Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00059 and MPMX19_00060 are separated by 79 nucleotides MPMX19_00060 and MPMX19_00061 are separated by 10 nucleotides MPMX19_00061 and MPMX19_00062 are separated by 66 nucleotides
MPMX19_00059: MPMX19_00059 - hypothetical protein, at 62,975 to 63,505
_00059
MPMX19_00060: MPMX19_00060 - hypothetical protein, at 63,585 to 63,932
_00060
MPMX19_00061: MPMX19_00061 - L-lysine 2,3-aminomutase, at 63,943 to 64,980
_00061
MPMX19_00062: MPMX19_00062 - Glycerophosphodiester phosphodiesterase, cytoplasmic, at 65,047 to 65,790
_00062
Position (kb) 63
64
65 Strain fitness (log2 ratio) -2
-1
0
1
2 at 62.962 kb on + strand at 62.962 kb on + strand at 62.963 kb on - strand at 62.963 kb on - strand at 62.963 kb on - strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.991 kb on - strand at 62.991 kb on - strand at 62.991 kb on - strand at 62.991 kb on - strand at 62.991 kb on - strand at 62.991 kb on - strand at 62.991 kb on - strand at 62.991 kb on - strand at 62.991 kb on - strand at 62.991 kb on - strand at 62.991 kb on - strand at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.287 kb on + strand, within MPMX19_00059 at 63.287 kb on + strand, within MPMX19_00059 at 63.287 kb on + strand, within MPMX19_00059 at 63.287 kb on + strand, within MPMX19_00059 at 63.288 kb on - strand, within MPMX19_00059 at 63.288 kb on - strand, within MPMX19_00059 at 63.288 kb on - strand, within MPMX19_00059 at 63.288 kb on - strand, within MPMX19_00059 at 63.288 kb on - strand, within MPMX19_00059 at 63.288 kb on - strand, within MPMX19_00059 at 63.288 kb on - strand, within MPMX19_00059 at 63.506 kb on + strand at 63.514 kb on + strand at 63.562 kb on + strand at 63.562 kb on + strand at 63.562 kb on + strand at 63.562 kb on + strand at 63.563 kb on - strand at 63.584 kb on + strand at 63.584 kb on + strand at 63.584 kb on + strand at 63.584 kb on + strand at 63.584 kb on + strand at 63.584 kb on + strand at 63.584 kb on + strand at 63.584 kb on + strand at 63.584 kb on + strand at 63.585 kb on - strand at 63.585 kb on - strand at 63.585 kb on - strand at 63.585 kb on - strand at 63.633 kb on + strand, within MPMX19_00060 at 63.633 kb on + strand, within MPMX19_00060 at 63.633 kb on + strand, within MPMX19_00060 at 63.633 kb on + strand, within MPMX19_00060 at 63.633 kb on + strand, within MPMX19_00060 at 63.633 kb on + strand, within MPMX19_00060 at 63.633 kb on + strand, within MPMX19_00060 at 63.633 kb on + strand, within MPMX19_00060 at 63.633 kb on + strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.694 kb on + strand, within MPMX19_00060 at 63.694 kb on + strand, within MPMX19_00060 at 63.695 kb on - strand, within MPMX19_00060 at 63.954 kb on - strand at 64.067 kb on + strand, within MPMX19_00061 at 64.067 kb on + strand, within MPMX19_00061 at 64.067 kb on + strand, within MPMX19_00061 at 64.185 kb on - strand, within MPMX19_00061 at 64.185 kb on - strand, within MPMX19_00061 at 64.185 kb on - strand, within MPMX19_00061 at 64.584 kb on - strand, within MPMX19_00061 at 64.667 kb on + strand, within MPMX19_00061 at 64.788 kb on - strand, within MPMX19_00061 at 64.811 kb on + strand, within MPMX19_00061 at 64.811 kb on + strand, within MPMX19_00061 at 64.812 kb on - strand, within MPMX19_00061 at 64.812 kb on - strand, within MPMX19_00061 at 64.812 kb