Strain Fitness in Variovorax sp. SCN45 around GFF800

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
104,006	+		GFF798	0.76	+0.8
104,007	-		GFF798	0.76	+0.1
104,007	-		GFF798	0.76	+0.4
104,007	-		GFF798	0.76	-1.2
104,007	-		GFF798	0.76	-0.9
104,007	-		GFF798	0.76	-0.7
104,054	+		GFF798	0.79	-0.1
104,054	+		GFF798	0.79	-1.8
104,054	+		GFF798	0.79	-0.2
104,054	+		GFF798	0.79	+0.2
104,054	+		GFF798	0.79	+1.1
104,054	+		GFF798	0.79	-0.6
104,054	+		GFF798	0.79	-1.0
104,054	+		GFF798	0.79	+0.2
104,054	+		GFF798	0.79	+0.0
104,054	+		GFF798	0.79	-1.7
104,054	+		GFF798	0.79	+0.1
104,054	+		GFF798	0.79	-0.7
104,054	+		GFF798	0.79	-0.3
104,055	-		GFF798	0.79	-1.4
104,055	-		GFF798	0.79	-0.3
104,055	-		GFF798	0.79	+1.1
104,055	-		GFF798	0.79	-0.2
104,055	-		GFF798	0.79	-0.8
104,055	-		GFF798	0.79	-0.1
104,055	-		GFF798	0.79	-0.8
104,175	-		GFF798	0.86	-0.4
104,244	-				-0.9
104,399	+				-0.9
104,399	+				+1.5
104,785	-		GFF799	0.80	+1.2
104,868	+				+0.1
104,868	+				-0.2
104,868	+				-0.4
104,869	-				-0.3
104,869	-				-0.0
104,869	-				+0.0
104,949	+				-0.4
104,950	-				-0.6
104,970	+				-0.6
104,983	+				-0.9
104,983	+				-0.9
104,983	+				-0.9
104,984	-				-0.2
104,984	-				-1.1
104,984	-				-0.1
104,984	-				+0.1
104,984	-				-0.2
105,183	+				+0.4
105,183	+				+0.1
105,183	+				-1.1
105,183	+				-1.2
105,183	+				-0.1
105,183	+				-1.0
105,183	+				-0.2
105,183	+				-0.6
105,183	+				-0.2
105,183	+				-0.7
105,183	+				-0.5
105,183	+				-0.7
105,184	-				+0.4
105,184	-				+0.1
105,184	-				-0.6
105,184	-				+0.6
105,184	-				-0.2
105,184	-				-0.5
105,184	-				-0.1
105,184	-				-0.5
105,184	-				-0.3
105,184	-				-0.5
105,184	-				+0.4
105,291	+		GFF800	0.16	-0.9
105,291	+		GFF800	0.16	-1.2
105,291	+		GFF800	0.16	-1.6
105,291	+		GFF800	0.16	-0.1
105,291	+		GFF800	0.16	-0.6
105,291	+		GFF800	0.16	-1.1
105,291	+		GFF800	0.16	+0.2
105,292	-		GFF800	0.16	-1.1
105,472	-		GFF800	0.25	-0.8
105,918	+		GFF800	0.48	-0.5
105,918	+		GFF800	0.48	-0.4
105,918	+		GFF800	0.48	+0.8
105,918	+		GFF800	0.48	-1.1
105,919	-		GFF800	0.48	-0.8
105,919	-		GFF800	0.48	+0.6
106,029	+		GFF800	0.54	+0.3
106,029	+		GFF800	0.54	-1.3
106,029	+		GFF800	0.54	-0.4
106,029	+		GFF800	0.54	+0.2
106,029	+		GFF800	0.54	+0.3
106,029	+		GFF800	0.54	-1.2
106,029	+		GFF800	0.54	-0.2
106,029	+		GFF800	0.54	-0.6
106,029	+		GFF800	0.54	-0.3
106,030	-		GFF800	0.54	+0.4
106,030	-		GFF800	0.54	-0.1
106,030	-		GFF800	0.54	+0.2
106,030	-		GFF800	0.54	-1.4
106,030	-		GFF800	0.54	-0.2
106,030	-		GFF800	0.54	+0.0
