Strain Fitness in Variovorax sp. SCN45 around GFF7316

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
8,413	+		GFF7314	0.70	+2.2
8,413	+		GFF7314	0.70	-0.8
8,413	+		GFF7314	0.70	-2.6
8,413	+		GFF7314	0.70	+0.8
8,413	+		GFF7314	0.70	-1.8
8,413	+		GFF7314	0.70	+1.5
8,413	+		GFF7314	0.70	-0.4
8,413	+		GFF7314	0.70	-0.4
8,413	+		GFF7314	0.70	+0.0
8,414	-		GFF7314	0.70	+0.0
8,414	-		GFF7314	0.70	+0.4
8,414	-		GFF7314	0.70	-0.9
8,427	+		GFF7314	0.72	-0.0
8,427	+		GFF7314	0.72	-1.4
8,427	+		GFF7314	0.72	+0.8
8,427	+		GFF7314	0.72	-0.3
8,427	+		GFF7314	0.72	+0.3
8,427	+		GFF7314	0.72	-1.4
8,428	-		GFF7314	0.72	+0.4
8,428	-		GFF7314	0.72	-0.3
8,428	-		GFF7314	0.72	-0.8
8,428	-		GFF7314	0.72	-0.1
8,428	-		GFF7314	0.72	-0.2
8,428	-		GFF7314	0.72	-1.2
8,428	-		GFF7314	0.72	+1.1
8,452	+		GFF7314	0.75	+0.6
8,452	+		GFF7314	0.75	-1.4
8,452	+		GFF7314	0.75	+0.3
8,452	+		GFF7314	0.75	-0.6
8,452	+		GFF7314	0.75	-0.3
8,452	+		GFF7314	0.75	+0.3
8,452	+		GFF7314	0.75	-0.0
8,452	+		GFF7314	0.75	+0.4
8,452	+		GFF7314	0.75	-0.8
8,452	+		GFF7314	0.75	-0.3
8,452	+		GFF7314	0.75	-0.3
8,452	+		GFF7314	0.75	-0.6
8,452	+		GFF7314	0.75	-1.2
8,452	+		GFF7314	0.75	-0.4
8,452	+		GFF7314	0.75	-0.2
8,452	+		GFF7314	0.75	+0.1
8,452	+		GFF7314	0.75	-1.6
8,452	+		GFF7314	0.75	+0.9
8,452	+		GFF7314	0.75	-0.2
8,452	+		GFF7314	0.75	-1.2
8,452	+		GFF7314	0.75	-0.4
8,452	+		GFF7314	0.75	-0.1
8,452	+		GFF7314	0.75	+2.0
8,453	-		GFF7314	0.75	+1.0
8,453	-		GFF7314	0.75	-0.1
8,453	-		GFF7314	0.75	-0.3
8,453	-		GFF7314	0.75	-0.5
8,453	-		GFF7314	0.75	-0.5
8,453	-		GFF7314	0.75	-0.4
8,453	-		GFF7314	0.75	-0.1
8,453	-		GFF7314	0.75	-1.8
8,453	-		GFF7314	0.75	-0.4
8,453	-		GFF7314	0.75	-1.0
8,453	-		GFF7314	0.75	-0.2
8,453	-		GFF7314	0.75	-0.1
8,453	-		GFF7314	0.75	-0.0
8,453	-		GFF7314	0.75	-0.6
8,453	-		GFF7314	0.75	-0.3
8,453	-		GFF7314	0.75	+0.4
8,453	-		GFF7314	0.75	+0.0
8,453	-		GFF7314	0.75	-0.5
8,453	-		GFF7314	0.75	+0.8
8,453	-		GFF7314	0.75	+0.7
8,453	-		GFF7314	0.75	+0.1
8,453	-		GFF7314	0.75	-1.2
8,467	-		GFF7314	0.77	-0.6
8,494	+		GFF7314	0.81	-0.0
8,494	+		GFF7314	0.81	-0.6
8,494	+		GFF7314	0.81	-0.9
8,494	+		GFF7314	0.81	-1.1
8,494	+		GFF7314	0.81	-0.1
8,494	+		GFF7314	0.81	+1.2
8,494	+		GFF7314	0.81	+0.1
8,494	+		GFF7314	0.81	+0.7
8,494	+		GFF7314	0.81	+0.3
8,495	-		GFF7314	0.81	+1.9
8,495	-		GFF7314	0.81	-0.3
8,495	-		GFF7314	0.81	-1.4
8,495	-		GFF7314	0.81	-0.7
8,495	-		GFF7314	0.81	-0.5
