Strain Fitness in Variovorax sp. SCN45 around GFF7117

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7115 and GFF7116 are separated by 16 nucleotidesGFF7116 and GFF7117 overlap by 4 nucleotidesGFF7117 and GFF7118 overlap by 4 nucleotidesGFF7118 and GFF7119 are separated by 6 nucleotides GFF7115 - hypothetical protein, at 33,663 to 34,481 GFF7115 GFF7116 - 2,3-dihydroxybiphenyl 1,2-dioxygenase (EC 1.13.11.39), at 34,498 to 35,412 GFF7116 GFF7117 - 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9), at 35,409 to 36,239 GFF7117 GFF7118 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 36,236 to 37,177 GFF7118 GFF7119 - Ortho-halobenzoate 1,2-dioxygenase beta-ISP protein OhbA, at 37,184 to 37,660 GFF7119 Position (kb) 35 36 37Strain fitness (log2 ratio) -2 -1 0 1 2 3at 34.535 kb on + strandat 34.535 kb on + strandat 34.535 kb on + strandat 34.535 kb on + strandat 34.535 kb on + strandat 34.535 kb on + strandat 34.536 kb on - strandat 34.536 kb on - strandat 34.536 kb on - strandat 34.536 kb on - strandat 34.538 kb on + strandat 34.538 kb on + strandat 34.538 kb on + strandat 34.538 kb on + strandat 34.539 kb on - strandat 34.550 kb on + strandat 34.551 kb on - strandat 34.551 kb on - strandat 34.553 kb on + strandat 34.553 kb on + strandat 34.554 kb on - strandat 34.554 kb on - strandat 34.554 kb on - strandat 34.554 kb on - strandat 34.625 kb on + strand, within GFF7116at 34.625 kb on + strand, within GFF7116at 34.625 kb on + strand, within GFF7116at 34.626 kb on - strand, within GFF7116at 34.626 kb on - strand, within GFF7116at 34.626 kb on - strand, within GFF7116at 34.678 kb on + strand, within GFF7116at 34.678 kb on + strand, within GFF7116at 34.678 kb on + strand, within GFF7116at 34.679 kb on - strand, within GFF7116at 34.679 kb on - strand, within GFF7116at 34.679 kb on - strand, within GFF7116at 34.679 kb on - strand, within GFF7116at 34.679 kb on - strand, within GFF7116at 34.679 kb on - strand, within GFF7116at 34.733 kb on + strand, within GFF7116at 34.733 kb on + strand, within GFF7116at 34.733 kb on + strand, within GFF7116at 34.734 kb on - strand, within GFF7116at 34.734 kb on - strand, within GFF7116at 34.734 kb on - strand, within GFF7116at 34.734 kb on - strand, within GFF7116at 34.789 kb on + strand, within GFF7116at 34.789 kb on + strand, within GFF7116at 34.789 kb on + strand, within GFF7116at 34.790 kb on - strand, within GFF7116at 34.790 kb on - strand, within GFF7116at 34.863 kb on - strand, within GFF7116at 34.895 kb on + strand, within GFF7116at 34.895 kb on + strand, within GFF7116at 34.895 kb on + strand, within GFF7116at 34.895 kb on + strand, within GFF7116at 34.896 kb on - strand, within GFF7116at 34.896 kb on - strand, within