Strain Fitness in Variovorax sp. SCN45 around GFF6817

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6817 and GFF6818 are separated by 732 nucleotides GFF6817 - hypothetical protein, at 3 to 1,352 GFF6817 GFF6818 - hypothetical protein, at 2,085 to 5,882 GFF6818 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2 3at 0.073 kb on + strandat 0.073 kb on + strandat 0.094 kb on + strandat 0.094 kb on + strandat 0.095 kb on - strandat 0.095 kb on - strandat 0.095 kb on - strandat 0.134 kb on + strandat 0.135 kb on - strandat 0.184 kb on - strand, within GFF6817at 0.184 kb on - strand, within GFF6817at 0.246 kb on + strand, within GFF6817at 0.246 kb on + strand, within GFF6817at 0.246 kb on + strand, within GFF6817at 0.247 kb on - strand, within GFF6817at 0.317 kb on + strand, within GFF6817at 0.317 kb on - strand, within GFF6817at 0.320 kb on + strand, within GFF6817at 0.320 kb on + strand, within GFF6817at 0.320 kb on + strand, within GFF6817at 0.320 kb on + strand, within GFF6817at 0.321 kb on - strand, within GFF6817at 0.321 kb on - strand, within GFF6817at 0.321 kb on - strand, within GFF6817at 0.527 kb on + strand, within GFF6817at 0.528 kb on - strand, within GFF6817at 0.528 kb on - strand, within GFF6817at 0.528 kb on - strand, within GFF6817at 0.559 kb on + strand, within GFF6817at 0.559 kb on + strand, within GFF6817at 0.595 kb on + strand, within GFF6817at 0.596 kb on - strand, within GFF6817at 0.596 kb on - strand, within GFF6817at 0.596 kb on - strand, within GFF6817at 0.604 kb on + strand, within GFF6817at 0.647 kb on + strand, within GFF6817at 0.647 kb on + strand, within GFF6817at 0.648 kb on - strand, within GFF6817at 0.741 kb on - strand, within GFF6817at 0.741 kb on - strand, within GFF6817at 0.744 kb on + strand, within GFF6817at 0.744 kb on + strand, within GFF6817at 0.744 kb on + strand, within GFF6817at 0.744 kb on + strand, within GFF6817at 0.744 kb on + strand, within GFF6817at 0.744 kb on + strand, within GFF6817at 0.745 kb on - strand, within GFF6817at 0.745 kb on - strand, within GFF6817at 0.745 kb on - strand, within GFF6817at 0.745 kb on - strand, within GFF6817at 0.804 kb on - strand, within GFF6817at 0.816 kb on + strand, within GFF6817at 0.816 kb on + strand, within GFF6817at 0.816 kb on + strand, within GFF6817at 0.816 kb on + strand, within GFF6817at 0.817 kb on - strand, within GFF6817at 0.817 kb on - strand, within GFF6817at 0.817 kb on - strand, within GFF6817at 0.817 kb on - strand, within GFF6817at 0.914 kb on - strand, within GFF6817at 0.920 kb on + strand, within GFF6817at 0.920 kb on + strand, within GFF6817at 0.920 kb on + strand, within GFF6817at 0.920 kb on + strand, within GFF6817at 0.921 kb on - strand, within GFF6817at 0.921 kb on - strand, within GFF6817at 0.921 kb on - strand, within GFF6817at 0.921 kb on - strand, within