8,495	-		GFF7314	0.81	-0.1
8,495	-		GFF7314	0.81	+0.2
8,495	-		GFF7314	0.81	-0.3
8,495	-		GFF7314	0.81	-1.2
8,495	-		GFF7314	0.81	+0.9
8,495	-		GFF7314	0.81	-0.1
8,495	-		GFF7314	0.81	-1.2
8,558	+		GFF7314	0.89	-0.5
8,558	+		GFF7314	0.89	+1.0
8,559	-		GFF7314	0.89	+0.3
8,726	-		GFF7315	0.11	+2.3
8,735	+		GFF7315	0.13	-0.3
8,735	+		GFF7315	0.13	+0.2
8,736	-		GFF7315	0.13	-0.5
8,856	-		GFF7315	0.30	+1.5
8,857	+		GFF7315	0.30	-0.2
8,857	+		GFF7315	0.30	+1.0
8,858	-		GFF7315	0.30	-0.3
8,858	-		GFF7315	0.30	-0.4
8,858	-		GFF7315	0.30	-0.9
8,928	+		GFF7315	0.40	+0.3
8,928	+		GFF7315	0.40	-1.9
8,929	-		GFF7315	0.40	-0.8
8,929	-		GFF7315	0.40	-0.4
8,929	-		GFF7315	0.40	-1.5
9,005	+		GFF7315	0.51	+0.9
9,006	-		GFF7315	0.51	-0.8
9,135	+		GFF7315	0.69	+1.4
9,135	+		GFF7315	0.69	+0.5
9,136	-		GFF7315	0.69	+0.1
9,136	-		GFF7315	0.69	+0.5
9,335	+				-0.5
9,335	+				+1.4
9,335	+				-0.3
9,335	+				-1.8
9,335	+				-0.4
9,335	+				-0.4
9,335	+				-0.7
9,335	+				-1.3
9,335	+				+0.6
9,335	+				-0.4
9,336	-				+0.1
9,336	-				-0.2
9,336	-				+0.3
9,485	+		GFF7316	0.49	-0.5
9,485	+		GFF7316	0.49	-0.6
9,485	+		GFF7316	0.49	-1.7
9,485	+		GFF7316	0.49	+0.0
9,485	+		GFF7316	0.49	-0.7
9,485	+		GFF7316	0.49	-0.1
9,485	+		GFF7316	0.49	-0.9
9,485	+		GFF7316	0.49	+0.4
9,485	+		GFF7316	0.49	+1.2
9,485	+		GFF7316	0.49	+1.6
9,485	+		GFF7316	0.49	+0.3
9,485	+		GFF7316	0.49	-1.1
9,485	+		GFF7316	0.49	-1.1
9,485	+		GFF7316	0.49	+0.2
9,485	+		GFF7316	0.49	-0.2
9,485	+		GFF7316	0.49	-0.0
9,485	+		GFF7316	0.49	-0.5
9,486	-		GFF7316	0.49	-0.7
9,486	-		GFF7316	0.49	-0.4
9,486	-		GFF7316	0.49	-0.5
9,486	-		GFF7316	0.49	+1.1
9,486	-		GFF7316	0.49	-0.2
9,486	-		GFF7316	0.49	-0.7
9,486	-		GFF7316	0.49	-1.3
9,633	+				-0.4
9,633	+				-0.2
9,633	+				+1.1
9,633	+				-1.0
9,633	+				-0.5
9,633	+				+0.1
9,633	+				-0.9
9,633	+				-0.4
9,634	-				+1.2
9,634	-				-1.0
9,634	-				-1.2
9,634	-				-0.6
9,715	+				-0.0
9,715	+				+0.2
9,716	-				+1.0
9,716	-				+0.1
9,716	-				+0.5
9,716	-				-0.2
9,716	-				+0.1
9,733	+				+1.0
9,733	+				+2.2
9,733	+				-0.1
9,733	+				-0.4
9,733	+				+0.1
9,733	+				-0.4
9,733	+				+0.8
9,733	+				+0.0
9,733	+				+0.5
9,733	+				-0.8
9,733	+				-0.2
9,734	-				+0.2
9,734	-				+0.3
9,734	-				+0.6
9,734	-				+1.6
9,734	-				+0.5
9,734	-				+0.4
9,734	-				+2.6
9,734	-				-0.7
9,734	-				+0.2
9,734	-				-0.4
9,734	-				+0.1
9,734	-				-1.2
9,734	-				-1.1
9,734	-				+0.5
9,751	+				+0.2
9,751	+				-0.4