GFF7116at 34.896 kb on - strand, within GFF7116at 35.014 kb on + strand, within GFF7116at 35.015 kb on - strand, within GFF7116at 35.015 kb on - strand, within GFF7116at 35.015 kb on - strand, within GFF7116at 35.028 kb on - strand, within GFF7116at 35.028 kb on - strand, within GFF7116at 35.028 kb on - strand, within GFF7116at 35.028 kb on - strand, within GFF7116at 35.028 kb on - strand, within GFF7116at 35.028 kb on - strand, within GFF7116at 35.046 kb on + strand, within GFF7116at 35.047 kb on - strand, within GFF7116at 35.154 kb on + strand, within GFF7116at 35.154 kb on + strand, within GFF7116at 35.154 kb on + strand, within GFF7116at 35.154 kb on + strand, within GFF7116at 35.155 kb on - strand, within GFF7116at 35.155 kb on - strand, within GFF7116at 35.155 kb on - strand, within GFF7116at 35.155 kb on - strand, within GFF7116at 35.155 kb on - strand, within GFF7116at 35.155 kb on - strand, within GFF7116at 35.195 kb on + strand, within GFF7116at 35.195 kb on + strand, within GFF7116at 35.196 kb on - strand, within GFF7116at 35.200 kb on + strand, within GFF7116at 35.200 kb on + strand, within GFF7116at 35.200 kb on + strand, within GFF7116at 35.200 kb on + strand, within GFF7116at 35.200 kb on + strand, within GFF7116at 35.200 kb on + strand, within GFF7116at 35.200 kb on + strand, within GFF7116at 35.200 kb on + strand, within GFF7116at 35.200 kb on + strand, within GFF7116at 35.200 kb on + strand, within GFF7116at 35.200 kb on + strand, within GFF7116at 35.200 kb on + strand, within GFF7116at 35.200 kb on + strand, within GFF7116at 35.200 kb on + strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.201 kb on - strand, within GFF7116at 35.315 kb on + strand, within GFF7116at 35.315 kb on + strand, within GFF7116at 35.316 kb on - strand, within GFF7116at 35.316 kb on - strand, within GFF7116at 35.316 kb on - strand, within GFF7116at 35.316 kb on - strand, within GFF7116at 35.357 kb on + strandat 35.357 kb on + strandat 35.358 kb on - strandat 35.582 kb on + strand, within GFF7117at 35.583 kb on + strand, within GFF7117at 35.583 kb on + strand, within GFF7117at 35.583 kb on + strand, within GFF7117at 35.583 kb on + strand, within GFF7117at 35.583 kb on + strand, within GFF7117at 35.583 kb on + strand, within GFF7117at 35.584 kb on - strand, within GFF7117at 35.584 kb on - strand, within GFF7117at 35.584 kb on - strand, within GFF7117at 35.584 kb on - strand, within GFF7117at 35.584 kb on - strand, within GFF7117at 35.584 kb on - strand, within GFF7117at 35.584 kb on - strand, within GFF7117at 35.584 kb on - strand, within GFF7117at 35.584 kb on - strand, within GFF7117at 35.584 kb on - strand, within GFF7117at 35.584 kb on - strand, within