Strain Fitness in Variovorax sp. SCN45 around GFF808

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
111,466	-		GFF807	0.48	-0.4
111,466	-		GFF807	0.48	+1.0
111,949	+				-0.4
111,949	+				+0.0
111,949	+				-0.3
111,950	-				-0.4
111,950	-				-0.0
111,950	-				-0.2
111,960	+				-0.8
111,960	+				-0.1
111,960	+				-0.0
111,961	-				-1.3
111,961	-				+0.8
111,961	-				+0.4
111,990	+				-0.6
112,071	+				-0.4
112,072	-				-0.0
112,072	-				-0.4
112,072	-				-0.5
112,072	-				-1.0
112,072	-				-0.3
112,072	-				+0.5
112,072	-				-0.6
112,072	-				+0.2
112,099	+				-0.4
112,099	+				-0.2
112,099	+				-0.2
112,100	-				+0.4
112,100	-				-0.9
112,100	-				+0.3
112,164	-				-0.8
112,164	-				+0.2
112,164	-				+0.9
112,448	+		GFF808	0.13	-0.8
112,448	+		GFF808	0.13	-0.2
112,448	+		GFF808	0.13	-0.6
112,448	+		GFF808	0.13	-2.1
112,448	+		GFF808	0.13	-1.3
112,448	+		GFF808	0.13	-0.7
112,448	+		GFF808	0.13	-1.5
112,448	+		GFF808	0.13	-0.9
112,448	+		GFF808	0.13	-0.2
112,448	+		GFF808	0.13	-0.5
112,448	+		GFF808	0.13	-0.5
112,449	-		GFF808	0.13	-1.9
112,449	-		GFF808	0.13	-0.4
112,449	-		GFF808	0.13	-0.6
112,449	-		GFF808	0.13	-0.6
112,449	-		GFF808	0.13	-0.7
112,449	-		GFF808	0.13	-0.6
112,568	+		GFF808	0.20	-1.6
112,568	+		GFF808	0.20	-0.8
112,568	+		GFF808	0.20	-1.2
112,569	-		GFF808	0.20	+2.4
112,569	-		GFF808	0.20	-1.5
112,874	+		GFF808	0.37	-1.9
112,874	+		GFF808	0.37	-0.4
112,875	-		GFF808	0.37	-1.4
112,875	-		GFF808	0.37	-0.2
112,875	-		GFF808	0.37	-0.8
112,875	-		GFF808	0.37	-1.1
112,892	+		GFF808	0.38	+0.8
112,893	-		GFF808	0.38	+1.0
112,893	-		GFF808	0.38	+0.4
112,893	-		GFF808	0.38	-0.4
112,961	+		GFF808	0.42	-1.9
112,961	+		GFF808	0.42	-0.8
112,961	+		GFF808	0.42	-0.6
112,961	+		GFF808	0.42	-1.4
112,961	+		GFF808	0.42	-1.7
112,962	-		GFF808	0.42	-0.3
112,962	-		GFF808	0.42	-1.1
112,962	-		GFF808	0.42	-2.9
112,962	-		GFF808	0.42	-2.0
112,962	-		GFF808	0.42	-0.9
112,962	-		GFF808	0.42	-1.4
112,962	-		GFF808	0.42	-1.7
112,962	-		GFF808	0.42	-1.4
112,962	-		GFF808	0.42	-1.6
112,962	-		GFF808	0.42	-0.6
113,000	+		GFF808	0.45	-0.6
113,084	+		GFF808	0.49	-1.2
113,084	+		GFF808	0.49	-2.1
113,084	+		GFF808	0.49	+0.6
113,084	+		GFF808	0.49	-0.9
113,084	+		GFF808	0.49	-0.1
113,084	+		GFF808	0.49	+0.3
113,084	+		GFF808	0.49	+0.3
113,084	+		GFF808	0.49	-1.6
113,084	+		GFF808	0.49	-1.4
113,085	-		GFF808	0.49	+1.4
113,085	-		GFF808	0.49	-0.8
113,085	-		GFF808	0.49	-0.9
113,085	-		GFF808	0.49	-1.3
113,085	-		GFF808	0.49	+0.0
113,085	-		GFF808	0.49	+0.1
113,261	+		GFF808	0.59	-1.4
113,315	+		GFF808	0.62	-0.3
113,316	-		GFF808	0.63	-0.2
113,411	+		GFF808	0.68	-0.4
113,411	+		GFF808	0.68	-0.2
113,411	+		GFF808	0.68	+0.4
113,411	+		GFF808	0.68	-0.2
113,412	-		GFF808	0.68	-0.3
113,412	-		GFF808	0.68	-2.2
113,412	-		GFF808	0.68	-1.9
113,412	-		GFF808	0.68	-1.5
113,412	-		GFF808	0.68	-0.9
113,412	-		GFF808	0.68	-1.8
113,412	-		GFF808	0.68	-1.0
113,412	-		GFF808	0.68	-0.4
113,412	-		GFF808	0.68	-0.5
113,412	-		GFF808	0.68	-0.6
113,412	-		GFF808	0.68	-0.3
113,412	-		GFF808	0.68	-2.1
113,426	+		GFF808	0.69	-1.0
