Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7355 and GFF7356 are separated by 182 nucleotides GFF7356 and GFF7357 overlap by 4 nucleotides GFF7357 and GFF7358 overlap by 17 nucleotides
GFF7355 - 1,2-phenylacetyl-CoA epoxidase, subunit A (EC 1.14.13.149), at 3,254 to 4,243
GFF7355
GFF7356 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 4,426 to 5,151
GFF7356
GFF7357 - Phenylacetate ABC transporter, ATP-binding protein 1, at 5,148 to 5,912
GFF7357
GFF7358 - Phenylacetate ABC transporter, permease protein 2, at 5,896 to 6,864
GFF7358
Position (kb) 4
5
6 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3.493 kb on - strand, within GFF7355 at 3.765 kb on + strand, within GFF7355 at 3.765 kb on + strand, within GFF7355 at 3.774 kb on + strand, within GFF7355 at 3.774 kb on + strand, within GFF7355 at 3.868 kb on - strand, within GFF7355 at 3.885 kb on + strand, within GFF7355 at 3.885 kb on + strand, within GFF7355 at 3.957 kb on + strand, within GFF7355 at 3.957 kb on + strand, within GFF7355 at 3.957 kb on + strand, within GFF7355 at 3.957 kb on + strand, within GFF7355 at 3.958 kb on - strand, within GFF7355 at 3.961 kb on + strand, within GFF7355 at 3.961 kb on + strand, within GFF7355 at 3.961 kb on + strand, within GFF7355 at 3.961 kb on + strand, within GFF7355 at 3.961 kb on + strand, within GFF7355 at 3.962 kb on - strand, within GFF7355 at 3.963 kb on + strand, within GFF7355 at 3.963 kb on + strand, within GFF7355 at 3.963 kb on + strand, within GFF7355 at 3.963 kb on + strand, within GFF7355 at 3.963 kb on + strand, within GFF7355 at 3.964 kb on - strand, within GFF7355 at 3.964 kb on - strand, within GFF7355 at 3.964 kb on - strand, within GFF7355 at 4.056 kb on + strand, within GFF7355 at 4.056 kb on + strand, within GFF7355 at 4.056 kb on + strand, within GFF7355 at 4.056 kb on + strand, within GFF7355 at 4.057 kb on - strand, within GFF7355 at 4.057 kb on - strand, within GFF7355 at 4.239 kb on + strand at 4.239 kb on + strand at 4.239 kb on + strand at 4.240 kb on - strand at 4.240 kb on - strand at 4.439 kb on + strand at 4.440 kb on - strand at 4.517 kb on + strand, within GFF7356 at 4.518 kb on - strand, within GFF7356 at 4.518 kb on - strand, within GFF7356 at 4.779 kb on - strand, within GFF7356 at 5.074 kb on + strand, within GFF7356 at 5.102 kb on + strand at 5.167 kb on + strand at 5.167 kb on + strand at 5.168 kb on - strand at 5.449 kb on + strand, within GFF7357 at 5.450 kb on - strand, within GFF7357 at 5.753 kb on - strand, within GFF7357 at 6.014 kb on + strand, within GFF7358 at 6.014 kb on + strand, within GFF7358 at 6.015 kb on - strand, within GFF7358 at 6.015 kb on - strand, within GFF7358
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 3,493 - GFF7355 0.24 -0.2 3,765 + GFF7355 0.52 -0.4 3,765 + GFF7355 0.52 -2.3 3,774 + GFF7355 0.53 +0.3 3,774 + GFF7355 0.53 -0.5 3,868 - GFF7355 0.62 -0.3 3,885 + GFF7355 0.64 +0.4 3,885 + GFF7355 0.64 -0.6 3,957 + GFF7355 0.71 +2.7 3,957 + GFF7355 0.71 -0.9 3,957 + GFF7355 0.71 -0.3 3,957 + GFF7355 0.71 +0.6 3,958 - GFF7355 0.71 -0.2 3,961 + GFF7355 0.71 -1.2 3,961 + GFF7355 0.71 -0.4 3,961 + GFF7355 0.71 +0.6 3,961 + GFF7355 0.71 -0.1 3,961 + GFF7355 0.71 -1.0 3,962 - GFF7355 0.72 -0.6 3,963 + GFF7355 0.72 -1.4 3,963 + GFF7355 0.72 -0.4 3,963 + GFF7355 0.72 +1.0 3,963 + GFF7355 0.72 -1.8 3,963 + GFF7355 0.72 +0.7 3,964 - GFF7355 0.72 -0.5 3,964 - GFF7355 0.72 -1.2 3,964 - GFF7355 0.72 -0.9 4,056 + GFF7355 0.81 +1.4 4,056 + GFF7355 0.81 +0.4 4,056 + GFF7355 0.81 +0.4 4,056 + GFF7355 0.81 -0.6 4,057 - GFF7355 0.81 -0.6 4,057 - GFF7355 0.81 -1.2 4,239 + -0.1 4,239 + +0.7 4,239 + -0.7 4,240 - -1.2 4,240 - -0.7 4,439 + -0.8 4,440 - -0.2 4,517 + GFF7356 0.13 -0.5 4,518 - GFF7356 0.13 -0.5 4,518 - GFF7356 0.13 -2.2 4,779 - GFF7356 0.49 -0.0 5,074 + GFF7356 0.89 -0.7 5,102 + -0.3 5,167 + -0.6 5,167 + -1.6 5,168 - -0.9 5,449 + GFF7357 0.39 +0.0 5,450 - GFF7357 0.39 +0.4 5,753 - GFF7357 0.79 -0.7 6,014 + GFF7358 0.12 -0.4 6,014 + GFF7358 0.12 +0.0 6,015 - GFF7358 0.12 +0.3 6,015 - GFF7358 0.12 +1.2
Or see this region's nucleotide sequence