Strain Fitness in Variovorax sp. SCN45 around GFF7380

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
9,316	-		GFF7379	0.32	+0.9
9,316	-		GFF7379	0.32	-0.8
9,316	-		GFF7379	0.32	-0.8
9,316	-		GFF7379	0.32	+1.9
9,316	-		GFF7379	0.32	+0.4
9,316	-		GFF7379	0.32	-0.6
9,316	-		GFF7379	0.32	-0.9
9,316	-		GFF7379	0.32	-0.5
9,390	+		GFF7379	0.38	-0.8
9,390	+		GFF7379	0.38	+0.0
9,390	+		GFF7379	0.38	+0.7
9,390	+		GFF7379	0.38	+0.4
9,390	+		GFF7379	0.38	-1.5
9,390	+		GFF7379	0.38	+0.2
9,390	+		GFF7379	0.38	+0.2
9,391	-		GFF7379	0.38	-0.6
9,391	-		GFF7379	0.38	-0.5
9,391	-		GFF7379	0.38	-0.8
9,391	-		GFF7379	0.38	-1.3
9,391	-		GFF7379	0.38	-0.0
9,391	-		GFF7379	0.38	-0.3
9,391	-		GFF7379	0.38	+0.2
9,391	-		GFF7379	0.38	-0.9
9,528	+		GFF7379	0.50	-0.4
9,529	-		GFF7379	0.50	-0.7
9,529	-		GFF7379	0.50	+0.5
9,529	-		GFF7379	0.50	-0.0
9,735	+		GFF7379	0.68	+0.5
9,736	-		GFF7379	0.68	-0.2
9,736	-		GFF7379	0.68	-1.8
9,736	-		GFF7379	0.68	-0.4
9,891	+		GFF7379	0.81	-0.0
9,891	+		GFF7379	0.81	+0.4
9,891	+		GFF7379	0.81	-0.8
9,891	+		GFF7379	0.81	-1.6
9,891	+		GFF7379	0.81	-0.4
9,891	+		GFF7379	0.81	+1.1
9,891	+		GFF7379	0.81	+0.7
9,891	+		GFF7379	0.81	+0.3
9,891	+		GFF7379	0.81	-0.8
9,891	+		GFF7379	0.81	-0.5
9,892	-		GFF7379	0.81	-0.2
9,892	-		GFF7379	0.81	+0.7
9,892	-		GFF7379	0.81	+0.5
9,892	-		GFF7379	0.81	+0.2
9,892	-		GFF7379	0.81	-0.2
9,892	-		GFF7379	0.81	-0.0
9,892	-		GFF7379	0.81	+0.1
9,892	-		GFF7379	0.81	+1.3
9,892	-		GFF7379	0.81	+0.8
9,892	-		GFF7379	0.81	-1.5
9,892	-		GFF7379	0.81	-0.5
9,892	-		GFF7379	0.81	+1.5
9,892	-		GFF7379	0.81	-2.4
9,975	+		GFF7379	0.89	+0.5
9,976	-		GFF7379	0.89	-1.1
9,976	-		GFF7379	0.89	+0.8
9,976	-		GFF7379	0.89	-0.4
10,149	+				-0.3
10,149	+				-0.0
10,149	+				-0.2
10,149	+				-0.2
10,149	+				-0.2
10,149	+				-1.0
10,149	+				-0.9
10,149	+				-1.6
10,149	+				+0.2
10,149	+				+0.2
10,149	+				-0.3
10,149	+				-1.3
10,149	+				+1.1
10,149	+				+1.0
10,149	+				+0.9
10,150	-				+0.4
10,150	-				-0.1
10,150	-				-0.8
10,150	-				-0.4
10,150	-				-0.3
10,150	-				-0.8
10,150	-				-0.9
10,150	-				+0.1
10,150	-				-0.3
10,150	-				-0.2
10,150	-				-0.5
10,150	-				+1.2
10,150	-				+0.4
10,150	-				-0.4
10,150	-				-0.4
10,150	-				-1.8
10,150	-				-1.9
10,150	-				-0.7
10,150	-				-0.6
10,150	-				+0.6
10,364	+		GFF7380	0.20	-2.6
10,364	+		GFF7380	0.20	-1.4
10,364	+		GFF7380	0.20	-1.2
10,364	+		GFF7380	0.20	-1.9
10,364	+		GFF7380	0.20	-0.6
10,365	-		GFF7380	0.21	-1.2
10,365	-		GFF7380	0.21	-2.6
10,403	+		GFF7380	0.24	-1.0
10,403	+		GFF7380	0.24	-2.3
10,403	+		GFF7380	0.24	+0.4
