Strain Fitness in Variovorax sp. SCN45 around GFF7077

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
110	+		GFF7076	0.80	-0.0
110	+		GFF7076	0.80	-0.1
111	-		GFF7076	0.81	-0.5
354	+		GFF7077	0.55	+0.1
354	+		GFF7077	0.55	+2.2
534	+				+1.7
534	+				+0.0
534	+				-0.5
534	+				-2.1
534	+				-0.3
534	+				-0.4
535	-				-0.1
535	-				+2.5
535	-				-0.6
535	-				-0.2
535	-				-0.1
535	-				-0.3
535	-				+0.5
551	+				-0.7
551	+				-0.3
551	+				-0.4
551	+				+0.8
552	-				-0.6
673	+				-0.8
673	+				-0.2
673	+				-0.1
673	+				+0.6
674	-				-0.2
773	-		GFF7078	0.59	-0.1
773	-		GFF7078	0.59	-0.3
851	+				+0.2
851	+				-0.4
851	+				+0.2
851	+				-0.2
852	-				-0.7
852	-				+0.5
871	-				+0.6
871	-				+0.4
997	-		GFF7079	0.44	+0.2
1,158	+				-0.5
1,159	-				-1.2
1,159	-				+0.7
1,180	-				-0.7
1,219	+				+1.4
1,219	+				-0.3
1,219	+				+0.2
1,220	-				+1.1
1,220	-				-1.7
1,319	+		GFF7080	0.29	-0.0
1,355	+		GFF7080	0.43	-1.1
1,355	+		GFF7080	0.43	-1.5
1,355	+		GFF7080	0.43	-0.2
1,356	-		GFF7080	0.43	-0.6
1,356	-		GFF7080	0.43	-0.2
1,356	-		GFF7080	0.43	-1.5
1,356	-		GFF7080	0.43	-0.3
1,402	+		GFF7080	0.62	-0.6
1,402	+		GFF7080	0.62	+0.8
1,402	+		GFF7080	0.62	-0.0
1,526	+				+0.3
1,526	+				-0.2
1,527	-				+0.1
1,527	-				-0.8
1,527	-				-0.2
1,527	-				-0.8
1,527	-				-0.9
1,527	-				-0.2
1,527	-				-0.0