Strain Fitness in Variovorax sp. SCN45 around GFF747

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
9,454	-				+0.4
9,630	+		GFF746	0.22	+0.1
9,834	+		GFF746	0.43	+0.4
9,835	-		GFF746	0.43	-0.8
9,835	-		GFF746	0.43	-0.9
10,060	-		GFF746	0.66	-1.1
10,122	+		GFF746	0.72	-0.2
10,122	+		GFF746	0.72	-0.8
10,123	-		GFF746	0.72	-0.7
10,123	-		GFF746	0.72	-0.2
10,123	-		GFF746	0.72	-1.1
10,123	-		GFF746	0.72	-1.3
10,386	+				-1.0
10,497	-				-0.3
10,562	+		GFF747	0.10	-0.7
10,562	+		GFF747	0.10	-0.6
10,562	+		GFF747	0.10	-0.8
10,562	+		GFF747	0.10	+1.5
10,562	+		GFF747	0.10	-0.7
10,563	-		GFF747	0.10	-0.2
10,563	-		GFF747	0.10	-1.6
10,563	-		GFF747	0.10	-0.4
10,585	+		GFF747	0.12	-1.4
10,586	-		GFF747	0.12	-0.5
10,629	-		GFF747	0.15	-1.3
10,629	-		GFF747	0.15	+0.6
10,778	+		GFF747	0.27	-0.5
10,812	-		GFF747	0.29	+1.2
10,910	+		GFF747	0.37	+0.1
10,910	+		GFF747	0.37	-1.4
10,911	-		GFF747	0.37	+1.1
10,911	-		GFF747	0.37	+0.1
10,911	-		GFF747	0.37	-0.4
10,911	-		GFF747	0.37	-2.1
10,946	+		GFF747	0.40	+0.1
10,946	+		GFF747	0.40	+0.8
10,946	+		GFF747	0.40	-0.4
10,946	+		GFF747	0.40	-0.9
10,946	+		GFF747	0.40	-1.8
10,946	+		GFF747	0.40	-0.6
10,949	+		GFF747	0.40	+0.2
10,949	+		GFF747	0.40	-0.6
10,949	+		GFF747	0.40	-0.1
10,949	+		GFF747	0.40	-0.1
10,949	+		GFF747	0.40	-0.4
10,949	+		GFF747	0.40	-0.5
10,949	+		GFF747	0.40	-1.3
10,949	+		GFF747	0.40	-1.0
10,949	+		GFF747	0.40	+1.4
10,950	-		GFF747	0.40	+0.7
10,950	-		GFF747	0.40	-1.2
10,950	-		GFF747	0.40	-0.2
10,950	-		GFF747	0.40	+0.9
10,950	-		GFF747	0.40	-0.9
10,950	-		GFF747	0.40	-0.2
10,950	-		GFF747	0.40	-0.4
10,950	-		GFF747	0.40	-0.6
10,950	-		GFF747	0.40	+0.4
11,204	+		GFF747	0.59	-0.1
11,244	-		GFF747	0.62	-0.5
11,531	+		GFF747	0.84	-1.0
11,531	+		GFF747	0.84	-0.6
11,532	-		GFF747	0.85	+0.1
11,532	-		GFF747	0.85	+1.4
11,567	+		GFF747	0.87	-0.2
11,567	+		GFF747	0.87	+0.1
11,568	-		GFF747	0.87	-0.0
11,568	-		GFF747	0.87	-1.2
11,759	+				-1.3
11,760	-				+0.8
11,760	-				-0.5
11,798	+				-0.6
11,798	+				-1.0
11,798	+				-1.2
11,798	+				+1.1
11,798	+				-0.4
11,798	+				-1.8
11,798	+				+0.7
11,798	+				-0.2
11,799	-				-0.2
11,799	-				-2.5
11,799	-				-2.4
11,799	-				-1.1
11,799	-				-0.2
11,799	-				-0.8
11,799	-				-0.9
11,799	-				-0.4
12,515	-				-0.1
12,515	-				-1.9
12,515	-				-0.6
12,562	+		GFF749	0.11	+0.3
12,563	-		GFF749	0.11	+0.6
12,563	-		GFF749	0.11	-1.0
12,580	+		GFF749	0.13	-0.9
12,694	+		GFF749	0.24	-0.8
12,695	-		GFF749	0.24	-1.6
12,695	-		GFF749	0.24	-1.2
12,695	-		GFF749	0.24	-0.3