on - strand, within MPMX19_00061 at 64.820 kb on + strand, within MPMX19_00061 at 64.821 kb on - strand, within MPMX19_00061 at 64.821 kb on - strand, within MPMX19_00061 at 64.952 kb on - strand at 64.952 kb on - strand at 64.952 kb on - strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.032 kb on - strand at 65.032 kb on - strand at 65.032 kb on - strand at 65.032 kb on - strand at 65.032 kb on - strand at 65.032 kb on - strand at 65.032 kb on - strand at 65.032 kb on - strand at 65.223 kb on + strand, within MPMX19_00062 at 65.543 kb on - strand, within MPMX19_00062 at 65.680 kb on + strand, within MPMX19_00062 at 65.680 kb on + strand, within MPMX19_00062 at 65.680 kb on + strand, within MPMX19_00062 at 65.680 kb on + strand, within MPMX19_00062 at 65.680 kb on + strand, within MPMX19_00062 at 65.680 kb on + strand, within MPMX19_00062 at 65.680 kb on + strand, within MPMX19_00062 at 65.681 kb on - strand, within MPMX19_00062 at 65.681 kb on - strand, within MPMX19_00062 at 65.681 kb on - strand, within MPMX19_00062 at 65.681 kb on - strand, within MPMX19_00062 at 65.827 kb on - strand at 65.827 kb on - strand at 65.827 kb on - strand at 65.827 kb on - strand at 65.827 kb on - strand at 65.917 kb on + strand at 65.917 kb on + strand at 65.917 kb on + strand at 65.917 kb on + strand at 65.919 kb on + strand at 65.919 kb on + strand at 65.919 kb on + strand at 65.921 kb on + strand at 65.921 kb on + strand at 65.921 kb on + strand at 65.921 kb on + strand at 65.921 kb on + strand at 65.921 kb on + strand at 65.921 kb on + strand at 65.921 kb on + strand at 65.921 kb on + strand at 65.921 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 62,962 + +0.6 62,962 + -0.2 62,963 - +0.0 62,963 - -1.5 62,963 - -1.1 62,990 + -0.4 62,990 + -1.5 62,990 + +0.0 62,990 + -0.7 62,990 + +0.4 62,990 + -1.1 62,990 + +0.3 62,990 + -0.1 62,990 + -0.7 62,990 + -0.1 62,990 + +1.3 62,990 + +0.0 62,990 + +1.1 62,990 + +0.5 62,990 + +0.3 62,990 + +0.6 62,990 + +0.2 62,991 - +0.6 62,991 - -0.2 62,991 - -1.0 62,991 - -0.1 62,991 - +0.2 62,991 - -0.7 62,991 - -0.6 62,991 - +0.6 62,991 - -0.1 62,991 - -2.0 62,991 - -0.6 63,266 + MPMX19_00059 0.55 -0.4 63,266 + MPMX19_00059 0.55 -1.2 63,266 + MPMX19_00059 0.55 -0.8 63,266 + MPMX19_00059 0.55 +0.9 63,266 + MPMX19_00059 0.55 +1.0 63,266 + MPMX19_00059 0.55 +1.2 63,266 + MPMX19_00059 0.55 -1.5 63,266 + MPMX19_00059 0.55 -1.5 63,266 + MPMX19_00059 0.55 -2.0 63,266 + MPMX19_00059 0.55 -0.2 63,266 + MPMX19_00059 0.55 -0.7 63,266 + MPMX19_00059 0.55 -0.1 63,266 + MPMX19_00059 0.55 +0.0 63,266 + MPMX19_00059 0.55 +0.5 63,266 + MPMX19_00059 0.55 -0.4 63,266 + MPMX19_00059 0.55 -0.8 63,266 + MPMX19_00059 0.55 +0.0 63,266 + MPMX19_00059 0.55 -1.2 63,266 + MPMX19_00059 0.55 +0.3 63,266 + MPMX19_00059 0.55 -2.0 63,266 + MPMX19_00059 0.55 -1.2 63,267 - MPMX19_00059 0.55 +0.4 63,267 - MPMX19_00059 0.55 -1.0 63,267 - MPMX19_00059 0.55 -0.4 63,267 - MPMX19_00059 0.55 -0.5 63,267 - MPMX19_00059 0.55 -0.8 63,267 - MPMX19_00059 0.55 +1.3 63,267 - MPMX19_00059 0.55 -1.1 63,267 - MPMX19_00059 0.55 +0.3 63,267 - MPMX19_00059 0.55 -0.4 63,267 - MPMX19_00059 0.55 +0.6 63,267 - MPMX19_00059 0.55 +0.4 63,267 - MPMX19_00059 0.55 -0.5 63,267 - MPMX19_00059 0.55 +0.0 63,267 - MPMX19_00059 0.55 +0.6 63,267 - MPMX19_00059 0.55 -0.7 63,267 - MPMX19_00059 0.55 -1.2 63,267 - MPMX19_00059 0.55 -0.7 