10,403	+		GFF7380	0.24	-0.7
10,403	+		GFF7380	0.24	-2.8
10,403	+		GFF7380	0.24	-2.6
10,403	+		GFF7380	0.24	-3.0
10,404	-		GFF7380	0.24	-1.0
10,404	-		GFF7380	0.24	-0.8
10,431	-		GFF7380	0.26	-0.0
10,431	-		GFF7380	0.26	-0.8
10,431	-		GFF7380	0.26	-1.3
10,431	-		GFF7380	0.26	-2.0
10,431	-		GFF7380	0.26	-2.0
10,442	+		GFF7380	0.27	-1.5
10,442	+		GFF7380	0.27	-1.2
10,442	+		GFF7380	0.27	-1.8
10,442	+		GFF7380	0.27	-1.6
10,442	+		GFF7380	0.27	-1.5
10,443	-		GFF7380	0.28	-2.9
10,443	-		GFF7380	0.28	-1.6
10,590	-		GFF7380	0.41	-1.7
10,865	+		GFF7380	0.65	-1.4
10,866	-		GFF7380	0.65	-1.8
10,866	-		GFF7380	0.65	+1.2
11,028	+		GFF7380	0.80	-0.5
11,028	+		GFF7380	0.80	-3.0
11,029	-		GFF7380	0.80	-0.0
11,029	-		GFF7380	0.80	-1.1
11,029	-		GFF7380	0.80	-0.8
11,029	-		GFF7380	0.80	-0.7
11,066	+		GFF7380	0.83	-2.7
11,067	-		GFF7380	0.83	-2.0
11,067	-		GFF7380	0.83	-3.1
11,067	-		GFF7380	0.83	-0.5
11,067	-		GFF7380	0.83	-2.9
11,067	-		GFF7380	0.83	-1.8
11,067	-		GFF7380	0.83	-0.9
11,269	+				-0.7
11,269	+				-0.2
11,269	+				-0.0
11,269	+				+1.0
11,269	+				+0.5
11,269	+				-0.5
11,269	+				-1.6
11,269	+				-1.8
11,269	+				+2.0
11,269	+				-0.2
11,269	+				-0.4
11,269	+				+0.4
11,269	+				-0.3
11,269	+				-1.0
11,269	+				-0.0
11,270	-				-1.5
11,270	-				-1.3
11,270	-				-0.1
11,270	-				-0.6
11,270	-				-0.6
11,270	-				+0.5
11,270	-				-0.3
11,270	-				-0.4
11,270	-				-0.5
11,270	-				-0.1
11,270	-				-0.3
11,270	-				-0.3
11,270	-				-2.4
11,270	-				-2.7
11,270	-				+0.8
11,270	-				-1.5
11,270	-				+0.1
11,270	-				-0.5
11,270	-				-0.6
11,270	-				-0.8
11,270	-				-1.9
11,270	-				+1.2
11,270	-				+0.4
11,270	-				+0.0
11,270	-				-0.0
11,270	-				-0.3
11,270	-				+0.7
11,271	+				-0.2
11,271	+				-0.0
11,271	+				-0.3
11,271	+				-0.4
11,271	+				-0.3
11,271	+				+0.4
11,271	+				+0.5
11,271	+				+0.0
11,271	+				+0.6
11,271	+				-0.3
11,272	-				-0.5
11,272	-				-1.0
11,272	-				-0.6
11,272	-				+1.9
11,272	-				+0.2
11,272	-				-0.3
11,272	-				+0.7
11,272	-				+0.0
11,272	-				+0.2
11,272	-				+0.3
11,272	-				-0.6
11,272	-				+0.6
11,273	+				+0.2
11,273	+				+0.1
11,274	-				-1.0
11,274	-				+0.0
11,274	-				+1.2
11,274	-				-0.6
11,274	-				+0.2
11,274	-				-1.0
11,274	-				-1.6
11,275	+				+0.4
11,275	+				-0.8
11,275	+				-0.4
11,275	+				+0.7
11,275	+				-1.0
11,275	+				-0.1
11,276	-				-1.5
11,276	-				-1.0
11,276	-				-1.0
11,279	-				-0.5
11,296	+				-1.6
11,296	+				-1.4
11,296	+				+0.9
11,296	+				-0.7
11,296	+				-0.4
11,296	+				+0.4
11,296	+				+0.1
11,296	+				-0.5
11,297	-				+0.6
11,297	-				+1.0