GFF6817at 0.921 kb on - strand, within GFF6817at 0.930 kb on + strand, within GFF6817at 0.931 kb on - strand, within GFF6817at 0.996 kb on - strand, within GFF6817at 0.996 kb on - strand, within GFF6817at 1.025 kb on + strand, within GFF6817at 1.026 kb on - strand, within GFF6817at 1.026 kb on - strand, within GFF6817at 1.032 kb on - strand, within GFF6817at 1.035 kb on + strand, within GFF6817at 1.035 kb on + strand, within GFF6817at 1.036 kb on - strand, within GFF6817at 1.036 kb on - strand, within GFF6817at 1.043 kb on + strand, within GFF6817at 1.044 kb on - strand, within GFF6817at 1.044 kb on - strand, within GFF6817at 1.044 kb on - strand, within GFF6817at 1.044 kb on - strand, within GFF6817at 1.044 kb on - strand, within GFF6817at 1.044 kb on - strand, within GFF6817at 1.047 kb on + strand, within GFF6817at 1.048 kb on - strand, within GFF6817at 1.048 kb on - strand, within GFF6817at 1.048 kb on - strand, within GFF6817at 1.100 kb on + strand, within GFF6817at 1.100 kb on + strand, within GFF6817at 1.101 kb on - strand, within GFF6817at 1.101 kb on - strand, within GFF6817at 1.150 kb on - strand, within GFF6817at 1.150 kb on - strand, within GFF6817at 1.193 kb on + strand, within GFF6817at 1.193 kb on + strand, within GFF6817at 1.194 kb on - strand, within GFF6817at 1.194 kb on - strand, within GFF6817at 1.197 kb on + strand, within GFF6817at 1.198 kb on - strand, within GFF6817at 1.198 kb on - strand, within GFF6817at 1.198 kb on - strand, within GFF6817at 1.274 kb on - strandat 1.365 kb on + strandat 1.365 kb on + strandat 1.366 kb on - strandat 1.440 kb on + strandat 1.441 kb on - strandat 1.448 kb on + strandat 1.448 kb on + strandat 1.448 kb on + strandat 1.492 kb on + strandat 1.493 kb on - strandat 1.493 kb on - strandat 1.493 kb on - strandat 1.493 kb on - strandat 1.493 kb on - strandat 1.567 kb on + strandat 1.567 kb on + strandat 1.677 kb on + strandat 1.790 kb on - strandat 1.826 kb on + strandat 1.826 kb on + strandat 1.826 kb on + strandat 1.826 kb on + strandat 1.826 kb on + strandat 1.826 kb on + strandat 1.827 kb on - strandat 1.827 kb on - strandat 1.828 kb on + strandat 1.829 kb on - strandat 1.982 kb on + strandat 1.983 kb on - strandat 1.983 kb on - strandat 1.983 kb on - strandat 1.993 kb on + strandat 2.228 kb on - strandat 2.245 kb on - strandat 2.245 kb on - strandat 2.245 kb on - strandat 2.345 kb on + strandat 2.345 kb on + strandat 2.345 kb on + strandat 2.346 kb on - strandat 2.346 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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73 + +0.1
73 + -1.8
94 + -0.6
94 + +0.8
95 - +0.1
95 - -1.0
95 - -0.6
134 + -2.2
135 - -2.1
184 - GFF6817 0.13 +0.3
184 - GFF6817 0.13 -0.6
246 + GFF6817 0.18 -1.0
246 + GFF6817 0.18 +0.8
246 + GFF6817 0.18 -0.7
247 - GFF6817 0.18 -0.6
317 + GFF6817 0.23 +0.2