113,426	+		GFF808	0.69	-1.2
113,426	+		GFF808	0.69	-0.6
113,426	+		GFF808	0.69	-0.8
113,426	+		GFF808	0.69	-2.9
113,426	+		GFF808	0.69	+0.1
113,426	+		GFF808	0.69	-0.5
113,426	+		GFF808	0.69	-0.4
113,427	-		GFF808	0.69	-0.2
113,427	-		GFF808	0.69	-0.0
113,427	-		GFF808	0.69	-0.6
113,427	-		GFF808	0.69	-0.9
113,504	+		GFF808	0.73	-2.2
113,504	+		GFF808	0.73	-2.2
113,504	+		GFF808	0.73	+3.0
113,504	+		GFF808	0.73	-0.9
113,504	+		GFF808	0.73	-0.2
113,504	+		GFF808	0.73	-0.4
113,504	+		GFF808	0.73	-0.7
113,504	+		GFF808	0.73	-1.1
113,505	-		GFF808	0.73	-0.5
113,505	-		GFF808	0.73	-0.5
113,505	-		GFF808	0.73	-1.2
113,505	-		GFF808	0.73	-0.8
113,505	-		GFF808	0.73	-0.7
113,505	-		GFF808	0.73	-0.8
113,513	+		GFF808	0.74	-1.1
113,514	-		GFF808	0.74	-1.8
113,514	-		GFF808	0.74	-0.6
113,514	-		GFF808	0.74	-1.2
113,514	-		GFF808	0.74	-1.6
113,528	+		GFF808	0.75	-0.8
113,528	+		GFF808	0.75	-0.9
113,528	+		GFF808	0.75	-0.2
113,529	-		GFF808	0.75	-1.7
113,529	-		GFF808	0.75	+0.8
113,529	-		GFF808	0.75	-1.2
113,612	+		GFF808	0.79	-0.5
113,612	+		GFF808	0.79	+0.4
113,612	+		GFF808	0.79	-1.1
113,612	+		GFF808	0.79	+1.4
113,612	+		GFF808	0.79	+0.2
113,612	+		GFF808	0.79	-1.2
113,612	+		GFF808	0.79	+0.5
113,613	-		GFF808	0.79	-1.4
113,613	-		GFF808	0.79	-0.2
113,613	-		GFF808	0.79	+0.4
113,613	-		GFF808	0.79	-1.2
113,613	-		GFF808	0.79	+0.4
113,613	-		GFF808	0.79	-0.7
113,613	-		GFF808	0.79	-1.5
113,618	+		GFF808	0.80	-0.2
113,618	+		GFF808	0.80	-2.2
113,618	+		GFF808	0.80	-1.3
113,618	+		GFF808	0.80	-0.6
113,618	+		GFF808	0.80	-0.2
113,619	-		GFF808	0.80	-0.5
113,619	-		GFF808	0.80	-0.5
113,619	-		GFF808	0.80	-0.9
113,619	-		GFF808	0.80	-1.4
113,619	-		GFF808	0.80	-0.3
113,619	-		GFF808	0.80	-1.5
113,619	-		GFF808	0.80	-0.3
113,619	-		GFF808	0.80	+0.1
113,619	-		GFF808	0.80	-1.2
113,660	+		GFF808	0.82	-2.6
113,660	+		GFF808	0.82	-0.4
113,661	-		GFF808	0.82	+0.7
113,661	-		GFF808	0.82	+1.4
113,661	-		GFF808	0.82	-1.2
113,907	-				-1.2
113,924	+				-2.7
113,924	+				-0.6
113,924	+				-1.4
113,924	+				+0.2
113,924	+				-1.1
113,924	+				-1.6
113,924	+				-1.3
113,924	+				+0.2
113,924	+				+0.1
113,924	+				-0.2
113,925	-				-1.3
113,925	-				+1.2
113,925	-				-1.5
113,925	-				-2.0
113,925	-				-0.2
113,925	-				-0.3
113,925	-				-1.0
113,925	-				-1.7
113,954	+				+0.2
113,955	-				-0.8
113,955	-				-1.6
114,483	+		GFF809	0.38	+0.2
114,483	+		GFF809	0.38	+0.0
114,483	+		GFF809	0.38	+0.2
114,483	+		GFF809	0.38	-0.4
114,483	+		GFF809	0.38	-0.6
114,484	-		GFF809	0.39	-0.4
114,484	-		GFF809	0.39	-0.0
114,484	-		GFF809	0.39	+0.2
114,484	-		GFF809	0.39	+0.6
114,484	-		GFF809	0.39	+0.2
114,484	-		GFF809	0.39	+0.3
114,492	+		GFF809	0.39	-1.5
114,492	+		GFF809	0.39	+1.2
114,493	-		GFF809	0.39	-1.5
114,493	-		GFF809	0.39	-0.1
114,493	-		GFF809	0.39	-0.3
114,493	-		GFF809	0.39	-0.1
114,493	-		GFF809	0.39	+0.1
114,864	+		GFF809	0.71	+1.1
114,864	+		GFF809	0.71	-1.3
114,864	+		GFF809	0.71	-1.3
114,865	-		GFF809	0.71	-0.8
114,865	-		GFF809	0.71	-0.3
114,865	-		GFF809	0.71	-0.7
114,865	-		GFF809	0.71	-0.3
114,865	-		GFF809	0.71	-0.4