9,751	+				-0.1
9,751	+				-0.4
9,751	+				-0.1
9,751	+				+0.1
9,751	+				-1.2
9,751	+				+0.2
9,751	+				-0.5
9,751	+				+0.1
9,751	+				+0.2
9,751	+				+0.4
9,751	+				-0.9
9,751	+				-0.1
9,751	+				-1.4
9,751	+				-0.2
9,751	+				-0.0
9,751	+				-0.5
9,751	+				-0.5
9,751	+				-1.1
9,751	+				-2.0
9,751	+				+0.1
9,751	+				+0.8
9,751	+				+1.3
9,751	+				-0.2
9,751	+				+0.2
9,751	+				+0.5
9,751	+				-0.1
9,751	+				+0.3
9,752	-				+0.6
9,752	-				+0.4
9,752	-				+0.1
9,752	-				+0.6
9,752	-				-0.4
9,752	-				+0.5
9,752	-				+0.1
9,752	-				+1.1
9,752	-				+0.9
9,752	-				+0.3
9,752	-				+1.6
9,752	-				-0.5
9,752	-				-0.2
9,752	-				-0.0
9,752	-				+3.6
9,752	-				+0.8
9,752	-				+0.5
9,752	-				+0.5
9,752	-				+0.2
9,752	-				+1.2
9,752	-				-0.4
9,752	-				+0.2
9,752	-				+0.1
9,752	-				+1.0
9,752	-				+1.6
10,035	+		GFF7317	0.12	-1.0
10,126	+		GFF7317	0.15	-1.1
10,126	+		GFF7317	0.15	-1.5
10,126	+		GFF7317	0.15	-0.2
10,126	+		GFF7317	0.15	-0.5
10,126	+		GFF7317	0.15	-0.1
10,126	+		GFF7317	0.15	+1.1
10,126	+		GFF7317	0.15	+0.4
10,126	+		GFF7317	0.15	-0.4
10,126	+		GFF7317	0.15	-0.7
10,126	+		GFF7317	0.15	-0.4
10,126	+		GFF7317	0.15	+0.2
10,126	+		GFF7317	0.15	-0.2
10,126	+		GFF7317	0.15	+0.5
10,126	+		GFF7317	0.15	-1.1
10,127	-		GFF7317	0.15	+0.3
10,127	-		GFF7317	0.15	-0.7
10,127	-		GFF7317	0.15	-0.4
10,127	-		GFF7317	0.15	-0.4
10,127	-		GFF7317	0.15	-1.6
10,127	-		GFF7317	0.15	+0.0
10,135	+		GFF7317	0.16	-0.3
10,135	+		GFF7317	0.16	-0.2
10,135	+		GFF7317	0.16	-0.4
10,135	+		GFF7317	0.16	+0.5
10,135	+		GFF7317	0.16	-0.2
10,136	-		GFF7317	0.16	-0.8
10,136	-		GFF7317	0.16	+1.3
10,136	-		GFF7317	0.16	-1.3
10,156	+		GFF7317	0.16	+0.3
10,156	+		GFF7317	0.16	-0.1
10,156	+		GFF7317	0.16	+1.3
10,156	+		GFF7317	0.16	-0.7
10,156	+		GFF7317	0.16	+0.2
10,156	+		GFF7317	0.16	+1.1
10,156	+		GFF7317	0.16	-1.1
10,156	+		GFF7317	0.16	-1.6
10,156	+		GFF7317	0.16	-0.3
10,156	+		GFF7317	0.16	+0.2
10,156	+		GFF7317	0.16	+0.1
10,156	+		GFF7317	0.16	-0.8
10,156	+		GFF7317	0.16	+0.0
10,156	+		GFF7317	0.16	-0.5
10,156	+		GFF7317	0.16	+1.6
10,156	+		GFF7317	0.16	-0.1
10,156	+		GFF7317	0.16	-0.3
10,156	+		GFF7317	0.16	+0.1
10,156	+		GFF7317	0.16	-0.5
10,156	+		GFF7317	0.16	-0.2
10,156	+		GFF7317	0.16	+0.1
10,156	+		GFF7317	0.16	-1.2
10,156	+		GFF7317	0.16	+0.0
10,156	+		GFF7317	0.16	-0.1
10,157	-		GFF7317	0.16	-0.2
10,157	-		GFF7317	0.16	+0.3
10,157	-		GFF7317	0.16	+0.1
10,157	-		GFF7317	0.16	+0.1