106,030	-		GFF800	0.54	-0.1
106,065	+		GFF800	0.56	+0.8
106,066	-		GFF800	0.56	-0.2
106,066	-		GFF800	0.56	-1.1
106,066	-		GFF800	0.56	-0.4
106,184	+		GFF800	0.62	+0.7
106,185	-		GFF800	0.62	+0.2
106,186	+		GFF800	0.62	-0.1
106,255	+		GFF800	0.66	-0.7
106,255	+		GFF800	0.66	-0.3
106,255	+		GFF800	0.66	-1.2
106,255	+		GFF800	0.66	-1.2
106,256	-		GFF800	0.66	-0.6
106,256	-		GFF800	0.66	-0.7
106,395	+		GFF800	0.73	-0.3
106,395	+		GFF800	0.73	-1.8
106,395	+		GFF800	0.73	-0.6
106,395	+		GFF800	0.73	-0.9
106,395	+		GFF800	0.73	+0.8
106,395	+		GFF800	0.73	-1.4
106,395	+		GFF800	0.73	+0.8
106,395	+		GFF800	0.73	+1.0
106,395	+		GFF800	0.73	-0.4
106,395	+		GFF800	0.73	-0.4
106,395	+		GFF800	0.73	-0.5
106,395	+		GFF800	0.73	+0.1
106,395	+		GFF800	0.73	-1.0
106,395	+		GFF800	0.73	-0.1
106,396	-		GFF800	0.73	+0.3
106,396	-		GFF800	0.73	-0.0
106,396	-		GFF800	0.73	-0.4
106,396	-		GFF800	0.73	-0.9
106,396	-		GFF800	0.73	-0.8
106,396	-		GFF800	0.73	-0.9
106,396	-		GFF800	0.73	-1.1
106,396	-		GFF800	0.73	+0.0
106,396	-		GFF800	0.73	-0.6
106,396	-		GFF800	0.73	-0.7
106,396	-		GFF800	0.73	-1.4
106,398	+		GFF800	0.73	-0.6
106,398	+		GFF800	0.73	+0.6
106,398	+		GFF800	0.73	+0.0
106,398	+		GFF800	0.73	+0.7
106,398	+		GFF800	0.73	+0.1
106,398	+		GFF800	0.73	+2.4
106,398	+		GFF800	0.73	-0.2
106,398	+		GFF800	0.73	+0.5
106,398	+		GFF800	0.73	+0.5
106,398	+		GFF800	0.73	-0.3
106,398	+		GFF800	0.73	+1.1
106,398	+		GFF800	0.73	-1.3
106,399	-		GFF800	0.74	-0.3
106,399	-		GFF800	0.74	+0.6
106,399	-		GFF800	0.74	-0.6
106,399	-		GFF800	0.74	+0.0
106,399	-		GFF800	0.74	+1.2
106,399	-		GFF800	0.74	-0.7
106,399	-		GFF800	0.74	+0.2
106,399	-		GFF800	0.74	+0.7
106,399	-		GFF800	0.74	-0.7
106,399	-		GFF800	0.74	+1.1
106,401	+		GFF800	0.74	+0.1
106,401	+		GFF800	0.74	-0.2
106,401	+		GFF800	0.74	-0.8
106,401	+		GFF800	0.74	+0.7
106,401	+		GFF800	0.74	-0.6
106,401	+		GFF800	0.74	+0.9
106,401	+		GFF800	0.74	+0.6
106,401	+		GFF800	0.74	-1.4
106,401	+		GFF800	0.74	-0.1
106,401	+		GFF800	0.74	-1.2
106,401	+		GFF800	0.74	+0.4
106,401	+		GFF800	0.74	-0.5
106,402	-		GFF800	0.74	-0.4
106,402	-		GFF800	0.74	-0.6
106,402	-		GFF800	0.74	-0.2
106,402	-		GFF800	0.74	+0.4
106,402	-		GFF800	0.74	+1.0
106,402	-		GFF800	0.74	+0.3
106,402	-		GFF800	0.74	-2.3
106,402	-		GFF800	0.74	+0.0
106,402	-		GFF800	0.74	-2.3
106,402	-		GFF800	0.74	+0.1
106,402	-		GFF800	0.74	+0.7
106,482	+		GFF800	0.78	-1.2
106,482	+		GFF800	0.78	-0.5
106,482	+		GFF800	0.78	+0.1
106,482	+		GFF800	0.78	+0.1
106,483	-		GFF800	0.78	+0.9
