6 269,163 + -1.0 269,163 + +0.2 269,164 - +0.0 269,164 - +1.4 269,164 - -1.1 269,164 - +1.0 269,164 - -0.3 269,164 - +0.1 269,164 - +1.4 269,193 + -1.6 269,193 + +0.2 269,193 + +0.6 269,193 + +0.9 269,193 + +0.6 269,193 + -0.2 269,193 + -1.4 269,193 + -1.6 269,193 + -0.9 269,193 + -0.2 269,193 + +1.1 269,193 + +0.4 269,193 + -0.3 269,194 - +0.6 269,194 - -0.6 269,194 - -1.0 269,194 - -2.0 269,194 - +0.2 269,194 - -0.3 269,194 - +0.2 269,194 - -1.7 269,194 - +1.0 269,194 - -1.6 269,194 - +0.0 269,194 - +0.7 269,194 - -0.7 269,194 - -0.7 269,194 - -0.4 269,194 - -0.1 269,194 - +3.0 269,194 - -1.7 269,194 - -1.6 269,194 - +0.3 269,194 - -0.5 269,211 + +1.1 269,211 + -0.1 269,211 + +0.6 269,211 + -1.0 269,211 + -0.3 269,211 + -0.1 269,211 + -0.2 269,211 + +0.0 269,211 + +0.1 269,212 - -1.0 269,212 - +0.9 269,212 - -1.0 269,212 - +0.3 269,212 - -0.4 269,212 - +0.8 269,212 - -0.5 269,212 - -0.6 269,224 + +0.2 269,224 + -2.0 269,224 + -1.3 269,224 + -0.4 269,224 + -0.1 269,224 + -0.6 269,224 + +0.0 269,224 + -2.1 269,224 + -0.4 269,224 + +0.3 269,224 + +0.0 269,224 + +0.8 269,224 + -1.1 269,224 + -0.8 269,224 + -1.0 269,224 + +0.2 269,224 + -0.9 269,224 + -0.4 269,225 - -0.6 269,225 - +1.0 269,225 - -0.5 269,225 - -0.7 269,225 - +1.4 269,225 - +0.5 269,225 - -1.6 269,225 - +0.8 269,225 - -1.1 269,225 - -0.8 269,225 - +0.0 269,225 - -1.8 269,273 + +0.0 269,273 + +0.5 269,273 + +0.6 269,273 + -0.1 269,273 + -0.2 269,273 + +1.0 269,273 + +0.3 269,273 + -0.2 269,273 + -0.1 269,273 + -0.6 269,273 + -0.9 269,273 + -1.4 269,273 + -0.2 269,273 + -1.0 269,273 + -0.3 269,273 + -1.0 269,273 + -0.3 269,273 + +1.6 269,273 + -0.4 269,273 + +0.9 269,273 + +0.5 269,274 - +1.6 269,274 - +0.3 269,274 - +0.3 269,274 - -0.7 269,274 - -0.0 269,274 - -0.7 269,274 - -1.7 269,274 - -0.8 269,274 - +0.9 269,274 - -2.8 269,274 - -1.2 269,274 - +1.0 269,274 - +0.6 269,274 - -0.4 269,274 - -0.4 269,274 - -0.1 269,274 - +1.6 269,274 - +1.2 269,274 - -0.6 269,274 - -1.2 269,274 - +0.3 269,274 - -1.3 269,274 - +0.6 269,274 - +0.0 269,274 - +1.6 269,274 - -0.2 269,274 - +1.1 269,274 - +0.3 269,315 - MPMX19_00268 0.13 +0.2 269,507 + MPMX19_00268 0.40 -1.7 269,507 + MPMX19_00268 0.40 -1.6 269,507 + MPMX19_00268 0.40 +0.5
Or see this region's nucleotide sequence