Strain Fitness in Variovorax sp. SCN45 around GFF919

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF918 and GFF919 are separated by 129 nucleotidesGFF919 and GFF920 are separated by 20 nucleotides GFF918 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 230,291 to 231,646 GFF918 GFF919 - hypothetical protein, at 231,776 to 232,744 GFF919 GFF920 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 232,765 to 233,994 GFF920 Position (kb) 231 232 233Strain fitness (log2 ratio) -2 -1 0 1 2at 231.228 kb on + strand, within GFF918at 231.258 kb on + strand, within GFF918at 231.259 kb on - strand, within GFF918at 231.406 kb on - strand, within GFF918at 231.525 kb on + strandat 231.526 kb on - strandat 231.526 kb on - strandat 231.528 kb on + strandat 231.528 kb on + strandat 231.529 kb on - strandat 231.529 kb on - strandat 231.529 kb on - strandat 231.529 kb on - strandat 231.529 kb on - strandat 231.529 kb on - strandat 231.529 kb on - strandat 231.529 kb on - strandat 231.737 kb on + strandat 231.737 kb on + strandat 231.737 kb on + strandat 231.737 kb on + strandat 231.737 kb on + strandat 231.738 kb on - strandat 231.738 kb on - strandat 231.738 kb on - strandat 231.881 kb on + strand, within GFF919at 231.881 kb on + strand, within GFF919at 231.881 kb on + strand, within GFF919at 231.881 kb on + strand, within GFF919at 231.881 kb on + strand, within GFF919at 231.882 kb on - strand, within GFF919at 231.882 kb on - strand, within GFF919at 231.882 kb on - strand, within GFF919at 231.911 kb on + strand, within GFF919at 231.912 kb on - strand, within GFF919at 232.040 kb on + strand, within GFF919at 232.040 kb on + strand, within GFF919at 232.040 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.115 kb on + strand, within GFF919at 232.116 kb on - strand, within GFF919at 232.116 kb on - strand, within GFF919at 232.190 kb on + strand, within GFF919at 232.190 kb on + strand, within GFF919at 232.190 kb on + strand, within GFF919at 232.190 kb on + strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.191 kb on - strand, within GFF919at 232.265 kb on + strand, within GFF919at 232.265 kb on + strand, within GFF919at 232.265 kb on + strand, within GFF919at 232.266 kb on - strand, within GFF919at 232.266 kb on - strand, within GFF919at 232.322 kb on + strand, within GFF919at 232.323 kb on - strand, within GFF919at 232.323 kb on - strand, within GFF919at 232.323 kb on - strand, within GFF919at 232.443 kb on - strand, within GFF919at 233.089 kb on + strand, within GFF920at 233.090 kb on - strand, within GFF920at 233.090 kb on - strand, within GFF920at 233.099 kb on - strand, within GFF920at 233.224 kb on + strand, within GFF920at 233.224 kb on + strand, within GFF920at 233.224 kb on + strand, within GFF920at 233.303 kb on - strand, within GFF920at 233.383 kb on + strand, within GFF920at 233.384 kb on - strand, within GFF920at 233.384 kb on - strand, within GFF920at 233.458 kb on + strand, within GFF920at 233.472 kb on + strand, within GFF920

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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231,228 + GFF918 0.69 -1.4
231,258 + GFF918 0.71 -1.0
231,259 - GFF918 0.71 +0.1
231,406 - GFF918 0.82 -0.2
231,525 + +1.1
231,526 - +0.0
231,526 - -0.6
231,528 + -0.3
231,528 + +0.1
231,529 - -1.7
231,529 - -0.2
231,529 - -0.8
231,529 - +0.4
231,529 - -1.8
231,529 - +1.5
231,529 - -0.7
231,529 - -2.0
231,737 + +0.2
231,737 + -0.4
231,737 + +0.1
231,737 + -0.4
231,737 + +0.1
231,738 - +1.1
231,738 - -0.2
231,738 - +0.1
231,881 + GFF919 0.11 -0.4
231,881 + GFF919 0.11 -0.4
231,881 + GFF919 0.11 -0.5
231,881 + GFF919 0.11 +0.2
231,881 + GFF919 0.11 +2.1
231,882 - GFF919 0.11 -1.0
231,882 - GFF919 0.11 +1.2
231,882 - GFF919 0.11 -0.6
231,911 + GFF919 0.14 +0.3
231,912 - GFF919 0.14 -0.4
232,040 + GFF919 0.27 +1.6
232,040 + GFF919 0.27 -0.6
232,040 + GFF919 0.27 +0.1
232,115 + GFF919 0.35 -0.6
232,115 + GFF919 0.35 +1.2
232,115 + GFF919 0.35 +1.0
232,115 + GFF919 0.35 -1.2
232,115 + GFF919 0.35 -0.6
232,115 + GFF919 0.35 -0.4
232,115 + GFF919 0.35 -0.0
232,115 + GFF919 0.35 -0.5
232,116 - GFF919 0.35 -1.1
232,116 - GFF919 0.35 +1.4
232,190 + GFF919 0.43 -0.1
232,190 + GFF919 0.43 +0.7
232,190 + GFF919 0.43 -0.6
232,190 + GFF919 0.43 +0.4
232,191 - GFF919 0.43 -1.0
232,191 - GFF919 0.43 -0.6
232,191 - GFF919 0.43 +1.6
232,191 - GFF919 0.43 -0.3
232,191 - GFF919 0.43 +0.2
232,191 - GFF919 0.43 +0.6
232,191 - GFF919 0.43 +0.8
232,191 - GFF919 0.43 -2.5
232,265 + GFF919 0.50 -1.1
232,265 + GFF919 0.50 +1.1
232,265 + GFF919 0.50 -2.0
232,266 - GFF919 0.51 +1.4
232,266 - GFF919 0.51 +1.0
232,322 + GFF919 0.56 -0.5
232,323 - GFF919 0.56 -0.3
232,323 - GFF919 0.56 +0.1
232,323 - GFF919 0.56 -0.2
232,443 - GFF919 0.69 -0.2
233,089 + GFF920 0.26 -0.2
233,090 - GFF920 0.26 -0.4
233,090 - GFF920 0.26 -0.4
233,099 - GFF920 0.27 -0.4
233,224 + GFF920 0.37 +0.2
233,224 + GFF920 0.37 -0.6
233,224 + GFF920 0.37 +1.1
233,303 - GFF920 0.44 +0.0
233,383 + GFF920 0.50 -0.2
233,384 - GFF920 0.50 -0.4
233,384 - GFF920 0.50 +0.1
233,458 + GFF920 0.56 -2.4
233,472 + GFF920 0.57 -0.8

Or see this region's nucleotide sequence