317 - GFF6817 0.23 -0.7
320 + GFF6817 0.23 -0.2
320 + GFF6817 0.23 -0.6
320 + GFF6817 0.23 +0.1
320 + GFF6817 0.23 +0.9
321 - GFF6817 0.24 -0.7
321 - GFF6817 0.24 -0.2
321 - GFF6817 0.24 -0.2
527 + GFF6817 0.39 +0.8
528 - GFF6817 0.39 +0.5
528 - GFF6817 0.39 +0.5
528 - GFF6817 0.39 +0.3
559 + GFF6817 0.41 +0.2
559 + GFF6817 0.41 -1.7
595 + GFF6817 0.44 -0.7
596 - GFF6817 0.44 +0.8
596 - GFF6817 0.44 +0.6
596 - GFF6817 0.44 +0.5
604 + GFF6817 0.45 -0.3
647 + GFF6817 0.48 +0.2
647 + GFF6817 0.48 -0.0
648 - GFF6817 0.48 -0.9
741 - GFF6817 0.55 -0.9
741 - GFF6817 0.55 -0.3
744 + GFF6817 0.55 -0.1
744 + GFF6817 0.55 -1.2
744 + GFF6817 0.55 +0.2
744 + GFF6817 0.55 +0.4
744 + GFF6817 0.55 +0.1
744 + GFF6817 0.55 +0.0
745 - GFF6817 0.55 +0.3
745 - GFF6817 0.55 -0.3
745 - GFF6817 0.55 -0.7
745 - GFF6817 0.55 +0.7
804 - GFF6817 0.59 -0.3
816 + GFF6817 0.60 -0.3
816 + GFF6817 0.60 +0.1
816 + GFF6817 0.60 +1.5
816 + GFF6817 0.60 +0.0
817 - GFF6817 0.60 -0.3
817 - GFF6817 0.60 -0.8
817 - GFF6817 0.60 +3.6
817 - GFF6817 0.60 +0.6
914 - GFF6817 0.67 +0.2
920 + GFF6817 0.68 -0.3
920 + GFF6817 0.68 -0.7
920 + GFF6817 0.68 +0.3
920 + GFF6817 0.68 -0.4
921 - GFF6817 0.68 -0.2
921 - GFF6817 0.68 -0.6
921 - GFF6817 0.68 +0.1
921 - GFF6817 0.68 +0.3
921 - GFF6817 0.68 -0.6
930 + GFF6817 0.69 -0.4
931 - GFF6817 0.69 +0.2
996 - GFF6817 0.74 -1.1
996 - GFF6817 0.74 -0.3
1,025 + GFF6817 0.76 +0.5
1,026 - GFF6817 0.76 -0.5
1,026 - GFF6817 0.76 +0.0
1,032 - GFF6817 0.76 -1.0
1,035 + GFF6817 0.76 -1.6
1,035 + GFF6817 0.76 -0.6
1,036 - GFF6817 0.77 -0.3
1,036 - GFF6817 0.77 +0.3
1,043 + GFF6817 0.77 -2.3
1,044 - GFF6817 0.77 -0.6
1,044 - GFF6817 0.77 +0.2
1,044 - GFF6817 0.77 +0.6
1,044 - GFF6817 0.77 -0.3
1,044 - GFF6817 0.77 +0.3
1,044 - GFF6817 0.77 +1.3
1,047 + GFF6817 0.77 -0.1
1,048 - GFF6817 0.77 +0.2
1,048 - GFF6817 0.77 -0.6
1,048 - GFF6817 0.77 +1.3
1,100 + GFF6817 0.81 +0.8
1,100 + GFF6817 0.81 -0.0
1,101 - GFF6817 0.81 -0.6
1,101 - GFF6817 0.81 +0.0
1,150 - GFF6817 0.85 -0.5
1,150 - GFF6817 0.85 -0.2
1,193 + GFF6817 0.88 +1.5
1,193 + GFF6817 0.88 -1.0
1,194 - GFF6817 0.88 -0.3
1,194 - GFF6817 0.88 -0.0
1,197 + GFF6817 0.88 +0.5
1,198 - GFF6817 0.89 +0.0
1,198 - GFF6817 0.89 +0.4
1,198 - GFF6817 0.89 -0.3
1,274 - +0.2
1,365 + +1.0
1,365 + -0.2
1,366 - +0.3
1,440 + +0.3
1,441 - +3.1
1,448 + -0.7
1,448 + -1.1
1,448 + -1.3
1,492 + -0.6
1,493 - +0.1
1,493 - -0.6
1,493 - +0.0
1,493 - -0.1
1,493 - -1.6
1,567 + -0.7
1,567 + -1.2
1,677 + -2.1
1,790 - +1.1
1,826 + -2.3
1,826 + -1.2
1,826 + -2.3
1,826 + +1.3
1,826 + -0.4
1,826 + -0.3
1,827 - -0.7
1,827 - -1.3
1,828 + +0.4
1,829 - -0.1
1,982 + -0.3
1,983 - -1.2
1,983 - -1.7
1,983 - -0.0
1,993 + -0.7
2,228 - +1.9
2,245 - -1.5
2,245 - -0.2
2,245 - -0.8
2,345 + -0.1
2,345 + -0.8
2,345 + +0.8
2,346 - -0.3
2,346 - -0.5

Or see this region's nucleotide sequence