63,267 - MPMX19_00059 0.55 +1.1 63,267 - MPMX19_00059 0.55 -0.4 63,287 + MPMX19_00059 0.59 +2.3 63,287 + MPMX19_00059 0.59 +1.5 63,287 + MPMX19_00059 0.59 +1.0 63,287 + MPMX19_00059 0.59 -0.2 63,288 - MPMX19_00059 0.59 -0.8 63,288 - MPMX19_00059 0.59 -0.4 63,288 - MPMX19_00059 0.59 +1.2 63,288 - MPMX19_00059 0.59 +1.3 63,288 - MPMX19_00059 0.59 -1.5 63,288 - MPMX19_00059 0.59 -0.4 63,288 - MPMX19_00059 0.59 -0.7 63,506 + -0.1 63,514 + +0.8 63,562 + -0.7 63,562 + +0.2 63,562 + -0.9 63,562 + -0.4 63,563 - +0.3 63,584 + -0.2 63,584 + +0.0 63,584 + -0.6 63,584 + -0.7 63,584 + -0.3 63,584 + -0.6 63,584 + -2.3 63,584 + -0.4 63,584 + -0.1 63,585 - -0.4 63,585 - -1.0 63,585 - +0.8 63,585 - +1.0 63,633 + MPMX19_00060 0.14 -0.6 63,633 + MPMX19_00060 0.14 -0.7 63,633 + MPMX19_00060 0.14 +0.9 63,633 + MPMX19_00060 0.14 -0.5 63,633 + MPMX19_00060 0.14 +0.1 63,633 + MPMX19_00060 0.14 +0.0 63,633 + MPMX19_00060 0.14 +0.0 63,633 + MPMX19_00060 0.14 -1.2 63,633 + MPMX19_00060 0.14 +1.3 63,634 - MPMX19_00060 0.14 -0.8 63,634 - MPMX19_00060 0.14 -0.2 63,634 - MPMX19_00060 0.14 -2.0 63,634 - MPMX19_00060 0.14 +0.0 63,634 - MPMX19_00060 0.14 -0.1 63,634 - MPMX19_00060 0.14 +0.5 63,634 - MPMX19_00060 0.14 +0.4 63,634 - MPMX19_00060 0.14 -1.4 63,634 - MPMX19_00060 0.14 -1.0 63,634 - MPMX19_00060 0.14 -0.2 63,694 + MPMX19_00060 0.31 +0.0 63,694 + MPMX19_00060 0.31 +0.0 63,695 - MPMX19_00060 0.32 +0.3 63,954 - -0.5 64,067 + MPMX19_00061 0.12 -0.2 64,067 + MPMX19_00061 0.12 -1.3 64,067 + MPMX19_00061 0.12 +0.4 64,185 - MPMX19_00061 0.23 +1.6 64,185 - MPMX19_00061 0.23 -1.7 64,185 - MPMX19_00061 0.23 -1.4 64,584 - MPMX19_00061 0.62 +0.0 64,667 + MPMX19_00061 0.70 -1.5 64,788 - MPMX19_00061 0.81 +0.5 64,811 + MPMX19_00061 0.84 +1.3 64,811 + MPMX19_00061 0.84 -0.7 64,812 - MPMX19_00061 0.84 -1.2 64,812 - MPMX19_00061 0.84 +1.9 64,812 - MPMX19_00061 0.84 -1.4 64,820 + MPMX19_00061 0.84 -2.3 64,821 - MPMX19_00061 0.85 -0.4 64,821 - MPMX19_00061 0.85 -0.1 64,952 - -0.6 64,952 - +2.6 64,952 - +1.9 65,013 + -1.3 65,013 + -1.2 65,013 + +0.3 65,013 + -0.4 65,013 + +0.8 65,013 + -0.7 65,013 + -2.0 65,013 + +1.1 65,013 + -1.8 65,013 + +0.2 65,013 + +0.5 65,013 + +0.2 65,014 - -2.4 65,014 - -0.4 65,014 - -1.0 65,014 - +1.3 65,014 - -1.7 65,014 - -1.6 65,014 - +0.1 65,014 - +0.8 65,014 - +0.8 65,014 - -0.5 65,014 - -0.7 65,014 - -0.7 65,014 - +0.8 65,014 - -0.1 65,014 - -1.1 65,014 - +1.4 65,014 - -0.2 65,014 - +0.6 65,014 - -0.6 65,014 - -1.0 65,014 - -0.7 65,014 - -0.7 65,032 - +0.7 65,032 - +0.4 65,032 - -2.5 65,032 - -1.5 65,032 - -0.5 65,032 - +0.6 65,032 - -0.7 65,032 - +0.5 65,223 + MPMX19_00062 0.24 -1.1 65,543 - MPMX19_00062 0.67 -0.4 65,680 + MPMX19_00062 0.85 -0.0 65,680 + MPMX19_00062 0.85 -0.5 65,680 + MPMX19_00062 0.85 +0.0 65,680 + MPMX19_00062 0.85 +0.8 65,680 + MPMX19_00062 0.85 -0.5 65,680 + MPMX19_00062 0.85 -0.4 65,680 + MPMX19_00062 0.85 -2.1 65,681 - MPMX19_00062 0.85 +0.1 65,681 - MPMX19_00062 0.85 -0.5 65,681 - MPMX19_00062 0.85 +0.3 65,681 - MPMX19_00062 0.85 -2.0 65,827 - -0.4 65,827 - -0.2 65,827 - -1.7 65,827 - +1.0 65,827 - +0.3 65,917 + -0.5 65,917 + -0.7 65,917 + -0.7 65,917 + +1.0 65,919 + -2.3 65,919 + +0.2 65,919 + -0.2 65,921 + -0.7 65,921 + -2.5 65,921 + +0.5 65,921 + -0.4 65,921 + +0.3 65,921 + -1.4 65,921 + -0.2 65,921 + -0.8 65,921 + -0.6 65,921 + -0.1
Or see this region's nucleotide sequence