11,297	-				+0.5
11,297	-				-0.3
11,297	-				-0.5
11,297	-				+0.8
11,297	-				-0.5
11,297	-				+0.0
11,297	-				+1.2
11,297	-				-0.5
11,297	-				-0.8
11,457	+		GFF7381	0.18	-1.8
11,457	+		GFF7381	0.18	+1.0
11,457	+		GFF7381	0.18	-0.1
11,457	+		GFF7381	0.18	-0.3
11,457	+		GFF7381	0.18	-0.2
11,458	-		GFF7381	0.18	-1.2
11,458	-		GFF7381	0.18	-1.1
11,458	-		GFF7381	0.18	-1.2
11,458	-		GFF7381	0.18	-0.7
11,458	-		GFF7381	0.18	-1.3
11,458	-		GFF7381	0.18	-0.2
11,854	+		GFF7381	0.62	-0.2
11,854	+		GFF7381	0.62	+0.1
11,854	+		GFF7381	0.62	-0.3
11,854	+		GFF7381	0.62	-0.5
11,854	+		GFF7381	0.62	+0.5
11,855	-		GFF7381	0.62	-0.1
11,855	-		GFF7381	0.62	+0.3
11,855	-		GFF7381	0.62	-1.0
11,957	+		GFF7381	0.74	-0.8
11,957	+		GFF7381	0.74	-0.1
11,957	+		GFF7381	0.74	-0.7
11,957	+		GFF7381	0.74	-1.6
11,958	-		GFF7381	0.74	-1.6
11,958	-		GFF7381	0.74	-0.8
11,958	-		GFF7381	0.74	-1.1
11,958	-		GFF7381	0.74	-0.0
11,958	-		GFF7381	0.74	-0.7
11,965	+		GFF7381	0.75	+0.4
11,965	+		GFF7381	0.75	-0.5
11,965	+		GFF7381	0.75	-0.7
11,966	-		GFF7381	0.75	-2.0
11,966	-		GFF7381	0.75	-1.3
11,966	-		GFF7381	0.75	+1.1
11,966	-		GFF7381	0.75	+0.6
11,966	-		GFF7381	0.75	+1.1
11,966	-		GFF7381	0.75	-0.3
11,966	-		GFF7381	0.75	-0.8
11,966	-		GFF7381	0.75	-0.9
11,966	-		GFF7381	0.75	-0.9
11,966	-		GFF7381	0.75	-0.5
11,966	-		GFF7381	0.75	-0.1
12,005	+		GFF7381	0.79	+0.0
12,005	+		GFF7381	0.79	-1.6
12,005	+		GFF7381	0.79	-0.2
12,005	+		GFF7381	0.79	-0.2
12,005	+		GFF7381	0.79	-1.0
12,005	+		GFF7381	0.79	+1.5
12,005	+		GFF7381	0.79	-1.3
12,005	+		GFF7381	0.79	-0.0
12,005	+		GFF7381	0.79	-1.8
12,005	+		GFF7381	0.79	+1.2
12,005	+		GFF7381	0.79	+0.2
12,006	-		GFF7381	0.79	-0.0
12,006	-		GFF7381	0.79	-1.3
12,006	-		GFF7381	0.79	-0.7
12,006	-		GFF7381	0.79	-0.8
12,116	+				+0.0
12,116	+				+0.3
12,116	+				-0.7
12,116	+				-0.6
12,116	+				-0.2
12,116	+				-1.0
12,116	+				-1.0
12,116	+				-0.3
12,116	+				+1.0
12,116	+				-0.5
12,116	+				+0.0
12,116	+				-0.2
12,117	-				+0.3
12,117	-				-1.0
12,117	-				-0.5
12,117	-				-0.4
12,117	-				-0.6
12,117	-				-1.1
12,117	-				+0.5
12,117	-				-0.1
12,117	-				+0.3
12,117	-				-0.8
12,117	-				+1.5
12,117	-				+0.3
12,117	-				+0.8
12,117	-				-0.5
12,117	-				-1.0
12,117	-				+1.1
12,117	-				+0.5
12,117	-				-1.5
12,153	-				-0.7
12,175	-				-0.4
12,175	-				-1.5
12,175	-				-0.9
12,175	-				-0.5
12,175	-				-0.9
12,202	-				+0.5
12,202	-				-0.0
12,202	-				+0.4
12,202	-				+0.6
12,202	-				+0.5
12,202	-				-0.6
12,202	-				-0.6
12,202	-				-0.0
12,202	-				+0.4
12,202	-				+0.2
12,202	-				+0.0