106,483	-		GFF800	0.78	-1.4
106,483	-		GFF800	0.78	+0.2
106,483	-		GFF800	0.78	-1.4
106,483	-		GFF800	0.78	-0.1
106,548	+		GFF800	0.81	+0.2
106,548	+		GFF800	0.81	-0.6
106,549	-		GFF800	0.81	-2.6
106,549	-		GFF800	0.81	-1.2
106,549	-		GFF800	0.81	+0.1
106,641	+		GFF800	0.86	-0.5
106,641	-		GFF800	0.86	-0.3
106,642	-		GFF800	0.86	+0.2
106,642	-		GFF800	0.86	-1.2
106,642	-		GFF800	0.86	+0.1
106,642	-		GFF800	0.86	-1.3
106,642	-		GFF800	0.86	-0.2
106,795	-				+0.2
106,795	-				+0.6
106,824	+				-1.1
106,825	-				+0.6
106,848	+				-0.7
106,848	+				+1.0
106,848	+				+1.7
106,849	-				+1.2
106,849	-				+0.2
106,849	-				-1.0
106,849	-				+0.0
106,849	-				+0.6
106,849	-				+0.3
106,849	-				-0.5
106,849	-				-0.5
106,849	-				-1.6
106,849	-				-0.5
106,989	+				-0.6
106,990	-				-1.4
106,990	-				-2.2
107,016	+				-1.2
107,016	+				-0.5
107,016	+				+0.2
107,016	+				-0.0
107,017	-				-0.3
107,017	-				-0.5
107,164	-		GFF801	0.34	-0.3
107,164	-		GFF801	0.34	-0.2
107,211	+		GFF801	0.43	+1.4
107,212	-		GFF801	0.43	+0.1
107,212	-		GFF801	0.43	-3.0
107,235	+		GFF801	0.48	+0.2
107,235	+		GFF801	0.48	-0.7
107,235	+		GFF801	0.48	-0.1
107,235	+		GFF801	0.48	-0.4
107,235	+		GFF801	0.48	+0.2
107,235	+		GFF801	0.48	-0.3
107,235	+		GFF801	0.48	-1.0
107,235	+		GFF801	0.48	-1.8
107,235	+		GFF801	0.48	-0.3
107,235	+		GFF801	0.48	+0.7
107,235	+		GFF801	0.48	-0.3
107,235	+		GFF801	0.48	-0.1
107,236	-		GFF801	0.48	-1.0
107,236	-		GFF801	0.48	-1.4
107,236	-		GFF801	0.48	-0.5
107,236	-		GFF801	0.48	+1.4
107,236	-		GFF801	0.48	-0.7
107,236	-		GFF801	0.48	-0.1
107,236	-		GFF801	0.48	-0.0
107,236	-		GFF801	0.48	+0.1
107,236	-		GFF801	0.48	-0.5
107,590	+				-0.3
107,590	+				-1.2
107,590	+				+0.3
107,591	-				+0.1
107,591	-				-0.6
107,591	-				+0.9
107,630	+				-1.5
107,630	+				+0.5
107,631	-				-1.5
107,631	-				-0.2
107,631	-				-0.9
107,631	-				-1.3
107,714	+		GFF802	0.17	+0.5
107,714	+		GFF802	0.17	-0.3
107,714	+		GFF802	0.17	-0.1
107,715	-		GFF802	0.18	-0.0
107,715	-		GFF802	0.18	-0.0
107,715	-		GFF802	0.18	+0.1
107,723	+		GFF802	0.19	+0.1
107,723	+		GFF802	0.19	+0.2
107,723	+		GFF802	0.19	-0.8
107,723	+		GFF802	0.19	-1.1
107,723	+		GFF802	0.19	-0.9
107,723	+		GFF802	0.19	-0.1
107,724	-		GFF802	0.19	-0.7
107,724	-		GFF802	0.19	-0.3
107,724	-		GFF802	0.19	-2.4
107,724	-		GFF802	0.19	-0.4
107,801	+		GFF802	0.35	+1.8
107,801	+		GFF802	0.35	-0.3
107,801	+		GFF802	0.35	-0.4
107,801	+		GFF802	0.35	-0.9
107,801	+		GFF802	0.35	+0.1
107,802	-		GFF802	0.35	-0.7
107,802	-		GFF802	0.35	-0.7