Strain Fitness in Variovorax sp. SCN45 around GFF6913

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6912 and GFF6913 are separated by 131 nucleotidesGFF6913 and GFF6914 are separated by 100 nucleotides GFF6912 - L-sorbosone dehydrogenase, at 47,595 to 48,968 GFF6912 GFF6913 - Ser-tRNA(Ala) deacylase @ Gly-tRNA(Ala) deacylase, at 49,100 to 49,873 GFF6913 GFF6914 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 49,974 to 52,148 GFF6914 Position (kb) 49 50Strain fitness (log2 ratio) -2 -1 0 1 2at 48.188 kb on + strand, within GFF6912at 48.188 kb on + strand, within GFF6912at 48.188 kb on + strand, within GFF6912at 48.189 kb on - strand, within GFF6912at 48.189 kb on - strand, within GFF6912at 48.256 kb on + strand, within GFF6912at 48.256 kb on + strand, within GFF6912at 48.256 kb on + strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.373 kb on + strand, within GFF6912at 48.373 kb on + strand, within GFF6912at 48.373 kb on + strand, within GFF6912at 48.373 kb on + strand, within GFF6912at 48.374 kb on - strand, within GFF6912at 48.374 kb on - strand, within GFF6912at 48.374 kb on - strand, within GFF6912at 48.374 kb on - strand, within GFF6912at 48.374 kb on - strand, within GFF6912at 48.439 kb on + strand, within GFF6912at 48.682 kb on + strand, within GFF6912at 48.682 kb on + strand, within GFF6912at 48.682 kb on + strand, within GFF6912at 48.682 kb on + strand, within GFF6912at 48.682 kb on + strand, within GFF6912at 48.682 kb on + strand, within GFF6912at 48.683 kb on - strand, within GFF6912at 48.683 kb on - strand, within GFF6912at 48.683 kb on - strand, within GFF6912at 48.683 kb on - strand, within GFF6912at 48.683 kb on - strand, within GFF6912at 48.683 kb on - strand, within GFF6912at 48.683 kb on - strand, within GFF6912at 48.927 kb on + strandat 48.927 kb on + strandat 48.927 kb on + strandat 48.948 kb on + strandat 48.948 kb on + strandat 48.948 kb on + strandat 48.948 kb on + strandat 48.948 kb on + strandat 48.949 kb on - strandat 48.949 kb on - strandat 48.949 kb on - strandat 49.053 kb on + strandat 49.054 kb on - strandat 49.054 kb on - strandat 49.054 kb on - strandat 49.054 kb on - strandat 49.054 kb on - strandat 49.088 kb on + strandat 49.089 kb on - strandat 49.130 kb on + strandat 49.130 kb on + strandat 49.130 kb on + strandat 49.130 kb on + strandat 49.130 kb on + strandat 49.130 kb on + strandat 49.130 kb on + strandat 49.131 kb on - strandat 49.131 kb on - strandat 49.131 kb on - strandat 49.202 kb on + strand, within GFF6913at 49.202 kb on + strand, within GFF6913at 49.203 kb on - strand, within GFF6913at 49.203 kb on - strand, within GFF6913at 49.203 kb on - strand, within GFF6913at 49.502 kb on + strand, within GFF6913at 49.502 kb on + strand, within GFF6913at 49.503 kb on - strand, within GFF6913at 49.503 kb on - strand, within GFF6913at 49.503 kb on - strand, within GFF6913

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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48,188 + GFF6912 0.43 -0.2
48,188 + GFF6912 0.43 +0.0
48,188 + GFF6912 0.43 +2.0
48,189 - GFF6912 0.43 -0.9
48,189 - GFF6912 0.43 -0.1
48,256 + GFF6912 0.48 -1.1
48,256 + GFF6912 0.48 +1.6
48,256 + GFF6912 0.48 -0.7
48,257 - GFF6912 0.48 +0.1
48,257 - GFF6912 0.48 +1.7
48,257 - GFF6912 0.48 -0.4
48,257 - GFF6912 0.48 -1.2
48,257 - GFF6912 0.48 +0.0
48,257 - GFF6912 0.48 -1.1
48,257 - GFF6912 0.48 +0.7
48,373 + GFF6912 0.57 -1.2
48,373 + GFF6912 0.57 +0.4
48,373 + GFF6912 0.57 +0.0
48,373 + GFF6912 0.57 -0.3
48,374 - GFF6912 0.57 -2.1
48,374 - GFF6912 0.57 -0.1
48,374 - GFF6912 0.57 +1.7
48,374 - GFF6912 0.57 +0.2
48,374 - GFF6912 0.57 -0.5
48,439 + GFF6912 0.61 -0.4
48,682 + GFF6912 0.79 -0.2
48,682 + GFF6912 0.79 +0.1
48,682 + GFF6912 0.79 -0.6
48,682 + GFF6912 0.79 +0.7
48,682 + GFF6912 0.79 -0.0
48,682 + GFF6912 0.79 -0.2
48,683 - GFF6912 0.79 -1.1
48,683 - GFF6912 0.79 -2.5
48,683 - GFF6912 0.79 -2.3
48,683 - GFF6912 0.79 +0.2
48,683 - GFF6912 0.79 -0.4
48,683 - GFF6912 0.79 -0.5
48,683 - GFF6912 0.79 +0.7
48,927 + -1.2
48,927 + +0.0
48,927 + -0.9
48,948 + +0.3
48,948 + -1.0
48,948 + -0.7
48,948 + -0.4
48,948 + -1.0
48,949 - -0.4
48,949 - +1.0
48,949 - -0.7
49,053 + +0.6
49,054 - -0.2
49,054 - -0.3
49,054 - -0.2
49,054 - -0.2
49,054 - +0.2
49,088 + -1.5
49,089 - +0.1
49,130 + -1.2
49,130 + +1.0
49,130 + +0.2
49,130 + +0.0
49,130 + -0.7
49,130 + -0.0
49,130 + +0.7
49,131 - +0.7
49,131 - -0.3
49,131 - -0.9
49,202 + GFF6913 0.13 +0.7
49,202 + GFF6913 0.13 +0.5
49,203 - GFF6913 0.13 +0.6
49,203 - GFF6913 0.13 -0.3
49,203 - GFF6913 0.13 -0.5
49,502 + GFF6913 0.52 +0.3
49,502 + GFF6913 0.52 -0.5
49,503 - GFF6913 0.52 +0.0
49,503 - GFF6913 0.52 +0.2
49,503 - GFF6913 0.52 -0.3

Or see this region's nucleotide sequence