GFF7117at 35.771 kb on + strand, within GFF7117at 35.771 kb on + strand, within GFF7117at 35.771 kb on + strand, within GFF7117at 35.771 kb on + strand, within GFF7117at 35.771 kb on + strand, within GFF7117at 35.771 kb on + strand, within GFF7117at 35.771 kb on + strand, within GFF7117at 35.772 kb on - strand, within GFF7117at 35.772 kb on - strand, within GFF7117at 35.772 kb on - strand, within GFF7117at 35.772 kb on - strand, within GFF7117at 35.797 kb on + strand, within GFF7117at 35.971 kb on + strand, within GFF7117at 35.992 kb on + strand, within GFF7117at 35.992 kb on + strand, within GFF7117at 35.992 kb on + strand, within GFF7117at 35.992 kb on + strand, within GFF7117at 35.993 kb on - strand, within GFF7117at 35.993 kb on - strand, within GFF7117at 36.004 kb on + strand, within GFF7117at 36.094 kb on + strand, within GFF7117at 36.094 kb on + strand, within GFF7117at 36.095 kb on - strand, within GFF7117at 36.095 kb on - strand, within GFF7117at 36.095 kb on - strand, within GFF7117at 36.095 kb on - strand, within GFF7117at 36.109 kb on + strand, within GFF7117at 36.175 kb on + strandat 36.175 kb on + strandat 36.175 kb on + strandat 36.176 kb on - strandat 36.176 kb on - strandat 36.176 kb on - strandat 36.176 kb on - strandat 36.186 kb on + strandat 36.186 kb on + strandat 36.186 kb on + strandat 36.186 kb on + strandat 36.187 kb on - strandat 36.230 kb on + strandat 36.230 kb on + strandat 36.230 kb on + strandat 36.230 kb on + strandat 36.230 kb on + strandat 36.230 kb on + strandat 36.231 kb on - strandat 36.231 kb on - strandat 36.231 kb on - strandat 36.447 kb on + strand, within GFF7118at 36.447 kb on + strand, within GFF7118at 36.447 kb on + strand, within GFF7118at 36.448 kb on - strand, within GFF7118at 36.448 kb on - strand, within GFF7118at 36.448 kb on - strand, within GFF7118at 36.921 kb on - strand, within GFF7118at 36.924 kb on + strand, within GFF7118at 36.924 kb on + strand, within GFF7118at 36.924 kb on + strand, within GFF7118at 36.925 kb on - strand, within GFF7118at 36.925 kb on - strand, within GFF7118at 36.925 kb on - strand, within GFF7118at 36.925 kb on - strand, within GFF7118at 36.925 kb on - strand, within GFF7118at 36.925 kb on - strand, within GFF7118at 36.925 kb on - strand, within GFF7118at 36.925 kb on - strand, within GFF7118at 36.925 kb on - strand, within GFF7118at 36.972 kb on + strand, within GFF7118at 36.972 kb on + strand, within GFF7118at 36.972 kb on + strand, within GFF7118at 36.972 kb on + strand, within GFF7118at 36.973 kb on - strand, within GFF7118at 36.973 kb on - strand, within GFF7118at 37.032 kb on + strand, within GFF7118at 37.185 kb on + strandat 37.185 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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34,535 + -0.0