10,157	-		GFF7317	0.16	+0.1
10,157	-		GFF7317	0.16	-0.2
10,157	-		GFF7317	0.16	+0.5
10,157	-		GFF7317	0.16	+0.3
10,157	-		GFF7317	0.16	-0.9
10,157	-		GFF7317	0.16	-0.6
10,157	-		GFF7317	0.16	-0.4
10,157	-		GFF7317	0.16	+0.6
10,157	-		GFF7317	0.16	+1.1
10,157	-		GFF7317	0.16	+0.6
10,157	-		GFF7317	0.16	-0.4
10,157	-		GFF7317	0.16	+1.3
10,157	-		GFF7317	0.16	-0.4
10,157	-		GFF7317	0.16	-0.7
10,157	-		GFF7317	0.16	+0.3
10,157	-		GFF7317	0.16	-0.1
10,157	-		GFF7317	0.16	+0.2
10,234	+		GFF7317	0.19	-0.4
10,234	+		GFF7317	0.19	-0.0
10,234	+		GFF7317	0.19	-0.6
10,234	+		GFF7317	0.19	-0.5
10,234	+		GFF7317	0.19	-1.9
10,234	+		GFF7317	0.19	+0.0
10,234	+		GFF7317	0.19	-1.0
10,234	+		GFF7317	0.19	-1.9
10,234	+		GFF7317	0.19	-0.3
10,235	-		GFF7317	0.19	-0.9
10,235	-		GFF7317	0.19	-0.2
10,235	-		GFF7317	0.19	-0.2
10,235	-		GFF7317	0.19	+1.1
10,235	-		GFF7317	0.19	+1.6
10,235	-		GFF7317	0.19	-1.5
10,235	-		GFF7317	0.19	-0.2
10,235	-		GFF7317	0.19	+1.3
10,235	-		GFF7317	0.19	+0.4
10,235	-		GFF7317	0.19	+0.1
10,235	-		GFF7317	0.19	+0.3
10,510	+		GFF7317	0.28	-0.0
10,510	+		GFF7317	0.28	-0.4
10,510	+		GFF7317	0.28	+0.1
10,510	+		GFF7317	0.28	+0.2
10,510	+		GFF7317	0.28	+0.5
10,510	+		GFF7317	0.28	+0.6
10,510	+		GFF7317	0.28	-1.4
10,510	+		GFF7317	0.28	+0.2
10,510	+		GFF7317	0.28	+0.4
10,510	+		GFF7317	0.28	-0.4
10,511	-		GFF7317	0.28	-0.1
10,511	-		GFF7317	0.28	-0.6
10,511	-		GFF7317	0.28	+0.6
10,511	-		GFF7317	0.28	+2.2
10,511	-		GFF7317	0.28	+0.1
10,511	-		GFF7317	0.28	-0.7
10,511	-		GFF7317	0.28	-0.4
10,511	-		GFF7317	0.28	-0.2
10,511	-		GFF7317	0.28	+0.4
10,511	-		GFF7317	0.28	-0.7
10,511	-		GFF7317	0.28	+0.4
10,511	-		GFF7317	0.28	-1.5
10,528	+		GFF7317	0.28	+0.1
10,528	+		GFF7317	0.28	-1.2
10,528	+		GFF7317	0.28	+1.4
10,528	+		GFF7317	0.28	-0.6
10,528	+		GFF7317	0.28	-0.7
10,529	-		GFF7317	0.28	-0.2
10,529	-		GFF7317	0.28	-0.5
10,529	-		GFF7317	0.28	-0.1
10,529	-		GFF7317	0.28	+0.1
10,529	-		GFF7317	0.28	+0.3
10,529	-		GFF7317	0.28	-0.0
10,529	-		GFF7317	0.28	+0.2
10,555	+		GFF7317	0.29	+0.6
10,555	+		GFF7317	0.29	+0.4
10,555	+		GFF7317	0.29	-0.7
10,556	-		GFF7317	0.29	-0.4
10,556	-		GFF7317	0.29	+0.2
10,556	-		GFF7317	0.29	+0.8
10,556	-		GFF7317	0.29	-0.3
10,564	+		GFF7317	0.29	+0.1
10,564	+		GFF7317	0.29	+0.8
10,564	+		GFF7317	0.29	+0.3
10,564	+		GFF7317	0.29	+0.1
10,564	+		GFF7317	0.29	-0.3
10,565	-		GFF7317	0.29	+0.3
10,565	-		GFF7317	0.29	+0.8
10,565	-		GFF7317	0.29	-0.5