34,535 + -0.6
34,535 + -0.6
34,535 + -0.7
34,535 + -1.0
34,535 + +0.8
34,536 - -0.4
34,536 - +0.3
34,536 - +1.2
34,536 - -0.3
34,538 + -0.5
34,538 + +0.0
34,538 + -2.0
34,538 + -1.2
34,539 - -0.3
34,550 + -0.6
34,551 - -1.5
34,551 - +0.6
34,553 + +1.4
34,553 + -0.6
34,554 - -1.7
34,554 - +0.2
34,554 - +0.2
34,554 - +0.2
34,625 + GFF7116 0.14 -0.7
34,625 + GFF7116 0.14 +0.5
34,625 + GFF7116 0.14 -0.2
34,626 - GFF7116 0.14 -0.4
34,626 - GFF7116 0.14 -0.5
34,626 - GFF7116 0.14 -0.5
34,678 + GFF7116 0.20 +0.2
34,678 + GFF7116 0.20 +0.2
34,678 + GFF7116 0.20 -0.3
34,679 - GFF7116 0.20 +0.4
34,679 - GFF7116 0.20 -0.2
34,679 - GFF7116 0.20 -0.2
34,679 - GFF7116 0.20 -0.6
34,679 - GFF7116 0.20 +0.2
34,679 - GFF7116 0.20 +0.2
34,733 + GFF7116 0.26 -0.7
34,733 + GFF7116 0.26 +0.9
34,733 + GFF7116 0.26 -2.5
34,734 - GFF7116 0.26 -0.8
34,734 - GFF7116 0.26 -0.8
34,734 - GFF7116 0.26 -0.4
34,734 - GFF7116 0.26 -0.0
34,789 + GFF7116 0.32 +0.2
34,789 + GFF7116 0.32 +0.5
34,789 + GFF7116 0.32 -0.9
34,790 - GFF7116 0.32 +1.4
34,790 - GFF7116 0.32 -0.4
34,863 - GFF7116 0.40 -0.4
34,895 + GFF7116 0.43 +0.1
34,895 + GFF7116 0.43 +0.6
34,895 + GFF7116 0.43 +0.3
34,895 + GFF7116 0.43 -1.0
34,896 - GFF7116 0.43 -0.6
34,896 - GFF7116 0.43 +0.3
34,896 - GFF7116 0.43 +0.3
35,014 + GFF7116 0.56 -2.1
35,015 - GFF7116 0.57 +0.4
35,015 - GFF7116 0.57 -0.6
35,015 - GFF7116 0.57 +0.1
35,028 - GFF7116 0.58 -0.8
35,028 - GFF7116 0.58 -1.9
35,028 - GFF7116 0.58 +0.3
35,028 - GFF7116 0.58 +0.6
35,028 - GFF7116 0.58 +1.2
35,028 - GFF7116 0.58 +0.2
35,046 + GFF7116 0.60 -1.1
35,047 - GFF7116 0.60 -0.1
35,154 + GFF7116 0.72 -1.0
35,154 + GFF7116 0.72 -0.5
35,154 + GFF7116 0.72 -0.4
35,154 + GFF7116 0.72 -0.1
35,155 - GFF7116 0.72 +1.5
35,155 - GFF7116 0.72 -0.8
35,155 - GFF7116 0.72 -1.0
35,155 - GFF7116 0.72 -0.8
35,155 - GFF7116 0.72 +0.5
35,155 - GFF7116 0.72 +0.3
35,195 + GFF7116 0.76 -1.1
35,195 + GFF7116 0.76 -1.9
35,196 - GFF7116 0.76 +0.3
35,200 + GFF7116 0.77 -0.4
35,200 + GFF7116 0.77 +0.1
35,200 + GFF7116 0.77 -0.7
35,200 + GFF7116 0.77 -0.0
35,200 + GFF7116 0.77 -0.2
35,200 + GFF7116 0.77 -0.5
35,200 + GFF7116 0.77 -0.9
35,200 + GFF7116 0.77 -0.7
35,200 + GFF7116 0.77 -0.4
35,200 + GFF7116 0.77 -0.2
35,200 + GFF7116 0.77 -0.1
35,200 + GFF7116 0.77 +0.5
35,200 + GFF7116 0.77 +0.3
35,200 + GFF7116 0.77 -0.5
35,201 - GFF7116 0.77 +0.4
35,201 - GFF7116 0.77 +0.4
35,201 - GFF7116 0.77 +1.2
35,201 - GFF7116 0.77 -2.0
35,201 - GFF7116 0.77 +0.0
35,201 - GFF7116 0.77 -0.3
35,201 - GFF7116 0.77 -0.3
35,201 - GFF7116 0.77 +0.2
35,201 - GFF7116 0.77 -0.5
35,201 - GFF7116 0.77 +0.1
35,201 - GFF7116 0.77 -0.2
35,201 - GFF7116 0.77 +0.5
35,201 - GFF7116 0.77 +0.0
35,201 - GFF7116 0.77 +0.8
35,201 - GFF7116 0.77 -0.6
35,201 - GFF7116 0.77 -0.2
35,201 - GFF7116 0.77 +0.1
35,201 - GFF7116 0.77 -0.4
35,201 - GFF7116 0.77 +0.4
35,201 - GFF7116 0.77 -0.7
35,315 + GFF7116 0.89 -0.1
35,315 + GFF7116 0.89 +0.4
35,316 - GFF7116 0.89 -0.3
35,316 - GFF7116 0.89 -0.2
35,316 - GFF7116 0.89 +1.8
35,316 - GFF7116 0.89 -0.7
35,357 + -1.0
35,357 + -0.3
35,358 - -2.2
35,582 + GFF7117 0.21 -0.4
35,583 + GFF7117 0.21 +0.8
35,583 + GFF7117 0.21 -2.6
35,583 + GFF7117 0.21 -0.1
35,583 + GFF7117 0.21 -0.5
35,583 + GFF7117 0.21 -0.1
35,583 + GFF7117 0.21 +0.2
35,584 - GFF7117 0.21 -2.6
35,584 - GFF7117 0.21 -1.7
35,584 - GFF7117 0.21 +0.0
35,584 - GFF7117 0.21 -0.5
35,584 - GFF7117 0.21 -1.1
35,584 - GFF7117 0.21 +0.0
35,584 - GFF7117 0.21 +0.8
35,584 - GFF7117 0.21 -0.8
35,584 - GFF7117 0.21 -1.5
35,584 - GFF7117 0.21 -0.1
35,584 - GFF7117 0.21 +3.1
35,771 + GFF7117 0.44 +1.6
35,771 + GFF7117 0.44 +0.3
35,771 + GFF7117 0.44 -1.1
35,771 + GFF7117 0.44 -0.5
35,771 + GFF7117 0.44 +0.6
35,771 + GFF7117 0.44 -0.5
35,771 + GFF7117 0.44 +2.4
35,772 - GFF7117 0.44 -0.3
35,772 - GFF7117 0.44 +0.6
35,772 - GFF7117 0.44 +0.6
35,772 - GFF7117 0.44 +1.2
35,797 + GFF7117 0.47 -1.5
35,971 + GFF7117 0.68 +0.3
35,992 + GFF7117 0.70 -0.8
35,992 + GFF7117 0.70 -0.3
35,992 + GFF7117 0.70 -0.1
35,992 + GFF7117 0.70 -1.0
35,993 - GFF7117 0.70 -0.5
35,993 - GFF7117 0.70 -0.1
36,004 + GFF7117 0.72 +0.6
36,094 + GFF7117 0.82 +0.2
36,094 + GFF7117 0.82 -0.4
36,095 - GFF7117 0.83 +0.9
36,095 - GFF7117 0.83 -0.1
36,095 - GFF7117 0.83 +0.2
36,095 - GFF7117 0.83 +1.0
36,109 + GFF7117 0.84 +1.4
36,175 + -1.5
36,175 + -0.9
36,175 + -0.7
36,176 - -0.1
36,176 - -0.3
36,176 - -2.0
36,176 - -0.6
36,186 + -1.2
36,186 + -0.6
36,186 + +0.0
36,186 + -0.4
36,187 - -0.8
36,230 + -0.7
36,230 + +0.1
36,230 + -0.4
36,230 + -0.2
36,230 + -2.4
36,230 + -0.4
36,231 - +0.5
36,231 - -0.2
36,231 - -1.1
36,447 + GFF7118 0.22 +0.6
36,447 + GFF7118 0.22 +1.0
36,447 + GFF7118 0.22 +1.8
36,448 - GFF7118 0.23 -0.8
36,448 - GFF7118 0.23 -0.7
36,448 - GFF7118 0.23 -1.4
36,921 - GFF7118 0.73 -0.4
36,924 + GFF7118 0.73 -0.3
36,924 + GFF7118 0.73 +0.6
36,924 + GFF7118 0.73 -0.4
36,925 - GFF7118 0.73 -0.2
36,925 - GFF7118 0.73 +0.5
36,925 - GFF7118 0.73 +0.3
36,925 - GFF7118 0.73 -1.0
36,925 - GFF7118 0.73 -0.6
36,925 - GFF7118 0.73 -0.5
36,925 - GFF7118 0.73 +2.0
36,925 - GFF7118 0.73 -0.6
36,925 - GFF7118 0.73 -0.0
36,972 + GFF7118 0.78 +0.2
36,972 + GFF7118 0.78 -0.2
36,972 + GFF7118 0.78 -0.9
36,972 + GFF7118 0.78 +0.5
36,973 - GFF7118 0.78 -0.7
36,973 - GFF7118 0.78 -0.1
37,032 + GFF7118 0.85 -0.5
37,185 + +0.2
37,185 + +0.6

Or see this region's nucleotide sequence